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Volumn 72, Issue 6, 2009, Pages 974-981

Mixed-model of ANOVA for measurement reproducibility in proteomics

Author keywords

ANOVA; Experimental reproducibility; Mixed models; PCA; Proteomics; Variability

Indexed keywords

ANALYSIS OF VARIANCE; ARTICLE; CLINICAL ARTICLE; HODGKIN DISEASE; HUMAN; INTERMETHOD COMPARISON; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROTEOMICS; REPRODUCIBILITY;

EID: 67749103498     PISSN: 18743919     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jprot.2009.05.005     Document Type: Article
Times cited : (14)

References (18)
  • 1
    • 45549105194 scopus 로고    scopus 로고
    • Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies: a systematic review
    • Callesen A.K., Vach W., Jørgensen P.E., Cold S., Mogensen O., Kruse T.A., et al. Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies: a systematic review. J Proteome Res 7 (2008) 1395-1402
    • (2008) J Proteome Res , vol.7 , pp. 1395-1402
    • Callesen, A.K.1    Vach, W.2    Jørgensen, P.E.3    Cold, S.4    Mogensen, O.5    Kruse, T.A.6
  • 2
    • 66749171697 scopus 로고    scopus 로고
    • Statistical design of quantitative mass spectrometry-based proteomic experiments
    • Oberg A., and Vitek O. Statistical design of quantitative mass spectrometry-based proteomic experiments. J Proteome Res 8 (2009) 2144-2156
    • (2009) J Proteome Res , vol.8 , pp. 2144-2156
    • Oberg, A.1    Vitek, O.2
  • 3
    • 59449088180 scopus 로고    scopus 로고
    • Sample size determination in clinical proteomic profiling experiments using mass spectrometry for class comparison
    • Cairns D.A., Barrett J.H., Billingham L.J., Stanley A.J., Xinarianos G., Field J.K., et al. Sample size determination in clinical proteomic profiling experiments using mass spectrometry for class comparison. Proteomics 9 (2009) 74-86
    • (2009) Proteomics , vol.9 , pp. 74-86
    • Cairns, D.A.1    Barrett, J.H.2    Billingham, L.J.3    Stanley, A.J.4    Xinarianos, G.5    Field, J.K.6
  • 4
    • 0141615786 scopus 로고    scopus 로고
    • Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization
    • Coombes K.R., Fritsche Jr. H.A., Clarke C., Chen J.N., Baggerly K.A., Morris J.S., et al. Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization. Clin Chem 49 (2003) 1615-1623
    • (2003) Clin Chem , vol.49 , pp. 1615-1623
    • Coombes, K.R.1    Fritsche Jr., H.A.2    Clarke, C.3    Chen, J.N.4    Baggerly, K.A.5    Morris, J.S.6
  • 5
    • 27644574673 scopus 로고    scopus 로고
    • Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS)
    • Hong H., Dragan Y., Epstein J., Teitel C., Chen B., Xie Q., et al. Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinformatics 6 Suppl. 2 (2005) S5
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 2
    • Hong, H.1    Dragan, Y.2    Epstein, J.3    Teitel, C.4    Chen, B.5    Xie, Q.6
  • 6
    • 19944419092 scopus 로고    scopus 로고
    • Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility
    • Semmes O.J., Feng Z., Adam B.L., Banez L.L., Bigbee W.L., Campos D., et al. Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility. Clin Chem 51 (2005) 102-112
    • (2005) Clin Chem , vol.51 , pp. 102-112
    • Semmes, O.J.1    Feng, Z.2    Adam, B.L.3    Banez, L.L.4    Bigbee, W.L.5    Campos, D.6
  • 7
    • 33947684306 scopus 로고    scopus 로고
    • Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data
    • Truntzer C., Mercier C., Estève J., Gautier C., and Roy P. Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data. BMC Bioinformatics 8 (2007) 90
    • (2007) BMC Bioinformatics , vol.8 , pp. 90
    • Truntzer, C.1    Mercier, C.2    Estève, J.3    Gautier, C.4    Roy, P.5
  • 8
    • 3042541639 scopus 로고    scopus 로고
    • Bioinfomatics strategies for proteomic profiling
    • White C.N., Chan D.W., and Zhang Z. Bioinfomatics strategies for proteomic profiling. Clin Biochem 37 (2004) 613-641
    • (2004) Clin Biochem , vol.37 , pp. 613-641
    • White, C.N.1    Chan, D.W.2    Zhang, Z.3
  • 9
    • 38049025722 scopus 로고    scopus 로고
    • Multivariate analysis of complex gene expression and clinical phenotypes with genetic marker data
    • On Behalf of Group 12
    • Beyene J., Tritchler D., and On Behalf of Group 12. Multivariate analysis of complex gene expression and clinical phenotypes with genetic marker data. Genet Epidemiol 31 (2007) S103-S109
    • (2007) Genet Epidemiol , vol.31
    • Beyene, J.1    Tritchler, D.2
  • 11
    • 18744384734 scopus 로고    scopus 로고
    • Feature extraction and quantification of mass spectrometry data in biomedical applications using the mean spectrum
    • Morris J.S., Coombes K.R., Koomen J.M., Baggerly K.A., and Kobayashi R. Feature extraction and quantification of mass spectrometry data in biomedical applications using the mean spectrum. Bioinformatics 21 (2005) 1764-1775
    • (2005) Bioinformatics , vol.21 , pp. 1764-1775
    • Morris, J.S.1    Coombes, K.R.2    Koomen, J.M.3    Baggerly, K.A.4    Kobayashi, R.5
  • 12
    • 0001710505 scopus 로고
    • Analysis of a complex of statistical variables into principal components
    • &
    • Hotelling H. Analysis of a complex of statistical variables into principal components. J Educ Psychol 1933;24:417-41 & 498-520.
    • (1933) J Educ Psychol , vol.24
    • Hotelling, H.1
  • 18
    • 77956889208 scopus 로고
    • Recovery of inter-block information when block sizes are unequal
    • Patterson H.D., and Thompson R. Recovery of inter-block information when block sizes are unequal. Biometrika 58 (1971) 545-554
    • (1971) Biometrika , vol.58 , pp. 545-554
    • Patterson, H.D.1    Thompson, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.