Enrichment of bacteria possessing catechol dioxygenase genes in the rhizosphere of Spirodela polyrrhiza: A mechanism of accelerated biodegradation of phenol

Water Research

Volumn 43, Issue 15, 2009, Pages 3765-3776

  Toyama, Tadashi ^a   Sei, Kazunari ^b   Yu, Ning ^b   Kumada, Hirohide ^b   Inoue, Daisuke ^b   Hoang, Hai ^b   Soda, Satoshi ^b   Chang, Young Cheol ^a   Kikuchi, Shintaro ^a   Fujita, Masanori ^b,c   Ike, Michihiko ^b  

^a MURORAN INSTITUTE OF TECHNOLOGY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c KOCHI NATIONAL COLLEGE OF TECHNOLOGY   (Japan)

Author keywords

Accelerated degradation of aromatic compounds; Microbial community structure; Rhizosphere; Selective accumulation of aromatic compound degrading bacteria; Spirodela polyrrhiza

Indexed keywords

AROMATIZATION; BACTERIA; BIODEGRADATION; GENES; PHENOLS; POLYMERASE CHAIN REACTION; SOILS;

ACCELERATED DEGRADATION; ACCELERATED DEGRADATION OF AROMATIC COMPOUND; BULK WATER; DEGRADING BACTERIA; DIOXYGENASE GENES; DIOXYGENASES; MICROBIAL COMMUNITY STRUCTURES; RHIZOSPHERE; SELECTIVE ACCUMULATION OF AROMATIC COMPOUND-DEGRADING BACTERIA; SPIRODELUM POLYRRHIZUM;

DNA;

CATECHOL 1,2 DIOXYGENASE; CATECHOL 2,3 DIOXYGENASE; PHENOL;

BACTERIUM; BIODEGRADATION; COMMUNITY STRUCTURE; DNA; MICROBIAL COMMUNITY; PHENOL; RHIZOSPHERE;

ARTICLE; BACTERIAL GENE; BIODEGRADATION; COMMUNITY STRUCTURE; CONTROLLED STUDY; DNA SEQUENCE; MICROBIAL COMMUNITY; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RHIZOSPHERE; SPIRODELA POLYRRHIZA; WATER SAMPLING; WEED;

BACTERIA (MICROORGANISMS); SPIRODELA POLYRRHIZA;

EID: 67651148412     PISSN: 00431354     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.watres.2009.05.045     Document Type: Article

References (20)

1. Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59 (1995) 143-169
2. American Public Health Association (APHA), Water Environment Federation, and American Water Works Association. Standard Methods for Examination of Water and Wastewater. 20th ed. Section 5530 Phenols (1998), APHA, Washington, DC
3. Anderson T.A., Guthrie E.A., and Walton B.T. Bioremediation in the rhizosphere: plant roots and associated microbes clean contaminated soil. Environ. Sci. Technol. 27 (1993) 2630-2636
4. Harayama S., and Rekik M. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J. Biol. Chem. 264 (1989) 15328-15333
5. Harwood C.S., and Parales R.E. The β-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50 (1996) 553-590
6. Iwamoto T., Tani K., Nakamura K., Suzuki Y., Kitagawa M., Eguchi M., and Nasu M. Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE. FEMS Microbiol. Ecol. 32 (2002) 129-141
7. Kamath R., Schnoor J.L., and Alvarez P.J.J. Effect of root-derived substrates on the expression of nah-lux genes in Pseudomonas fluorescens HK44: implications for PAH biodegradation in the rhizosphere. Environ. Sci. Technol. 38 (2004) 1740-1745
8. Kohno T., and Fukunaga S. The "cut-off probability" as the measure of quantal improbability in the dilution method. Water Res. 32 (1998) 3099-3107
9. Mori K., Toyama T., and Sei K. Surfactants degrading activities in the rhizosphere of giant duckweed (Spirodela polyrrhiza). Jpn. J. Water Treat. Biol. 41 (2005) 129-140
10. Nishihara T., Yamada T., Takano K., Osada S., Nishikawa J., and Imagawa M. Characterization of pheB gene encoding catechol 2,3-dioxygenase. Lett. Appl. Microbiol. 19 (1994) 181-183
11. Sei K., Asano K., Tateishi N., Mori K., Ike M., and Fujita M. Design of PCR primers and gene probes for the general detection of bacterial populations capable of degrading aromatic compounds via catechol cleavage pathways. J. Biosci. Bioeng. 88 (1999) 542-550
12. Sei K., Asano K., Tateishi K., Mori K., Ike M., Kohno T., and Fujita M. Development of simple methods of DNA extraction from environmental samples for monitoring microbial community based on PCR. Jpn. J. Water Treat. Biol. 36 (2000) 193-204
13. Sei K., Inoue D., Wada K., Mori K., Ike M., Kohno T., and Fujita M. Monitoring behaviour of catabolic genes and change of microbial community structure in seawater microcosms during aromatic compound degradation. Water Res. 38 (2004) 4405-4414
14. Shaw L.J., and Burns R.G. Biodegradation of organic pollutants in the rhizosphere. Adv. Appl. Microbiol. 53 (2003) 1-60
15. Singer A.C., Crowley D.E., and Thompson I.P. Secondary plant metabolites in phytoremediation and biotransformation. Trends Biotechnol. 21 (2003) 123-130
16. Smith M.R. The biodegradation of aromatic hydrocarbons by bacteria. Biodegradation 1 (1990) 191-206
17. Toyama T., Yoshinaka M., Sei K., Ike M., and Fujita M. Accelerated degradation of aromatic compounds utilizing synergy between Pistia stratiotes L. and rhizosphere microbes. Environ. Eng. Res. 42 (2005) 475-486 (in Japanese)
18. Toyama T., Yu N., Kumada H., Sei K., Ike M., and Fujita M. Accelerated aromatic compounds degradation in aquatic environment by use of interaction between Spirodela polyrrhiza and bacteria in its rhizosphere. J. Biosci. Bioeng. 101 (2006) 346-353
19. Tripathi B.D., Srivastava J., and Misra K. Nitrogen and phosphorus removal-capacity of four chosen aquatic macrophytes in tropical freshwater ponds. Environ. Conserv. 18 (1991) 143-147
20. Watanabe K., Hino S., Onodera K., Kajie S., and Takahashi N. Diversity in kinetics of bacterial phenol-oxygenating activity. J. Ferment. Bioeng. 81 (1996) 560-563