Mitochondrial haplogroups associated with Japanese centenarians, Alzheimer's patients, Parkinson's patients, type 2 diabetic patients and healthy non-obese young males

Journal of Genetics and Genomics

Volumn 36, Issue 7, 2009, Pages 425-434

  Takasaki, Shigeru ^a  

^a TOYO UNIVERSITY   (Japan)

Author keywords

Alzheimer's disease; centenarians; haplogroup; healthy non obese young males; mtSNPs; Parkinson's disease; radial basis function (RBF); semi supercentenarians; type 2 diabetic patients

Indexed keywords

MITOCHONDRIAL DNA;

ALZHEIMER DISEASE; ARTICLE; CONTROLLED STUDY; DIAGNOSTIC TEST; HUMAN; JAPANESE; MAJOR CLINICAL STUDY; MALE; MITOCHONDRIAL GENOME; NON INSULIN DEPENDENT DIABETES MELLITUS; PARKINSON DISEASE; RADIAL BASIS FUNCTION; SINGLE NUCLEOTIDE POLYMORPHISM;

ADULT; AGED, 80 AND OVER; ALZHEIMER DISEASE; ASIAN CONTINENTAL ANCESTRY GROUP; CASE-CONTROL STUDIES; DIABETES MELLITUS, TYPE 2; HAPLOTYPES; HUMANS; LONGEVITY; MALE; MITOCHONDRIA; OBESITY; PARKINSON DISEASE; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 67650976561     PISSN: 16738527     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1673-8527(08)60132-0     Document Type: Article

References (29)

1. Alexe G., Fuku N., Bilal E., Ueno H., Nishigaki Y., Fujita Y., Ito M., Arai Y., Hirose N., Bhanot G., and Tanaka M. Enrichment of longevity phenotype in mtDNA haplogroups D4b2b, D4a, and D4 in the Japanese population. Hum. Genet. 121 (2007) 347-356
2. Bilal E., Rabadan R., Alexe G., Fuku N., Ueno H., Nishigaki Y., Fujita Y., Ito M., Arai Y., Hirose N., Ruckenstein A., Bhanot G., and Tanaka M. Mitochondrial DNA haplogroup D4a is a marker for extreme longevity in Japan. PLoS ONE 3 (2008) e2421
3. Chinnery P.F., Mowbray C., Patel S.K., Elson J.L., Sampson M., Hitman G.A., McCarthy M.I., Hattersley A.T., and Walker M. Mitochondrial DNA haplogroups and type 2 diabetes: A study of 897 cases and 1010 controls. J. Med. Genet. 44 (2008) e80
4. Dawson T.M., and Dawson V.L. Molecular pathway of neurodegeneration in Parkinson's disease. Science 302 (2003) 819-822
5. Fuku N., Park K.S., Yamada Y., Nishigaki Y., Cho Y.M., Matsuo H., Segawa T., Watanabe S., Kato K., Yokoi K., Nozawa Y., Lee K.H., and Tanaka M. Mitochondrial haplogroup N9a confers resistance against Type 2 diabetes in Asians. Am. J. Hum. Genet. 80 (2007) 407-415
6. Feder J., Blech I., Ovadia O., Amar S., Wainstein J., Raz I., Dadon S., Arking D.E., Glaser B., and Mishmar D. Differences in mtDNA haplogroup distribution among 3 Jewish populations alter susceptibility to T2DM complications. BMC Genomics 9 (2008) 198
7. Herrnstadt C., Elson J.L., Fahy E., Preston G., Turnbull D.M., Anderson C., Ghosh S.S., Olefsky J.M., Beal M.F., Davis R.E., and Howell N. Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian and European haplogroups. Am. J. Hum. Genet. 70 (2002) 1152-1171
8. Kim W., Yoo T.K., Shin D.J., Rho H.W., Jin H.J., Kim E.T., and Bae Y.S. Mitochondrial haplogroup analysis reveals no association between the common genetic lineages and prostate cancer in the Korean population. PLoS ONE 3 (2008) e2211
9. Kosel S., Egensperger R., Mehraein P., and Graeber M.B. No association of mutations at nucleotide 5460 of mitochondrial NADH dehydrogenase with Alzheimer's disease. Biochem. Biophys. Res. Commun. 203 (1994) 745-749
10. Kong Q.P., Yao Y.G., Sun C., Bandelt H.J., Zhu C.L., and Zhang Y.P. Phylogeny of East Asian mitochondrial DNA lineages inferred from complete sequences. Am. J. Hum. Genet. 73 (2003) 671-676
11. Kong Q.P., Salas A., Sun C., Fuku N., Tanaka M., Zhong L., Wang C.Y., Yao Y.G., and Bandelt H.J. Distilling artificial recombinants from large sets of complete mtDNA genomes. PLoS ONE 3 (2008) e3016
12. Lin F., Lin R., Wisniewski H.M., Hwang Y., Grundke-Iqbal I., Healy-Louie G., and Iqbal K. Detection of point mutations in codon 331 of mitochondrial NADH dehydrogenase subunit 2 in Alzheimer's brains. Biochem. Biophys. Res. Commun. 182 (1992) 238-246
13. Lustbader J.W., Cirilli M., Lin C., Xu H.W., Takuma K., Wang N., Caspersen C., Chen X., Pollak S., Chaney M., Trinchese F., Liu S., Gunn-Moore F., Lue L.F., Walker D.G., Kuppusamy P., Zewier Z.L., Arancio O., Stern D., Yan S.S., and Wu H. ABAD directly links Aβ to mitochondrial toxicity in Alzheimer's disease. Science 304 (2004) 448-452
14. Mayr-Wohlfart U., Paulus C., and Rodel G. Mitochondrial DNA mutations in multiple sclerosis patients with severe optic involvement. Acta Neurol. Scand. 94 (1996) 167-171
15. Maruszak A., Canter J.A., Styczynska M., Zekanowski C., and Barcikowska M. Mitochondrial haplogroup H and Alzheimer's disease-Is there a connection?. Neurobiol. Aging (2008) 10.1016/j.neurobiolaging.2008.01.004
16. Niemi A.K., Moilanen J.S., Tanaka M., Hervonen A., Hurme M., Lehtimaki T., Arai Y., Hirose N., and Majamaa K.A. A combination of three common inherited mitochondrial DNA polymorphisms promotes longevity in Finnish and Japanese subjects. Eur. J. Hum. Genet. 13 (2005) 166-170
17. Poggio T., and Girosi F. Networks for approximation and learning. Proc. IEEE 78 (1990) 1481-1497
18. Ross O.A., MaCormack R., Maxwell L.D., Duguid R.A., Quinn D.J., Barnett Y.A., Rea I.M., El-Agnaf O.M., Gibson J.M., Wallace A., Middleton D., and Curran M.D. mt4216C variant in linkage with the mtDNA TJ cluster may confer a susceptibility to mitochondrial dysfunction resulting in an increased risk of Parkinson's disease in the Irish. Exp. Gerontol. 38 (2003) 397-405
19. Saxena R., de Bakker P.I., Singer K., Mootha V., Burtt N., Hirschhorn J.N., Gaudet D., Isomaa B., Daly M.J., Groop L., Ardlie K.G., and Altshuler D. Comprehensive association testing of common mitochondrial DNA variation in metabolic disease. Am. J. Hum. Genet. 79 (2006) 54-61
20. Schoffner J.M., Brown M.D., Torroni A., Lott M.T., Cabell M.F., Miorra S.S., Beal M.F., Yang C.C., Gearing M., Salvo R., Watts R.L., Juncos J.L., Hansen L.A., Crain B.J., Fayad M., Reckord C.L., and Wallace D.C. Mitochondrial DNA variants observed in Alzheimer disease and Parkinson disease patients. Genomics 17 (1993) 171-184
21. Schnopp N.M., Kosel S., Egensperger R., and Graeber M.B. Regional heterogeneity of mtDNA hetroplasmy in parkinsonian brain. Clin. Neuropathol. 15 (1996) 348-352
22. Simon D.K., Mayeux R., Marder K., Kowall N.W., Beal M.F., and Jons D.R. Mitochondrial DNA mutations in complex I and tRNA genes in Parkinson's disease. Neurology 54 (2000) 703-709
23. Tanaka M., Fuku N., Takeyasu T., Guo L.J., Hirose R., Kurata M., Borgeld H.J., Yamada Y., Maruyama W., Arai Y., Hirose N., Oshida Y., Sato Y., Hattori N., Mizuno Y., Iwata S., and Yagi K. Golden mean to longevity: Rareness of mitochondrial cytochrome b variants in centenarians but not in patients with Parkinson's disease. J. Neurosci. Res. 70 (2002) 347-355
24. Tanaka M., Cabrera V.M., Gonzalez A.M., Larruga J.M., Takeyasu T., Fuku N., Guo L.J., Hirose R., Fujita Y., Kurata M., Shinoda K., Umetsu K., Yamada Y., Oshida Y., Sato Y., Hattori N., Mizuno Y., Arai Y., Hirose N., Ohta S., Ogawa O., Tanaka Y., Kawamori R., Shamoto-Nagai M., Maruyama W., Shimokata H., Suzuki R., and Shimodaira H. Mitochondrial genome variation in Eastern Asia and the peopling of Japan. Genome Res. 14 (2004) 1832-1850
25. Takasaki S., Kawamura Y., and Konagaya A. Selecting effective siRNA sequences by using radial basis function network and decision tree learning. BMC Bioinformatics 7 Suppl 5 (2006) S22
26. Taylor R.W., and Turnbull D.M. Mitochondrial DNA mutations in human disease. Nat. Rev. Genet. 6 (2005) 389-402
27. Vila M., and Przedborski S. Targeting programmed cell death neurodegenerative diseases. Nat. Rev. Neurosci. 4 (2003) 1-11
28. Wallace D.C. Mitochondrial diseases in man and mouse. Science 283 (1999) 1482-1488
29. Wu C.H., and McLarty J.W. Neural Networks and Genome Informatics (2000), Elsevier Science Ltd., NY