Bacterial communities developing during composting processes in animal manure treatment facilities

Asian-Australasian Journal of Animal Sciences

Volumn 22, Issue 6, 2009, Pages 900-905

  Yamamoto, Nozomi ^a   Otawa, Kenichi ^a   Nakai, Yutaka ^a  

^a TOHOKU UNIVERSITY   (Japan)

Author keywords

16S rRNA gene; Animal manure; Bacteria; Composting; PCR DGGE

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; FIRMICUTES; PROTEOBACTERIA;

EID: 67650941873     PISSN: 10112367     EISSN: None     Source Type: Journal    
DOI: 10.5713/ajas.2009.80663     Document Type: Article

References (21)

1. Arbeli, Z. and C. L. Fuentes. 2007. Improved purification and PCR amplification of DNA from environmental samples. FEMS Microbiol. Lett., 272:269-275.
2. Asano, R., T. Sasaki and Y. Nakai. 2007. Isolation and characterization of sulfur oxidizing bacteria from cattle manure compost. Anim. Sci. J. 78:330-333.
3. Beffa, T., M. Blanc, P. F. Lyon, G Vogt, M. Marchiani, J. L. Fischer and M. Aragno. 1996. Isolation of thermus strains from hot composts (60 to 80°C). Appl. Environ. Microbiol. 62:1723-1727.
4. Dees, P. M. and W. C. Ghiorse. 2001. Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol. Ecol. 35:207-216.
5. Green, S. J., F. C. Michel Jr., Y. Hadar and D. Minz. 2004. Similarity of bacterial communities in sawdust- and straw-amended cow manure composts. FEMS Microbiol. Lett. 233: 115-123.
6. Insam, H., N. Riddech and S. Klammer. 2002. Microbiology of composting. Springer Science+Business Media, Berlin, Germany.
7. Ishii, K., M. Fukui and S. Takii. 2000. Microbial succession during a composting process as evaluated by denaturing gel electrophoresis analysis. J. Appl. Microbiol. 89:768-777.
8. Haga, K. 1999. Development of composting technology in animal waste treatment. Asian-Aust. J. Anim. Sci. 12:604-606.
9. Hall, J. E. 1999. Nutrient recycling: the European experience. Asian-Aust. J. Anim. Sci. 12:667-674.
10. Harada, Y. 1992. Composting and land application of animal wastes. Asian-Aust. J. Anim. Sci. 5:113-121.
11. Kaku, K., A. Ikeguchi, A. Ogino, T. Osada, M. Hojito and K. Shimada. 2004. Achieving a nitrogen balance for Japanese domestic livestock waste: testing the scenario of planting feed grain in land left fallow. Asian-Aust. J. Anim. Sci. 17:1026-1032.
12. Kowalchuk, G A., Z. S. Naoumenko, P. J. L. Derikx, A. Felske, J. R. Stephen and I. A. Arkhipchenko. 1999. Molecular analysis of ammonia-oxidizing bacteria of the β subdivision of the Class proteobacteria in compost and composted materials. Appl. Environ. Microbiol. 65:396-403.
13. Muyzer, G, E. C. de Waal and A. G Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700
14. Ozutsumi Y, H. Hayashi, M. Sakamoto, H. Itabashi and Y. Benno. 2005. Culture-independent analysis of fecal microbiota in cattle. Biosci. Biotechnol. Biochem. 69:1793-1797.
15. Pedoro, M. S., S. Haruta, M. Hazaka, R. Shimada, C. Yoshida, K. Hiura, M. Ishii and Y. Igarashi. 2001. Denaturing gradient gel electrophoresis analyses of microbial community from field-scale composter. J. Biosci. Bioeng. 2:159-165.
16. Sasaki, H., J. Nonaka, K. Otawa, O. Kitazume, R. Asano, T. Sasaki and Y. Nakai. 2009. Analysis of the structure of the bacterial community in the livestock manure-based composting process. Asian-Aust. J. Anim. Sci. 22:113-118.
17. Schloss, P. D., A. G Hay, D. B. Wilson and L. P. Walker. 2003. Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. FEMS Microbiol. Ecol. 46:1-9.
18. Taiganides, E. P. 1977. Composting of feedlot wastes. In: Animal wastes (Ed. E. P. Taiganides). Applied Science Publishers Ltd., Essex, England, pp. 241-252.
19. Takaku, H., S. Kodaira, A. Kimoto, M. Nashimoto and M. Takagi. 2006. Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and-independent approaches (Environmental Biotechnology). J. Biosci. Bioeng. 101:42-50.
20. Whitford, M. F., R. J. Forster, C. E. Beard, J. Gong and R. M. Teather. 1998. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe. 4:153-163.
21. Wiegel, J., R. Tanner and F. A. Rainey. 2006. An introduction to the family clostridiaceae. In: Prokaryotes Third Edition, volume 4 (Ed. M. Dworkin, D. Falkow, E. Rosenberg, K. H. Dchleifer and E. Stackebgandt). Springer Science+Business Media, LLC, New York, USA. pp. 654-678.