-
1
-
-
0037155206
-
Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors
-
DOI 10.1074/jbc.M110555200
-
R Akakura SC Winans 2002 Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors J Biol Chem 277 5866 5874 (Pubitemid 34968366)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.8
, pp. 5866-5874
-
-
Akakura, R.1
Winans, S.C.2
-
2
-
-
0023216678
-
Cloning and complete nucleotide sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzyme
-
DOI 10.1016/0378-1119(87)90045-X
-
TL Aldrich B Frantz JF Gill JJ Kilbane AM Chakrabarty 1987 Cloning and complete nucleotide sequence determination of the catB gene encoding cis, cis-muconate lactonizing enzyme Gene 52 185 195 (Pubitemid 17090747)
-
(1987)
Gene
, vol.52
, Issue.2-3
, pp. 185-195
-
-
Aldrich, T.L.1
Frantz, B.2
Gill, J.F.3
-
3
-
-
0019805971
-
Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas
-
M Bagdasarian R Lurz B Rückert FCH Franklin MM Bagdasarian J Frey KN Timmis 1981 Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas Gene 16 237 247
-
(1981)
Gene
, vol.16
, pp. 237-247
-
-
Bagdasarian, M.1
Lurz, R.2
Rückert, B.3
Franklin, F.C.H.4
Bagdasarian, M.M.5
Frey, J.6
Timmis, K.N.7
-
4
-
-
0031041234
-
Effector specificity mutants of the transcriptional activator NahR of naphthalene degrading Pseudomonas define protein sites involved in binding of aromatic inducers
-
DOI 10.1074/jbc.272.7.3986
-
A Cebolla C Sousa V de Lorenzo 1997 Effector specificity mutants of the transcriptional activator NahR of naphthalene degrading Pseudomonas define protein sites involved in binding of aromatic inducers J Biol Chem 272 3986 3992 (Pubitemid 27078458)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.7
, pp. 3986-3992
-
-
Cebolla, A.1
Sousa, C.2
De Lorenzo, V.3
-
5
-
-
0027389217
-
Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida
-
WM Coco RK Rothmel S Henikoff AM Chakrabarty 1993 Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida J Bacteriol 175 417 427 (Pubitemid 23032003)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.2
, pp. 417-427
-
-
Coco, W.M.1
Rothmel, R.K.2
Henikoff, S.3
Chakrabarty, A.M.4
-
6
-
-
23844550590
-
Residues that influence in vivo and in vitro CbbR function in Rhodobacter sphaeroides and identification of a specific region critical for co-inducer recognition
-
DOI 10.1111/j.1365-2958.2005.04783.x
-
AW Dangel JL Gibson AP Janssen FR Tabita 2005 Residues that influence in vivo and in vitro CbbR function in Rhodobacter sphaeroides and identification of a specific region critical for co-inducer recognition Mol Microbiol 57 1397 1414 (Pubitemid 41176531)
-
(2005)
Molecular Microbiology
, vol.57
, Issue.5
, pp. 1397-1414
-
-
Dangel, A.W.1
Gibson, J.L.2
Janssen, A.P.3
Tabita, F.R.4
-
7
-
-
0028358260
-
Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons
-
V de Lorenzo KN Timmis 1994 Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons Methods Enzymol 235 386 405
-
(1994)
Methods Enzymol
, vol.235
, pp. 386-405
-
-
De Lorenzo, V.1
Timmis, K.N.2
-
8
-
-
33847299961
-
Distinct Effector-binding Sites Enable Synergistic Transcriptional Activation by BenM, a LysR-type Regulator
-
DOI 10.1016/j.jmb.2006.09.090, PII S0022283606013258
-
OC Ezezika S Haddad TJ Clark EL Neidle C Momany 2007 Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator J Mol Biol 367 616 629 (Pubitemid 46330366)
-
(2007)
Journal of Molecular Biology
, vol.367
, Issue.3
, pp. 616-629
-
-
Ezezika, O.C.1
Haddad, S.2
Clark, T.J.3
Neidle, E.L.4
Momany, C.5
-
9
-
-
0025370615
-
Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters
-
MA Farinha AM Kropinski 1990 Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters J Bacteriol 172 3496 3499 (Pubitemid 20179813)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.6
, pp. 3496-3499
-
-
Farinha, M.A.1
Kropinski, A.M.2
-
10
-
-
0031014673
-
Identification of the inducing agent of the 2,4-dichlorophenoxyacetic acid pathway encoded by plasmid pJP4
-
K Filer AR Harker 1997 Identification of the inducing agent of the 2, 4-dichlorophenoxyacetic acid pathway encoded by plasmid pJP4 Appl Environ Microbiol 63 317 320 (Pubitemid 27020409)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.1
, pp. 317-320
-
-
Filer, K.1
Harker, A.R.2
-
11
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
DOI 10.1002/elps.1150181505
-
N Guex MC Peitsch 1997 SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 18 2714 2723 (Pubitemid 28059943)
-
(1997)
Electrophoresis
, vol.18
, Issue.15
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
13
-
-
0029285787
-
PCR-mediated recombination and mutagenesis. SOEing together tailor-made genes
-
RM Horton 1995 PCR-mediated recombination and mutagenesis. SOEing together tailor-made genes Mol Biotechnol 3 93 99
-
(1995)
Mol Biotechnol
, vol.3
, pp. 93-99
-
-
Horton, R.M.1
-
14
-
-
0001496876
-
Host-specific regulation of nodulation genes in Rhizobium is mediated by a plant-signal, interacting with the nodD gene product
-
B Horvath CWB Bachem J Schell A Kondorosi 1987 Host-specific regulation of nodulation genes in Rhizobium is mediated by a plant-signal, interacting with the nodD gene product Embo J 6 841 848
-
(1987)
Embo J
, vol.6
, pp. 841-848
-
-
Horvath, B.1
Bachem, C.W.B.2
Schell, J.3
Kondorosi, A.4
-
15
-
-
0033867694
-
Chromosomal integration of tcb chlorocatechol degradation pathway genes as a means of expanding the growth substrate range of bacteria to include haloaromatics
-
DOI 10.1128/AEM.66.8.3255-3261.2000
-
M Klemba B Jakobs R-M Witthich D Pieper 2000 Chromosomal integration of tcb chlorocatechol degradation pathway genes as a means of expanding the growth substrate range of bacteria to include haloaromatics Appl Environ Microbiol 66 3255 3261 (Pubitemid 30624565)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.8
, pp. 3255-3261
-
-
Klemba, M.1
Jakobs, B.2
Wittich, R.-M.3
Pieper, D.4
-
16
-
-
0024787144
-
Construction of a lacZ-kanamycin-resistance cassette, useful for site-directed mutagenesis and as a promoter probe
-
DOI 10.1016/0378-1119(89)90522-2
-
W Kokotek W Lotz 1989 Construction of a lacZ-kanamycin-resistance cassette, useful for site-directed mutagenesis and as a promoter probe Gene 84 467 471 (Pubitemid 20043794)
-
(1989)
Gene
, vol.84
, Issue.2
, pp. 467-471
-
-
Kokotek, W.1
Lotz, W.2
-
17
-
-
0028793123
-
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
-
ME Kovach PH Elzer DS Hill GT Robertson MA Farris RM Roop II KM Peterson 1995 Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes Gene 166 175 176
-
(1995)
Gene
, vol.166
, pp. 175-176
-
-
Kovach, M.E.1
Elzer, P.H.2
Hill, D.S.3
Robertson, G.T.4
Farris, M.A.5
Roop Ii, R.M.6
Peterson, K.M.7
-
18
-
-
0038377410
-
Expression of the nitroarene dioxygenase genes in Comamonas sp. strain JS765 and Acidovorax sp. strain JS42 is induced by multiple aromatic compounds
-
DOI 10.1128/JB.185.13.3895-3904.2003
-
DJ Lessner RE Parales S Narayan DT Gibson 2003 Expression of the nitroarene dioxygenase genes in Comamonas sp. strain JS765 and Acidovorax sp. strain JS42 is induced by multiple aromatic compounds J Bacteriol 185 3895 3904 (Pubitemid 36735941)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.13
, pp. 3895-3904
-
-
Lessner, D.J.1
Parales, R.E.2
Narayan, S.3
Gibson, D.T.4
-
19
-
-
0029852994
-
The tfdR gene product can successfully take over the role of the insertion element-inactivated tfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)
-
JHJ Leveau JR van der Meer 1996 The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4) J Bacteriol 178 6824 6832 (Pubitemid 26404958)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.23
, pp. 6824-6832
-
-
Leveau, J.H.J.1
Van Der Meer, J.R.2
-
20
-
-
0035795590
-
The chlorocatechol degradative genes, tfdT-CDEF, of Burkholderia sp. strain NK8 are involved in chlorobenzoate degradation and induced by chlorobenzoates and chlorocatechols
-
DOI 10.1016/S0378-1119(01)00435-8, PII S0378111901004358
-
S Liu N Ogawa K Miyashita 2001 The chlorocatechol degradative genes, tfdT-CDEF, of Burkholderia sp. strain NK8 are involved in chlorobenzoate degradation and induced by chlorobenzoates and chlorocatechols Gene 268 207 214 (Pubitemid 32463804)
-
(2001)
Gene
, vol.268
, Issue.1-2
, pp. 207-214
-
-
Liu, S.1
Ogawa, N.2
Miyashita, K.3
-
21
-
-
0035910541
-
Functional dissection of the LysR-type CysB transcriptional regulator. Regions important for DNA binding, inducer response, oligomerization, and positive control
-
DOI 10.1074/jbc.M007192200
-
A Lochowska R Iwanicka-Nowicka D Plochocka MM Hryniewicz 2001 Functional dissection of the LysR-type CysB transcriptional regulator. Regions important for DNA binding, inducer response, oligomerization, and positive control J Biol Chem 276 2098 2107 (Pubitemid 32109692)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.3
, pp. 2098-2107
-
-
Lochowska, A.1
Iwanicka-Nowicka, R.2
Plochocka, D.3
Hryniewicz, M.M.4
-
22
-
-
58949097886
-
Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
-
SE Maddocks PC Oyston 2008 Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins Microbiology 154 3609 3623
-
(2008)
Microbiology
, vol.154
, pp. 3609-3623
-
-
Maddocks, S.E.1
Oyston, P.C.2
-
23
-
-
0032570025
-
Transcriptional activation of the catechol and chlorocatechol operons: Variations on a theme
-
DOI 10.1016/S0378-1119(98)00366-7, PII S0378111998003667
-
SM McFall SA Chugani AM Chakrabarty 1998 Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme Gene 223 257 267 (Pubitemid 29015934)
-
(1998)
Gene
, vol.223
, Issue.1-2
, pp. 257-267
-
-
McFall, S.M.1
Chugani, S.A.2
Chakrabarty, A.M.3
-
24
-
-
0030974367
-
2-Chloromuconate and Clcr-mediated activation of the clcABD operon: In vitro transcriptional and DNase I footprint analyses
-
SM McFall MR Parsek AM Chakrabarty 1997 2-Chloromuconate and ClcR-mediated activation of the clcABD operon: in vitro transcriptional and DNase I footprint analyses J Bacteriol 179 3655 3663 (Pubitemid 27233006)
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.11
, pp. 3655-3663
-
-
Mcfall, S.M.1
Parsek, M.R.2
Chakrabarty, A.M.3
-
25
-
-
67650746694
-
-
Cold Spring Harbor Laboratory Press Cold Spring Harbor
-
Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 352-355
-
(1972)
, pp. 352-355
-
-
Miller, J.H.1
-
26
-
-
0344406163
-
Crystal Structure of a full-length LysR-type transcriptional regulator, CbnR: Unusual combination of two subunit forms and molecular bases for causing and changing DNA bend
-
DOI 10.1016/S0022-2836(03)00312-7
-
S Muraoka R Okumura N Ogawa T Nonaka K Miyashita T Senda 2003 Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend J Mol Biol 328 555 566 (Pubitemid 36438573)
-
(2003)
Journal of Molecular Biology
, vol.328
, Issue.3
, pp. 555-566
-
-
Muraoka, S.1
Okumura, R.2
Ogawa, N.3
Nonaka, T.4
Miyashita, K.5
Senda, T.6
-
27
-
-
0036933705
-
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
-
DOI 10.1046/j.1462-2920.2002.00366.x
-
KE Nelson C Weinel IT Paulsen RJ Dodson H Hilbert VAP Martins dos Santos DE Fouts SR Gill M Pop M Holmes L Brinkac M Beanan RT DeBoy S Daugherty J Kolonay R Madupu W Nelson O White J Peterson H Khouri I Hance P Chris Lee E Holtzapple D Scanlan K Tran A Moazzez T Utterback M Rizzo K Lee D Kosack D Moestl H Wedler J Lauber D Stjepandic J Hoheisel M Straetz S Heim C Kiewitz J Eisen KN Timmis A Düsterhöft B Tümmler CM Fraser 2002 Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 Environ Microbiol 4 799 808 (Pubitemid 36064171)
-
(2002)
Environmental Microbiology
, vol.4
, Issue.12
, pp. 799-808
-
-
Nelson, K.E.1
Weinel, C.2
Paulsen, I.T.3
Dodson, R.J.4
Hilbert, H.5
Martins Dos Santos, V.A.6
Fouts, D.E.7
Gill, S.R.8
Pop, M.9
Holmes, M.10
Brinkac, L.11
Beanan, M.12
DeBoy, R.T.13
Daugherty, S.14
Kolonay, J.15
Madupu, R.16
Nelson, W.17
White, O.18
Peterson, J.19
Khouri, H.20
Hance, I.21
Chris Lee, P.22
Holtzapple, E.23
Scanlan, D.24
Tran, K.25
Moazzez, A.26
Utterback, T.27
Rizzo, M.28
Lee, K.29
Kosack, D.30
Moestl, D.31
Wedler, H.32
Lauber, J.33
Stjepandic, D.34
Hoheisel, J.35
Straetz, M.36
Heim, S.37
Kiewitz, C.38
Eisen, J.39
Timmis, K.N.40
Dusterhoft, A.41
Tummler, B.42
Fraser, C.M.43
more..
-
30
-
-
0345310070
-
Engineering of quasi-natural Pseudomonas putida strains toluene metabolism through an ortho-cleavage degradation pathway
-
S Panke JM Sánchez-Romero V de Lorenzo 1998 Engineering of quasi-natural Pseudomonas putida strains for toluene metabolism through an ortho-cleavage degradation pathway Appl Environ Microbiol 64 748 751 (Pubitemid 28079850)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.2
, pp. 748-751
-
-
Panke, S.1
Sanchez-Romero, J.M.2
De Lorenzo, V.3
-
32
-
-
0025158998
-
Signal-regulator interactions. Genetic analysis of the effector binding site of xylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon
-
JL Ramos C Michan F Rojo D Dwyer K Timmis 1990 Signal-regulator interactions. Genetic analysis of the effector binding site of xylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon J Mol Biol 211 373 382
-
(1990)
J Mol Biol
, vol.211
, pp. 373-382
-
-
Ramos, J.L.1
Michan, C.2
Rojo, F.3
Dwyer, D.4
Timmis, K.5
-
33
-
-
0031756487
-
Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly
-
DOI 10.1146/annurev.micro.52.1.287
-
W Reineke 1998 Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly Annu Rev Microbiol 52 287 331 (Pubitemid 28481194)
-
(1998)
Annual Review of Microbiology
, vol.52
, pp. 287-331
-
-
Reineke, W.1
-
34
-
-
67650715726
-
-
2 Cold Spring Harbor Laboratory Press Cold Spring Harbor
-
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
-
(1989)
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
35
-
-
0027446708
-
Molecular biology of the LysR family of transcriptional regulators
-
MA Schell 1993 Molecular biology of the LysR family of transcriptional regulators Annu Rev Microbiol 47 597 626
-
(1993)
Annu Rev Microbiol
, vol.47
, pp. 597-626
-
-
Schell, M.A.1
-
36
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
DOI 10.1093/nar/gkg520
-
T Schwede J Kopp N Guex MC Peitsch 2003 SWISS-MODEL: an automated protein homology-modeling server Nucleic Acids Res 31 3381 3385 (Pubitemid 37442164)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
37
-
-
2942741120
-
Development of a bacterial biosensor for nitrotoluenes: The crystal structure of the transcriptional regulator DntR
-
DOI 10.1016/j.jmb.2004.04.071, PII S0022283604005522
-
IA Smirnova C Dian GA Leonard S McSweeney D Birse P Brzezinski 2004 Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator DntR J Mol Biol 340 405 418 (Pubitemid 38797989)
-
(2004)
Journal of Molecular Biology
, vol.340
, Issue.3
, pp. 405-418
-
-
Smirnova, I.A.1
Dian, C.2
Leonard, G.A.3
McSweeney, S.4
Birse, D.5
Brzezinski, P.6
-
38
-
-
4544275675
-
Bacterial transcriptional regulators for degradation pathways of aromatic compounds
-
DOI 10.1128/MMBR.68.3.474-500.2004
-
D Tropel JR van der Meer 2004 Bacterial transcriptional regulators for degradation pathways of aromatic compounds Microbiol Mol Biol Rev 68 474 500 (Pubitemid 39238279)
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, Issue.3
, pp. 474-500
-
-
Tropel, D.1
Van Der Meer, J.R.2
-
39
-
-
0031571642
-
The structure of the cofactor-binding fragment of the LysR family member, CysB: A familiar fold with a surprising subunit arrangement
-
R Tyrrell KHG Verschueren EJ Dodson GN Murshudov C Addy AJ Wilkinson 1997 The structure of the cofactor-binding fragment of the LysR family member, CysB: a familiar fold with a surprising subunit arrangement Structure 5 1017 1032 (Pubitemid 27393087)
-
(1997)
Structure
, vol.5
, Issue.8
, pp. 1017-1032
-
-
Tyrrell, R.1
Verschueren, K.H.G.2
Dodson, E.J.3
Murshudov, G.N.4
Addy, C.5
Wilkinson, A.J.6
-
40
-
-
0025740524
-
Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region
-
JR van der Meer ACJ Frijters JHJ Leveau RIL Eggen AJB Zehnder WM de Vos 1991 Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region J Bacteriol 173 3700 3708
-
(1991)
J Bacteriol
, vol.173
, pp. 3700-3708
-
-
Van Der Meer, J.R.1
Frijters, A.C.J.2
Leveau, J.H.J.3
Eggen, R.I.L.4
Zehnder, A.J.B.5
De Vos, W.M.6
|