Molecular markers for biodiversity analysis of wildlife animals: A brief review;Uso de los marcadores moleculares para el análisis de biodiversidad de los animales salvajes: Una breve revisión

Animal Biodiversity and Conservation

Volumn 32, Issue 1, 2009, Pages 9-17

  Arif, I A ^a   Khan, H A ^a  

^a KING SAUD UNIVERSITY   (Saudi Arabia)

Author keywords

Biodiversity; Conservation; Molecular markers; Wildlife animals

Indexed keywords

BIODIVERSITY; BIOMARKER; DNA FINGERPRINTING; GENETIC STRUCTURE; GENETIC VARIATION; MITOCHONDRIAL DNA; NATURE CONSERVATION;

ANIMALIA;

EID: 67651207165     PISSN: 1578665X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (58)

1. Allendorf, F. W. & Luikart, G., 2007. Conservation and the genetics of populations. Blackwell Publishing, Malden, Massachusetts.
2. Alvarez, Y., Mateo, J. A., Andreu, A. C., Diaz-Paniagua, C., Diez, A. & Bautista, J. M., 2000. Mitochondrial DNA haplotyping of Testudo graeca on both continental sides of the Straits of Gibraltar. Journal of Heredity, 91: 39-41.
3. Avise, J. C., 2004. Molecular markers, natural history and evolution. Sinauer Associates, Sunderland, Massachusetts.
4. Banhos, A., Hrbek, T., Gravena, W., Sanaiotti, T. & Farias, I. P., 2008. Genomic resources for the conservation and management of the harpy eagle (Harpia harpyja, Falconiformes, Accipitridae). Genetics and Molecular Biology, 31: 146-154.
5. Chan, C. H., Zhao, Y., Cheung, M. Y. & Chambers, G. K., 2008. Isolation and characterization of microsatellites in the kakerori (Pomarea dimidiata) using feathers as source of DNA. Conservation Genetics, 9: 1067-1070.
6. Crnokrak, P. & Roff, D. A., 1999. Inbreeding depression in the wild. Heredity, 83: 260-270.
7. Dasmahapatra, K. K., Lacy, R. C. & Amos, W., 2008. Estimating levels of inbreeding using AFLP markers. Heredity, 100: 286-295.
8. Dawnay, N., Ogden, R., McEwing, R., Carvalho, G. R. & Thorpe, R. S., 2007. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Science International, 173(1): 1-6.
9. Fisher, B. L. & Smith, M. A., 2008. A revision of Malagasy species of Anochetus mayr and Odontomachus latreille (Hymenoptera: Formicidae). PLoS ONE, 3(5): e1787.
10. Fleischer, R. C., Kirchman, J. J., Dumbacher, J. P, Bevier, L., Dove, C., Rotzel, N. C., Edwards, S. V., Lammertink, M., Miglia, K. J. & Moore, W. S, 2006. Mid-Pleistocene divergence of Cuban and North American ivory-billed woodpeckers. Biology Letters, 2: 466-469.
11. Frankham, R., 2003. Genetics and conservation biology. Comptes rendus Biologies, 326: S22-S29.
12. Frankham, R., Ballou, J. D. & Briscoe, D. A., 2002. Introduction to Conservation Genetics. Cambridge Univ. Press, New York.
13. Freeland, J. R., 2005. Molecular Ecology. John Wiley and Sons, West Essex, UK.
14. Freitas, P. D., Calgaro, M. R. & Galetti Jr, P. M., 2007. Genetic diversity within and between broodstocks of the white shrimp Litopenaeus vannamei (Boone, 1931) (Decapoda, Penaeidae) and its implication for the gene pool conservation. Brazilian Journal of Biology, 67: 939-943.
15. Gerber, A. S., Loggins, R., Kumar, S. & Dowling, T. E., 2001. Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes? Annual Reviews of Genetics, 35: 539-566.
16. Geyer, C. J., Ryder, O. A., Chemnick, L. G. & Thompson, E. A., 1993. Analysis of relatedness in the California Condor, from DNA fingerprints. Molecular Biology and Evolution, 10: 571-589.
17. Giannasi, N., Thorpe, R. S. & Malhotra, A., 2001. The use of amplified fragment length polymorphism in determining species trees at fine taxonomic levels: analysis of a medically important snake, Trimeresurus albolabris. Molecular Ecology, 10: 419-426.
18. Gouin, N., Grandjean, F., Bouchon, D., Reynolds, J. D. & Souty-Grosset, C., 2001. Population genetic structure of the endangered freshwater crayfish Austropotamobius pallipes, assessed using RAPD markers. Heredity, 87: 80-87.
19. Guha, S., Goyal, S. P. & Kashyap, V. K., 2006. Genomic variation in the mitochondrially encoded cytochrome b (MT-CYB) and 16S rRNA (MT-RNR2) genes: characterization of eight endangered Pecoran species. Animal Genetics, 37: 262-265.
20. Haig, S. M., Ballou, J. D. & Casna, N. J., 1994. Identification of kin structure among Guam rail founders: a comparison of pedigrees and DNA profiles. Molecular Ecology, 3: 109-119.
21. Hu, J., Fang, S. G. & Wan, Q. H., 2006. Genetic diversity of Chinese water deer (Hydropotes inermis inermis): implications for conservation. Biochemical Genetics, 44: 161-172.
22. Idaghdour, Y., Broderick, D., Korrida, A. & Chbel, F., 2004. Mitochondrial control region diversity of the houbara bustard Chlamydotis undulata complex and genetic structure along the Atlantic seaboard of North Africa. Molecular Ecology, 13: 43-54.
23. Iyengar, A., Diniz, F. M., Gilbert, T., Woodfine, T., Knowles, J. & Maclean, N., 2006. Structure and evolution of the mitochondrial control region in oryx. Molecular Phylogenetics and Evolution, 40: 305-314.
24. Janzen, D. H., Hajibabaei, M., Burns, J. M., Hallwachs, W., Remigio, E. & Hebert, P. D., 2005. Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philosophical Transactions of the Royal Society London B: Biological Sciences, 360: 1835-1845.
25. Johnson, W. E. & O'Brien, S. J., 1997. Phylogenetic Reconstruction of the Felidae Using 16S rRNA and NADH-5 Mitochondrial Genes. Journal of Molecular Evolution, 44: S98-S116.
26. Katsares, V., Tsiora, A., Galinou-Mitsoudi, S. & Imsiridou, A., 2008 Genetic structure of the endangered species Pinna nobilis (Mollusca: Bivalvia) inferred from mtDNA sequences. Biologia, 63: 412-417.
27. Kawaka, M., Horbanczuk, J. O., Sacharczuk, M., Zieba, G., Lukaszewicz, M., Jaszczak, K. & Parada, R., 2007. Genetic characteristics of the ostrich population using molecular methods. Poultry Science, 86: 277-281.
28. Land, D. E. & Lacy, R. C., 2000. Introgression level achieved through Florida panther genetic restoration. Endangered Species Updates, 17: 99-103.
29. Lande, R., 1988. Genetics and demography in biological conservation. Science, 241: 1455-1460.
30. Lei, R., Jian, Z., Hu, Z. & Yang, W., 2003. Phylogenetic relationships of Chinese antelopes (Subfamily Antilopinae) based on mitochondrial Ribosomal RNA gene sequences. Journal of Zoology, 261: 227-237.
31. Li, Y., Wongprasert, K., Shekhar, M., Ryan, J., Dierens, L., Meadows, J., Preston, N. P., Coman, G. J. & Lyons, R. E., 2007. Development of two microsatellite multiplex systems for black tiger shrimp Penaeus monodon and its application in genetic diversity study for two populations. Aquaculture, 266: 279-288.
32. Lorenz, J. G., Jackson, W. E., Beck, J. C. & Hanner, R., 2005. The problems and promise of DNA barcodes for species diagnosis of primate biomaterials. Philosophical Transactions of the Royal Society London B: Biological Sciences, 360: 1869-1877.
33. Lougheed, S. C., Gibbs, H. L., Prior, K. A. & Weatherhead, P. J., 2000. A comparison of RAPD versus microsatellite DNA markers in population studies of the massasauga rattlesnake. Journal of Heredity, 91(6): 458-463.
34. Lucchini, V., 2003. AFLP: a useful tool for biodiversity conservation and management. Comptes rendus Biologies, 326: S43-S48.
35. Maciuszonek, A., Grajewski, B. & Bednarczyk, M., 2005. RAPD-PCR analysis of various goose populations. Folia Biologics, 53: 83-85.
36. Min, M. S., Okumura, H., Jo, D. J., An, J. H., Kim, K. S., Kim, C. B., Shin, N. S., Lee, M. H., Han, C. H., Voloshina, I. V. & Lee, H., 2004. Molecular phylogenetic status of the Korean goral and Japanese serow based on partial sequences of the mitochondrial cytochrome b gene. Molecular Cells, 17: 365-372.
37. Na-Nakorn, U., Sukmanomon, S., Nakajima, M., Taniguchi, N., Kamonrat, W., Poompuang, S. & Nguyen, T. T. T., 2006. MtDNA diversity of the critically endangered Mekong giant catfish (Pangasianodon gigas Chevey, 1913) and closely related species: implications for conservation. Animal Conservation, 9: 483-494.
38. Onuma, M., Suzuki, M. & Ohtaishi, N., 2006. Possible conservation units of the sun bear (Helarctos malayanus) in Sarawak based on variation of mtDNA control region. Japanese Journal of Veterinary Research, 54: 135-139.
39. Padilla, J. A., Martínez-Trancón, M., Rabasco, A., Parejo, J. C., Sansinforiano, M. E. & Guijo, M. I., 2000. Genetic variability in the Iberian imperial eagle (Aquila adalberti) demonstrated by RAPD analysis. Journal of Heredity, 91: 495-499.
40. Parejo, J. C., Padilla, J. A., Rabasco, A., Sansinforiano, M. E. & Martinez-Trancón, M. 2002. Population structure in the endangered Blanca Cacereña bovine breed demonstrated by RAPD analyses. Genes and Genetic Systems, 77: 51-58.
41. Pesole, G., Gissi, C., De Chirico, A. & Saccone, C., 1999. Nucleotide substitution rate of mammalian mitochondrial genomes. Journal of Molecular Evolution, 48: 427-434.
42. Rach, J., Desalle, R., Sarkar, I. N., Schierwater, B. & Hadrys, H., 2008. Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata. Proceedings: Biological Sciences, 275: 237-247.
43. Ralls, K. & Ballou, J., 1983. Extinctions: lessons from zoos. In: Genetics and conservation: A reference for managing wild animal and plany populations: 64-184 (C. M. Schonewald-Cox, S. M. Chambers, B. MacBryde & L. Thomas, Eds.). Benjamin Cummings Publishing Company, Inc., California.
44. Rodrigues, F. P., Garcia, J. F., Ramos, P. R., Bortolozzi, J. & Duarte, J. M., 2007. Genetic diversity of two Brazilian populations of the Pampas deer (Ozotoceros bezoarticus, Linnaeus 1758). Brazilian Journal of Biology, 67: 805-811.
45. Russello, M. A. & Amato, G., 2004. Ex situ population management in the absence of pedigree information. Molecular Ecology, 13: 2829-2840.
46. Ryberg, W. A., Fitzgerald, L. A., Honeycutt, R. L. & Cathey, J. C., 2002. Genetic relationships of American alligator populations distributed across different ecological and geographic scales. Journal of Experimental Zoology, 294: 325-333.
47. Saccheri, I., Kuussaari, M., Kankare, M., Vikman, P., Fortelius, W. & Hanski, I., 1998. Inbreeding and extinction in a butterfly metapopulation. Nature, 392: 491-494.
48. Smith, M. A., Woodley, N. E., Janzen, D. H., Hallwachs, W. & Hebert, P. D., 2006. DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proceedings of National Academy of Sciences USA, 103: 3657-3662.
49. Sunnucks, P., 2000. Efficient genetic markers for population biology. Trends in Ecology and Evolution, 15: 199-203.
50. Takami, Y., Koshio, C., Ishii, M., Fujii, H., Hidaka, T. & Shimizu, I., 2004. Genetic diversity and structure of urban populations of Pieris butterflies assessed using amplified fragment length polymorphism. Molecular Ecology, 13: 245-258.
51. Turan, C., 2008. Molecular Systematic Analyses of Mediterranean Skates (Rajiformes). Turkish Journal of Zoology, 32: 1-6.
52. Van der Kuyl, A. C., Ballasina, D. L. P. & Zorgdrager, F., 2005. Mitochondrial haplotype diversity in the tortoise species Testudo graeca from North Africa and the Middle East. BMC Evolutionary Biology, 5: 29.
53. Westemeier, R. L., Brawn, J. D., Simpson, S. A., Esker, R. W., Jansen, R. W., Walk, J. W., Kershner, E. L., Bouzat, J. L. & Paige, K. N., 1998. Tracking the long-term decline and recovery of an isolated population. Science, 282: 1695-1698.
54. Witt, J. D., Threloff, D. L. & Hebert, P. D., 2006. DNA barcoding reveals extraordinary cryptic diversity in an amphipod genus: implications for desert spring conservation. Molecular Ecology, 15: 3073-3082.
55. Wu, H. L., Wan, Q. H. & Fang, S. G., 2006. Population structure and gene flow among wild populations of the black muntjac (Muntiacus crinifrons) based on mitochondrial DNA control region sequences. Zoological Science, 23: 333-340.
56. Yue, G. H., Li, Y., Lim, L. C. & Orban, L., 2004. Monitoring the genetic diversity of three Asian arowana (Scleropages formosus) captive stocks using AFLP and microsatellites. Aquaculture, 237: 89-102.
57. Zhang, F. & Jiang, Z., 2006. Mitochondrial phylogeography and genetic diversity of Tibetan gazelle (Procapra picticaudata): implications for conservation. Molecular Phylogenetics and Evolution, 41: 313-321.
58. Zenger, K. R., Stow, A. J., Peddemors, V., Briscoe, D. A. & Harcourt, R. G., 2006. Widespread utility of highly informative AFLP molecular markers across divergent shark species. Journal of Heredity, 97: 607-611.