Lysinibacillus parviboronicapiens sp. nov., a low-boron-containing bacterium isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 6, 2009, Pages 1427-1432

  Miwa, Hiroki ^a,b   Ahmed, Iftikhar ^a,c   Yokota, Akira ^a   Fujiwara, Toru ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NATIONAL AGRICULTURAL RESEARCH CENTRE   (Pakistan)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ASPARTIC ACID; BACTERIAL DNA; BORON; CELL MEMBRANE PROTEIN; CYTOSINE; FATTY ACID; GENOMIC DNA; GLUTAMIC ACID; GUANINE; LYSINE; PEPTIDOGLYCAN; QUINONE DERIVATIVE; RNA 16S; RIBOSOME DNA;

AMINO ACID ANALYSIS; ARTICLE; BACILLUS; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; COMPARATIVE STUDY; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA CONTENT; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GRAM POSITIVE BACTERIUM; LIPID COMPOSITION; LYSINIBACILLUS FUSIFORMIS; LYSINIBACILLUS PARVIBORONICAPIENS; LYSINIBACILLUS SPHAERICUS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; RNA SEQUENCE; SALT TOLERANCE; SEQUENCE ANALYSIS; SPECIES COMPARISON; TEMPERATURE SENSITIVITY; CLASSIFICATION; DNA SEQUENCE; GENETICS; GRAM POSITIVE ASPOROGENOUS ROD-SHAPED BACTERIA; ISOLATION AND PURIFICATION; METABOLISM; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PHENOTYPE; PHYSIOLOGY; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPECIES DIFFERENCE; TURKEY (REPUBLIC);

BACTERIA (MICROORGANISMS); POSIBACTERIA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BORON; DNA, BACTERIAL; DNA, RIBOSOMAL; GENOTYPE; GRAM-POSITIVE ASPOROGENOUS RODS; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; TURKEY;

EID: 67651123136     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65455-0     Document Type: Article

References (35)

1. Ahmed, I., Yokota, A. & Fujiwara, T. (2007a). A novel highly borontolerant bacterium, Bacillus boroniphilus sp. nov., isolated from soil, that requires boron for its growth. Extremophiles 11, 217-224.
2. Ahmed, I., Yokota, A. & Fujiwara, T. (2007b). Gracilibacillus boraciitolerans sp. nov., a highly boron-tolerant and moderately halotolerant bacterium isolated from soil. Int J Syst Evol Microbiol 57, 796-802.
3. Ahmed, I., Yokota, A. & Fujiwara, T. (2007c). Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil. Int J Syst Evol Microbiol 57, 986-992.
4. Ahmed, I., Yokota, A., Yamazoe, A. & Fujiwara, T. (2007d). Proposal of Lysinibacillus boronitolerans gen. nov., sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int J Syst Evol Microbiol 57, 1117-1125.
5. Bolaños, L., Redondo-Nieto, M., Bonilla, I. & Wall, L. G. (2002). Boron requirement in the Discaria trinervis (Rhamnaceae) and Frankia symbiotic relationship. Its essentiality for Frankia BCU110501 growth and nitrogen fixation. Physiol Plant 115, 563-570.
6. Bonilla, I., Garcâ-González, M. & Mateo, P. (1990). Boron requirement in cyanobacteria. Its possible role in the early evolution of photosynthetic organisms. Plant Physiol 94, 1554-1560.
7. Chen, X., Schauder, S., Potier, N., Dorsselaer, A. V., Pelczer, I., Bassler, B. L. & Hughson, F. M. (2002). Structural identification of a bacterial quorum-sensing signal containing boron. Nature 415, 545-549.
8. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
9. Çöl, M. & Çöl, C. (2003). Environmental boron contamination in waters of the Hisarcik area in the Kutahya Province of Turkey. Food Chem Toxicol 41, 1417-1420.
10. Cowan, S. T. (1974). Cowan and Steel's Manual for the Identification of Medical Bacteria, 2nd edn. London: Cambridge University Press.
11. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
12. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
13. Gupta, S. K. & Stewart, J. W. B. (1975). The extraction and determination of plant-available boron in soils. Schweiz Landwirtsch Forsch 14, 153-169.
14. Katsivela, E., Bonse, D., Krüger, A., Strömpl, C., Livingston, A. & Ittich, R.-M. (1999). An extractive membrane biofilm reactor for degradation of 1,3-dichloropropene in industrial wastewater. Appl Microbiol Biotechnol 52, 853-862.
15. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
16. Kudo, T. (2001). Phospholipids. In Identification Manual of Bacteria: Molecular Genetics and Molecular Biological Methods, Springer Lab Manual, pp. 135-144. Edited by K. Suzuki, A. Hiraishi & A. Yokota. Tokyo: Springer. ISBN: 4-431-70930-4 C3045 (in Japanese).
17. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
18. La Duc, M. T., Satomi, M. & Venkateswaran, K. (2004). Bacillus odysseyi sp. nov., a round-spore-forming bacillus isolated from the Mars Odyssey spacecraft. Int J Syst Evol Microbiol 54, 195-201.
19. Loomis, W. D. & Durst, R. W. (1992). Chemistry and biology of boron. Biofactors 3, 229-239.
20. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
21. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
22. Miwa, H., Ahmed, I., Yoon, J., Yokota, A. & Fujiwara, T. (2008). Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil. Int J Syst Evol Microbiol 58, 286-289.
23. Nielsen, F. H. (2004). Boron. In Elements and their Compounds in the Environment, 2nd edn, pp. 1251-1260. Edited by E. Merian, M. Anke, M. Ihnat & M. Stoeppler. Weinheim: Wiley-VCH.
24. Otero, L., Palacio, V., Mendez, F. J. & Vazquez, F. (2002). Boric acid susceptibility testing of non-C. albicans Candida and Saccharomyces cerevisiae: comparison of three methods. Med Mycol 40, 319-322.
25. Priest, F. G., Goodfellow, M. & Todd, C. (1988). A numerical classification of the genus Bacillus. J Gen Microbiol 134, 1847-1882.
26. Rowe, R. I. & Eckhert, C. D. (1999). Boron is required for zebrafish embryogenesis. J Exp Biol 202, 1649-1654.
27. Rowe, R. I., Bouzan, C., Nabili, S. & Eckhert, C. D. (1998). The response of trout and zebrafish embryos to low and high boron concentrations is U-shaped. Biol Trace Elem Res 66, 261-270.
28. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
29. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
30. Swate, T. E. & Weed, J. C. (1974). Boric acid treatment of vulvovaginal candidiasis. Obstet Gynecol 43, 893-895.
31. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
32. Warington, K. (1923). The effect of boric acid and borax on the broad bean and certain other plants. Ann Bot (Lond) 37, 629-672.
33. Xie, C. H. & Yokota, A. (2003). Phylogenetic analysis of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
34. Yoon, J., Maneerat, S., Kawai, F. & Yokota, A. (2006). Myroides pelagicus sp. nov., isolated from seawater in Thailand. Int J Syst Evol Microbiol 56, 1917-1920.
35. Yumoto, I., Hirota, K., Yamaga, S., Nodasaka, Y., Kawasaki, T., Matsuyama, H. & Nakajima, K. (2004). Bacillus asahii sp. nov., a novel bacterium isolated from soil with the ability to deodorize the bad smell generated from short-chain fatty acids. Int J Syst Evol Microbiol 54, 1997-2001.