메뉴 건너뛰기




Volumn 3, Issue , 2009, Pages

Stochastic simulation and analysis of biomolecular reaction networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER PROGRAM; COMPUTER SIMULATION; GENETIC TRANSCRIPTION; METABOLISM; PROBABILITY; PROTEIN SYNTHESIS; STATISTICS; TIME;

EID: 67650709081     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-3-64     Document Type: Article
Times cited : (16)

References (22)
  • 1
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • 10.1126/science.1070919 12183631
    • Elowitz MB Levine AJ Siggia ED Swain PS Stochastic gene expression in a single cell Science 2002, 297;1183-1186. 10.1126/science.1070919 12183631
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 2
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expressions: From theories to phenotypes
    • 10.1038/nrg1615
    • Kaern M Elston TC Blake WJ Collins JJ Stochasticity in gene expressions: From theories to phenotypes Nat Rev Genetics 2005, 6:451-464. 10.1038/ nrg1615
    • (2005) Nat Rev Genetics , vol.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 4
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • 10.1021/j100540a008
    • Gillespie D Exact stochastic simulation of coupled chemical reactions J Phys Chem 1977, 81:2340-2361. 10.1021/j100540a008
    • (1977) J Phys Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.1
  • 6
    • 6344283046 scopus 로고    scopus 로고
    • Expression of a cascading genetic network within liposomes
    • 10.1016/j.febslet.2004.09.046 15498568
    • Ishikawa K Sato K Shima Y Urabe I Yomo T Expression of a cascading genetic network within liposomes FEBS Letters 2004, 576:387-390. 10.1016/ j.febslet.2004.09.046 15498568
    • (2004) FEBS Letters , vol.576 , pp. 387-390
    • Ishikawa, K.1    Sato, K.2    Shima, Y.3    Urabe, I.4    Yomo, T.5
  • 7
    • 11144220854 scopus 로고    scopus 로고
    • A vesicle bioreactor as a step toward an artificial cell assembly
    • 10.1073/pnas.0408236101
    • Noireaux V Libchaber A A vesicle bioreactor as a step toward an artificial cell assembly Proc National Acad Sci USA 2004, 101:17669-17674. 10.1073/pnas.0408236101
    • (2004) Proc National Acad Sci USA , vol.101 , pp. 17669-17674
    • Noireaux, V.1    Libchaber, A.2
  • 8
    • 26944433403 scopus 로고    scopus 로고
    • Toward an artificial cell based on gene expression in vesicles
    • 10.1088/1478-3975/2/3/P01
    • Noireaux V Bar-Ziv R Godefroy J Salman H Libchaber A Toward an artificial cell based on gene expression in vesicles Phys Bio 2005, 2:1-8. 10.1088/1478-3975/2/3/P01
    • (2005) Phys Bio , vol.2 , pp. 1-8
    • Noireaux, V.1    Bar-Ziv, R.2    Godefroy, J.3    Salman, H.4    Libchaber, A.5
  • 9
    • 0029379613 scopus 로고
    • Polymerase chain reaction in liposomes
    • 10.1016/1074-5521(95)90031-4
    • Oberholzer T Albrizio M Luisi PL Polymerase chain reaction in liposomes Chem Bio 1995, 2:677-682. 10.1016/1074-5521(95)90031-4
    • (1995) Chem Bio , vol.2 , pp. 677-682
    • Oberholzer, T.1    Albrizio, M.2    Luisi, P.L.3
  • 10
    • 0036498949 scopus 로고    scopus 로고
    • Artificial cells: Prospects for biotechnology
    • 10.1016/S0167-7799(02)01909-1
    • Pohorille A Deamer D Artificial cells: Prospects for biotechnology TRENDS in Biotech 2002, 20:123-128. 10.1016/S0167-7799(02)01909-1
    • (2002) TRENDS in Biotech , vol.20 , pp. 123-128
    • Pohorille, A.1    Deamer, D.2
  • 12
    • 0035933994 scopus 로고    scopus 로고
    • Approximate accelerated stochastic simulations of chemically reacting systems
    • 10.1063/1.1378322
    • Gillespie D Approximate accelerated stochastic simulations of chemically reacting systems J Chem Phys 2001, 115:1716. 10.1063/1.1378322
    • (2001) J Chem Phys , vol.115 , pp. 1716
    • Gillespie, D.1
  • 13
    • 0030921160 scopus 로고    scopus 로고
    • Biochemistry by numbers: Simulation of biochemical pathways with Gepasi 3
    • 10.1016/S0968-0004(97)01103-1 9301339
    • Mendez P Biochemistry by numbers: Simulation of biochemical pathways with Gepasi 3 Trends Biochem Sci 1997, 22:361-363. 10.1016/ S0968-0004(97)01103-1 9301339
    • (1997) Trends Biochem Sci , vol.22 , pp. 361-363
    • Mendez, P.1
  • 15
    • 0345269975 scopus 로고    scopus 로고
    • Genetic network analyzer: Quantitative simulation of genetic regulatory networks
    • 10.1093/bioinformatics/btf851
    • de Jong H Geiselmann J Hernandez C Page M Genetic network analyzer: Quantitative simulation of genetic regulatory networks Bioinfor 2003, 19:336-344. 10.1093/bioinformatics/btf851
    • (2003) Bioinfor , vol.19 , pp. 336-344
    • de Jong, H.1    Geiselmann, J.2    Hernandez, C.3    Page, M.4
  • 16
    • 2942514591 scopus 로고    scopus 로고
    • Biochemical Network Stochastic Simulator (BioNetS): Software for stochastic modeling of biochemical networks
    • 10.1186/1471-2105-5-24
    • Adalsteinsson D McMillen D Elston TC Biochemical Network Stochastic Simulator (BioNetS): Software for stochastic modeling of biochemical networks BMC Bioinform 2004, 5:24. 10.1186/1471-2105-5-24
    • (2004) BMC Bioinform , vol.5 , pp. 24
    • Adalsteinsson, D.1    McMillen, D.2    Elston, T.C.3
  • 17
    • 3042595010 scopus 로고    scopus 로고
    • Cellware - A multi-algorithmic software for computational systems biology
    • 10.1093/bioinformatics/bth067
    • Dhar P Meng TC Somani S Ye L Sairam S et al Cellware - a multi-algorithmic software for computational systems biology Bioinform 2004, 20:1319-1321. 10.1093/bioinformatics/bth067
    • (2004) Bioinform , vol.20 , pp. 1319-1321
    • Dhar, P.1    Meng, T.C.2    Somani, S.3    Ye, L.4    Sairam, S.5
  • 18
    • 17644396339 scopus 로고    scopus 로고
    • Dizzy: Stochastic simulation of large-scale genetic regulatory networks
    • 10.1142/S0219720005001132 15852513
    • Ramsey S Orrell D Bolouri H Dizzy: Stochastic simulation of large-scale genetic regulatory networks J Bioinform Comput Biol 2005, 3:415-436. 10.1142/S0219720005001132 15852513
    • (2005) J Bioinform Comput Biol , vol.3 , pp. 415-436
    • Ramsey, S.1    Orrell, D.2    Bolouri, H.3
  • 19
    • 1542400036 scopus 로고    scopus 로고
    • A multi-algorithm, multi-scale method for cell simulation
    • 10.1093/bioinformatics/btg442
    • Takahashi K Kaizu K Hu B Tomita M A multi-algorithm, multi-scale method for cell simulation Bioinform 2004, 20:538-546. 10.1093/bioinformatics/ btg442
    • (2004) Bioinform , vol.20 , pp. 538-546
    • Takahashi, K.1    Kaizu, K.2    Hu, B.3    Tomita, M.4
  • 20
    • 67650769717 scopus 로고    scopus 로고
    • Biomolecular Network Simulator: Software for Stochastic Simulation of Cellular Biological Processes
    • Chushak Y Foy B Frazier J Biomolecular Network Simulator: Software for Stochastic Simulation of Cellular Biological Processes Proceeding of the Spring Simulation Multiconference 2007, 1:345-349.
    • (2007) Proceeding of the Spring Simulation Multiconference , vol.1 , pp. 345-349
    • Chushak, Y.1    Foy, B.2    Frazier, J.3
  • 22
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
    • 10.1093/bioinformatics/btg015
    • Hucka M Finney A Sauro HM Bolouri H et al The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models Bioinfor 2003, 19:524-531. 10.1093/bioinformatics/btg015
    • (2003) Bioinfor , vol.19 , pp. 524-531
    • Hucka, M.1    Finney, A.2    Sauro, H.M.3    Bolouri, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.