-
1
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends, T. R. M., E. Hartmann, J. J. Griese, T. Beitlich, N. V. Kirienko, D. A. Ryjenkov, J. Reinstein, R. I. Shoeman, M. Gomelsky, and I. Schlichting. 2009. Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature, 459:1015-1018.
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.M.1
Hartmann, E.2
Griese, J.J.3
Beitlich, T.4
Kirienko, N.V.5
Ryjenkov, D.A.6
Reinstein, J.7
Shoeman, R.I.8
Gomelsky, M.9
Schlichting, I.10
-
2
-
-
33748686575
-
Cyclic nucleotide phosphodiesterases: Molecular regulation to clinical use
-
Bender, A. T., and J. A. Beavo. 2006. Cyclic nucleotide phosphodiesterases: molecular regulation to clinical use. Pharmacol. Rev. 58:488-520.
-
(2006)
Pharmacol. Rev
, vol.58
, pp. 488-520
-
-
Bender, A.T.1
Beavo, J.A.2
-
3
-
-
0035957226
-
Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor
-
Chang, A. L., J. R. Tuckerman, G. Gonzalez, R. Mayer, H. Weinhouse, G. Volman, D. Amikam, M. Benziman, and M. A. Gilles-Gonzalez. 2001. Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor. Biochemistry 40:3420-3426.
-
(2001)
Biochemistry
, vol.40
, pp. 3420-3426
-
-
Chang, A.L.1
Tuckerman, J.R.2
Gonzalez, G.3
Mayer, R.4
Weinhouse, H.5
Volman, G.6
Amikam, D.7
Benziman, M.8
Gilles-Gonzalez, M.A.9
-
4
-
-
24744457756
-
Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP
-
Christen, M., B. Christen, M. Folcher, A. Schauerte, and U. Jenal. 2005. Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP. J. Biol. Chem. 280:30829-30837.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 30829-30837
-
-
Christen, M.1
Christen, B.2
Folcher, M.3
Schauerte, A.4
Jenal, U.5
-
5
-
-
33846847846
-
c-di-GMP-mediated regulation of virulence and biofilm formation
-
Cotter, P. A., and S. Stibitz. 2007. c-di-GMP-mediated regulation of virulence and biofilm formation. Curr. Opin. Microbiol. 10:17-23.
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 17-23
-
-
Cotter, P.A.1
Stibitz, S.2
-
6
-
-
0029070171
-
Omega loops: Nonregular secondary structures significant in protein function and stability
-
Fetrow, J. S. 1995. Omega loops: nonregular secondary structures significant in protein function and stability. FASEB J. 9:708-717.
-
(1995)
FASEB J
, vol.9
, pp. 708-717
-
-
Fetrow, J.S.1
-
7
-
-
35648979519
-
Virulence and prodigiosin antibiotic biosynthesis in Serratia are regulated pleiotropically by the GGDEF/EAL domain protein, PigX
-
Fineran, P. C., N. R. Williamson, K. S. Lilley, and G. P. Salmond. 2007. Virulence and prodigiosin antibiotic biosynthesis in Serratia are regulated pleiotropically by the GGDEF/EAL domain protein, PigX. J. Bacteriol. 189:7653-7662.
-
(2007)
J. Bacteriol
, vol.189
, pp. 7653-7662
-
-
Fineran, P.C.1
Williamson, N.R.2
Lilley, K.S.3
Salmond, G.P.4
-
8
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser, A., R. K. Do, and A. Sali. 2000. Modeling of loops in protein structures. Protein Sci. 9:1753-1773.
-
(2000)
Protein Sci
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
9
-
-
4744349524
-
Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation
-
Garcia, B., C. Latasa, C. Solano, F. G. Portillo, C. Gamazo, and I. Lasa. 2004. Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation. Mol. Microbiol. 54:264-277.
-
(2004)
Mol. Microbiol
, vol.54
, pp. 264-277
-
-
Garcia, B.1
Latasa, C.2
Solano, C.3
Portillo, F.G.4
Gamazo, C.5
Lasa, I.6
-
10
-
-
14544291492
-
A three-component regulatory system regulates biofilm maturation and type III secretion in Pseudomonas aeruginosa
-
Kuchma, S. L., J. P. Connolly, and G. A. O'Toole. 2005. A three-component regulatory system regulates biofilm maturation and type III secretion in Pseudomonas aeruginosa. J. Bacteriol. 187:1441-1454.
-
(2005)
J. Bacteriol
, vol.187
, pp. 1441-1454
-
-
Kuchma, S.L.1
Connolly, J.P.2
O'Toole, G.A.3
-
11
-
-
13144257722
-
A novel two-component system controls the expression of Pseudomonas aeruginosa fimbrial cup genes
-
Kulasekara, H. D., I. Ventre, B. R. Kulasekara, A. Lazdunski, A. Filloux, and S. Lory. 2005. A novel two-component system controls the expression of Pseudomonas aeruginosa fimbrial cup genes. Mol. Microbiol. 55:368-380.
-
(2005)
Mol. Microbiol
, vol.55
, pp. 368-380
-
-
Kulasekara, H.D.1
Ventre, I.2
Kulasekara, B.R.3
Lazdunski, A.4
Filloux, A.5
Lory, S.6
-
12
-
-
67649746308
-
Crystal structures of YkuI and its complex with second messenger cyclic di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains
-
Minasov, G., S. Padavattan, L. Shuvalova, J. S. Brunzelle, D. J. Miller, A. Basle, C. Massa, F. R. Collart, T. Schirmer, and W. F. Anderson. 2009. Crystal structures of YkuI and its complex with second messenger cyclic di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains. J. Biol. Chem. 284:13174-13184.
-
(2009)
J. Biol. Chem
, vol.284
, pp. 13174-13184
-
-
Minasov, G.1
Padavattan, S.2
Shuvalova, L.3
Brunzelle, J.S.4
Miller, D.J.5
Basle, A.6
Massa, C.7
Collart, F.R.8
Schirmer, T.9
Anderson, W.F.10
-
13
-
-
62549150834
-
LapD is a bis-(3′,5′)-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1
-
Newell, P. D., R. D. Monds, and G. A. O'Toole. 2009. LapD is a bis-(3′,5′)-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1. Proc. Natl. Acad. Sci. USA 106:3461-3466.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 3461-3466
-
-
Newell, P.D.1
Monds, R.D.2
O'Toole, G.A.3
-
14
-
-
1842451699
-
Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel diguanylate cyclase output domain
-
Paul, R., S. Weiser, N. C. Amiot, C. Chan, T. Schirmer, B. Giese, and U. Jenal. 2004. Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel diguanylate cyclase output domain. Genes Dev. 18:715-727.
-
(2004)
Genes Dev
, vol.18
, pp. 715-727
-
-
Paul, R.1
Weiser, S.2
Amiot, N.C.3
Chan, C.4
Schirmer, T.5
Giese, B.6
Jenal, U.7
-
15
-
-
51149098349
-
Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli
-
Pesavento, C., G. Becker, N. Sommerfeldt, A. Possling, N. Tschowri, A. Mehlis, and R. Hengge. 2008. Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli. Genes Dev. 22:2434-2446.
-
(2008)
Genes Dev
, vol.22
, pp. 2434-2446
-
-
Pesavento, C.1
Becker, G.2
Sommerfeldt, N.3
Possling, A.4
Tschowri, N.5
Mehlis, A.6
Hengge, R.7
-
16
-
-
67749113278
-
The functional role of a conserved loop in EAL domain-based cyclic di-GMP-specific phosphodiesterase
-
Rao, F., Y. Qi, H. S. Chong, M. Kotaka, B. Li, J. Li, J. Lescar, K. Tang, and Z.-X. Liang. 2009. The functional role of a conserved loop in EAL domain-based cyclic di-GMP-specific phosphodiesterase. J. Bacteriol. 191:4722-4731.
-
(2009)
J. Bacteriol
, vol.191
, pp. 4722-4731
-
-
Rao, F.1
Qi, Y.2
Chong, H.S.3
Kotaka, M.4
Li, B.5
Li, J.6
Lescar, J.7
Tang, K.8
Liang, Z.-X.9
-
17
-
-
47049115663
-
Catalytic mechanism of cyclic di-GMP-specific phosphodiesterase: A study of the EAL domain-containing RocR from Pseudomonas aeruginosa
-
Rao, F., Y. Yang, Y. Qi, and Z.-X. Liang. 2008. Catalytic mechanism of cyclic di-GMP-specific phosphodiesterase: a study of the EAL domain-containing RocR from Pseudomonas aeruginosa. J. Bacteriol. 190:3622-3631.
-
(2008)
J. Bacteriol
, vol.190
, pp. 3622-3631
-
-
Rao, F.1
Yang, Y.2
Qi, Y.3
Liang, Z.-X.4
-
18
-
-
55749083885
-
-
Römling, U. 2008. Great times for small molecules: c-di-AMP, a second messenger candidate in Bacteria and Archaea. Sci. Signaling 1:pe39.
-
Römling, U. 2008. Great times for small molecules: c-di-AMP, a second messenger candidate in Bacteria and Archaea. Sci. Signaling 1:pe39.
-
-
-
-
19
-
-
22644438480
-
c-di-GMP: The dawning of a novel bacterial signalling system
-
Römling, U., M. Gomelsky, and M. Y. Galperin. 2005. c-di-GMP: the dawning of a novel bacterial signalling system. Mol. Microbiol. 57:629-639.
-
(2005)
Mol. Microbiol
, vol.57
, pp. 629-639
-
-
Römling, U.1
Gomelsky, M.2
Galperin, M.Y.3
-
20
-
-
0025116425
-
The cyclic diguanylic acid regulatory system of cellulose synthesis in Acetobacter xylinum. Chemical synthesis and biological activity of cyclic nucleotide dimer, trimer, and phosphothioate derivatives
-
Ross, P., R. Mayer, H. Weinhouse, D. Amikam, Y. Huggirat, M. Benziman, E. de Vroom, A. Fidder, P. de Paus, L. A. Sliedregt, et al. 1990. The cyclic diguanylic acid regulatory system of cellulose synthesis in Acetobacter xylinum. Chemical synthesis and biological activity of cyclic nucleotide dimer, trimer, and phosphothioate derivatives. J. Biol. Chem. 265:18933-18943.
-
(1990)
J. Biol. Chem
, vol.265
, pp. 18933-18943
-
-
Ross, P.1
Mayer, R.2
Weinhouse, H.3
Amikam, D.4
Huggirat, Y.5
Benziman, M.6
de Vroom, E.7
Fidder, A.8
de Paus, P.9
Sliedregt, L.A.10
-
21
-
-
0023090935
-
Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid
-
Ross, P., H. Weinhouse, Y. Aloni, D. Michaeli, P. Weinberger-Ohana, R. Mayer, S. Braun, E. de Vroom, G. A. van der Marel, J. H. van Boom, and M. Benziman. 1987. Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325:279-281.
-
(1987)
Nature
, vol.325
, pp. 279-281
-
-
Ross, P.1
Weinhouse, H.2
Aloni, Y.3
Michaeli, D.4
Weinberger-Ohana, P.5
Mayer, R.6
Braun, S.7
de Vroom, E.8
van der Marel, G.A.9
van Boom, J.H.10
Benziman, M.11
-
22
-
-
33646249963
-
Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover
-
Ryan, R. P., Y. Fouhy, J. F. Lucey, L. C. Crossman, S. Spiro, Y. W. He, L. H. Zhang, S. Heeb, M. Camara, P. Williams, and J. M. Dow. 2006. Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc. Natl. Acad. Sci. USA 103:6712-6717.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6712-6717
-
-
Ryan, R.P.1
Fouhy, Y.2
Lucey, J.F.3
Crossman, L.C.4
Spiro, S.5
He, Y.W.6
Zhang, L.H.7
Heeb, S.8
Camara, M.9
Williams, P.10
Dow, J.M.11
-
23
-
-
21844451590
-
The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: Enzymatically active and inactive EAL domains
-
Schmidt, A. J., D. A. Ryjenkov, and M. Gomelsky. 2005. The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains. J. Bacteriol. 187:4774-4781.
-
(2005)
J. Bacteriol
, vol.187
, pp. 4774-4781
-
-
Schmidt, A.J.1
Ryjenkov, D.A.2
Gomelsky, M.3
-
24
-
-
34247566143
-
Role of EAL-containing proteins in multicellular behavior of Salmonella enterica serovar Typhimurium
-
Simm, R., A. Lusch, A. Kader, M. Andersson, and U. Römling. 2007. Role of EAL-containing proteins in multicellular behavior of Salmonella enterica serovar Typhimurium. J. Bacteriol. 189:3613-3623.
-
(2007)
J. Bacteriol
, vol.189
, pp. 3613-3623
-
-
Simm, R.1
Lusch, A.2
Kader, A.3
Andersson, M.4
Römling, U.5
-
25
-
-
4344688129
-
GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility
-
Simm, R., M. Morr, A. Kader, M. Nimtz, and U. Römling. 2004. GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Mol. Microbiol. 53:1123-1134.
-
(2004)
Mol. Microbiol
, vol.53
, pp. 1123-1134
-
-
Simm, R.1
Morr, M.2
Kader, A.3
Nimtz, M.4
Römling, U.5
-
26
-
-
67549109657
-
A role for the EAL-like protein STM1344 in regulation of CsgD expression and motility in Salmonella enterica serovar Typhimurium
-
Simm, R., U. Remminghorst, I. Ahmad, K. Zakikhany, and U. Römling. 2009. A role for the EAL-like protein STM1344 in regulation of CsgD expression and motility in Salmonella enterica serovar Typhimurium. J. Bacteriol. 191:3928-3937.
-
(2009)
J. Bacteriol
, vol.191
, pp. 3928-3937
-
-
Simm, R.1
Remminghorst, U.2
Ahmad, I.3
Zakikhany, K.4
Römling, U.5
-
27
-
-
33748705968
-
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E
-
Suzuki, K., P. Babitzke, S. R. Kushner, and T. Romeo. 2006. Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes Dev. 20:2605-2617.
-
(2006)
Genes Dev
, vol.20
, pp. 2605-2617
-
-
Suzuki, K.1
Babitzke, P.2
Kushner, S.R.3
Romeo, T.4
-
28
-
-
0031783181
-
Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: Genetic organization and occurrence of conserved domains in isoenzymes
-
Tal, R., H. C. Wong, R. Calhoon, D. Gelfand, A. L. Fear, G. Volman, R. Mayer, P. Ross, D. Amikam, H. Weinhouse, A. Cohen, S. Sapir, P. Ohana, and M. Benziman. 1998. Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes. J. Bacteriol. 180:4416-4425.
-
(1998)
J. Bacteriol
, vol.180
, pp. 4416-4425
-
-
Tal, R.1
Wong, H.C.2
Calhoon, R.3
Gelfand, D.4
Fear, A.L.5
Volman, G.6
Mayer, R.7
Ross, P.8
Amikam, D.9
Weinhouse, H.10
Cohen, A.11
Sapir, S.12
Ohana, P.13
Benziman, M.14
-
29
-
-
35848951876
-
Roles of cyclic diguanylate in the regulation of bacterial pathogenesis
-
Tamayo, R., J. T. Pratt, and A. Camilli. 2007. Roles of cyclic diguanylate in the regulation of bacterial pathogenesis. Annu. Rev. Microbiol. 61:131-148.
-
(2007)
Annu. Rev. Microbiol
, vol.61
, pp. 131-148
-
-
Tamayo, R.1
Pratt, J.T.2
Camilli, A.3
-
30
-
-
25144489145
-
The EAL domain protein VieA is a cyclic diguanylate phosphodiesterase
-
Tamayo, R., A. D. Tischler, and A. Camilli. 2005. The EAL domain protein VieA is a cyclic diguanylate phosphodiesterase. J. Biol. Chem. 280:33324-33330.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 33324-33330
-
-
Tamayo, R.1
Tischler, A.D.2
Camilli, A.3
-
31
-
-
3843069972
-
Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation
-
Tischler, A. D., and A. Camilli. 2004. Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol. Microbiol. 53:857-869.
-
(2004)
Mol. Microbiol
, vol.53
, pp. 857-869
-
-
Tischler, A.D.1
Camilli, A.2
-
32
-
-
61449219844
-
The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli
-
Tschowri, N., S. Busse, and R. Hengge. 2009. The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli. Genes Dev. 23:522-534.
-
(2009)
Genes Dev
, vol.23
, pp. 522-534
-
-
Tschowri, N.1
Busse, S.2
Hengge, R.3
-
33
-
-
33750432511
-
Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli
-
Weber, H., C. Pesavento, A. Possling, G. Tischendorf, and R. Hengge. 2006. Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli. Mol. Microbiol. 62:1014-1034.
-
(2006)
Mol. Microbiol
, vol.62
, pp. 1014-1034
-
-
Weber, H.1
Pesavento, C.2
Possling, A.3
Tischendorf, G.4
Hengge, R.5
-
34
-
-
43049087389
-
Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates
-
Witte, G., S. Hartung, K. Buttner, and K. P. Hopfner. 2008. Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates. Mol. Cell 30:167-178.
-
(2008)
Mol. Cell
, vol.30
, pp. 167-178
-
-
Witte, G.1
Hartung, S.2
Buttner, K.3
Hopfner, K.P.4
|