Herminiimonas glaciei sp. nov., a novel ultramicrobacterium from 3042 m deep Greenland glacial ice

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 6, 2009, Pages 1272-1277

  Loveland Curtze, Jennifer ^a   Miteva, Vanya I ^a   Brenchley, Jean E ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; AMPICILLIN; ARABINOSE; BACITRACIN; CATALASE; CHLORAMPHENICOL; CIPROFLOXACIN; CITRIC ACID; GENTAMICIN; LACTIC ACID; MALIC ACID; NALIDIXIC ACID; NEOMYCIN; OXIDOREDUCTASE; PENICILLIN G; RIBOSE; RIFAMPICIN; RNA 16S; STREPTOMYCIN; SUCCINIC ACID; TETRACYCLINE; VANCOMYCIN; XYLOSE; BACTERIAL DNA; FATTY ACID; ICE; RIBOSOME DNA;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL CELL; BACTERIAL COLONIZATION; BACTERIAL STRAIN; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENUS; GLACIER; GRAM NEGATIVE BACTERIUM; HERMINIIMONAS GLACIEI; LIPID COMPOSITION; MICROBIAL MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OXALOBACTERACEAE; PRIORITY JOURNAL; RNA GENE; SEQUENCE ANALYSIS; SPECIES DIFFERENTIATION; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; GREENLAND; ICE COVER; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; SPECIES DIFFERENCE;

BETAPROTEOBACTERIA; HERMINIIMONAS; HERMINIIMONAS AQUATILIS; HERMINIIMONAS FONTICOLA; NEGIBACTERIA; OXALOBACTERACEAE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENOTYPE; GREENLAND; ICE; ICE COVER; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXALOBACTERACEAE; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67651091762     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.001685-0     Document Type: Article

References (19)

1. Audic, S., Robert, C., Campagna, B., Parinello, H., Claverie, J.-M., Raoult, D. & Drancourt, M. (2007). Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. PLoS Genet 3, e138.
2. Cavicchioli, R. & Ostrowski, M. (2003). Ultramicrobacteria. Encyclopedia of Life Sciences. Macmillan Publishers Ltd, Nature Publishing Group. http://www.els.net.
3. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
4. Fernandes, C., Rainey, F. A., Nobre, M. F., Pinhal, I., Folhas, F. & da Costa, M. S. (2005). Herminiimonas fonticola gen. nov., sp. nov., a Betaproteobacterium isolated from a source of bottled mineral water. Syst Appl Microbiol 28, 596-603.
5. Iizuka, T., Yamanaka, S., Nishiyama, T. & Hiraishi, A. (1998). Isolation and phylogenetic analysis of aerobic copiotrophic ultra-microbacteria from urban soil. J Gen Appl Microbiol 44, 75-84.
6. Janssen, P. H., Schuhmann, A., Morschel, E. & Rainey, F. A. (1997). Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 63, 1382-1388.
7. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
8. Kämpfer, P., Busse, H.-J. & Falsen, E. (2006). Herminiimonas aquatilis sp. nov., a new species from drinking water. Syst Appl Microbiol 29, 287-291.
9. Lang, E., Swiderski, J., Stackebrandt, E., Schumann, P., Spröer, C. & Sahin, N. (2007). Herminiimonas saxobsidens sp. nov., isolated from a lichen-colonized rock. Int J Syst Evol Microbiol 57, 2618-2622.
10. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
11. Männistö, M. K. & Häggblom, M. M. (2006). Characterization of psychrotolerant heterotrophic bacteria from Finnish Lapland. Syst Appl Microbiol 29, 229-243.
12. Miller, J. (1992). A Short Course in Bacterial Genetics: a Laboratory Manual and Handbook for Escherichia coli. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
13. Miteva, V. I. & Brenchley, J. E. (2005). Detection and isolation of ultrasmall microorganisms from a 120,000-year-old Greenland glacier ice core. Appl Environ Microbiol 71, 7806-7818.
14. Muller, D., Simeonova, D. D., Riegel, P., Mangenot, S., Koechler, S., Liévremont, D., Bertin, P. N. & Lett, M.-C. (2006). Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium. Int J Syst Evol Microbiol 56, 1765-1769.
15. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
16. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. V. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: ASM.
17. Sokol, P. A., Ohman, D. E. & Iglewski, B. H. (1979). A more sensitive plate assay for detection of protease production by Pseudomonas aeruginosa. J Clin Microbiol 9, 538-540.
18. Swofford, D. L. (2002). PAUP*: Phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinauer Associates.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.