The repertoire of G-protein-coupled receptors in Xenopus tropicalis

BMC Genomics

Volumn 10, Issue , 2009, Pages

  Ji, Yanping ^a   Zhang, Zhen ^a   Hu, Yinghe ^a  

^a EAST CHINA NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ADHESION RECEPTOR; FRIZZLED PROTEIN; G PROTEIN COUPLED RECEPTOR; GLUTAMATE RECEPTOR; PHEROMONE; RHODOPSIN RECEPTOR; SECRETIN; TASTE 2 RECEPTOR; UNCLASSIFIED DRUG; VOMERONASAL 1 RECEPTOR; XENOPUS PROTEIN;

ARTICLE; CONTROLLED STUDY; GENOME; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; OLFACTORY SYSTEM; VOMERONASAL ORGAN; XENOPUS; XENOPUS TROPICALIS; ANIMAL; DNA SEQUENCE; GENETICS; PHYLOGENY;

ANIMALIA; MAMMALIA; TELEOSTEI; VERTEBRATA; XENOPUS TROPICALIS;

ANIMALS; EVOLUTION, MOLECULAR; GENOME; PHYLOGENY; RECEPTORS, G-PROTEIN-COUPLED; SEQUENCE ANALYSIS, DNA; XENOPUS; XENOPUS PROTEINS;

EID: 67650650957     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-263     Document Type: Article

References (51)

1. Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W et al Initial sequencing and analysis of the human genome Nature 2001, 409:6822-860. 921 11237011
2. Venter JC Adams MD Myers EW Li PW Mural RJ Sutton GG Smith HO Yandell M Evans CA Holt RA et al The sequence of the human genome Science (New York, NY) 2001, 291:5507-1304. 1351
3. Schoneberg T Schulz A Biebermann H Hermsdorf T Rompler H Sangkuhl K Mutant G-protein-coupled receptors as a cause of human diseases Pharmacology & therapeutics 2004, 104(3):173-206. 15556674
4. Kobilka BK G protein coupled receptor structure and activation Biochimica et biophysica acta 2007, 1768(4):794-807. 1876727 17188232
5. Burggren WW Warburton S Amphibians as animal models for laboratory research in physiology ILAR journal/National Research Council, Institute of Laboratory Animal Resources 2007, 48(3):260-269. 17592189
6. Metpally RP Sowdhamini R Genome wide survey of G protein-coupled receptors in Tetraodon nigroviridis BMC evolutionary biology 2005 5 41 1187884 16022726
7. Gloriam DE Fredriksson R Schioth HB The G protein-coupled receptor subset of the rat genome BMC genomics 2007, 8:338. 2117022 17892602
8. Fredriksson R Lagerstrom MC Lundin LG Schioth HB The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints Molecular pharmacology 2003, 63(6):1256-1272. 12761335
9. Xenopus tropicalis v4.1 http://genome.jgi-psf.org/Xentr4/Xentr4.home.html
10. Li W Jaroszewski L Godzik A Clustering of highly homologous sequences to reduce the size of large protein databases Bioinformatics (Oxford, England) 2001, 17(3):282-283. 11294794
11. Lagerstrom MC Hellstrom AR Gloriam DE Larsson TP Schioth HB Fredriksson R The G protein-coupled receptor subset of the chicken genome PLoS computational biology 2006, 2(6):e54. 1472694 16741557
12. Nordstrom KJ Fredriksson R Schioth HB The amphioxus (Branchiostoma floridae) genome contains a highly diversified set of G protein-coupled receptors BMC evolutionary biology 2008, 8:9. 2246102 18199322
13. Kamesh N Aradhyam GK Manoj N The repertoire of G protein-coupled receptors in the sea squirt Ciona intestinalis BMC evolutionary biology 2008, 8:129. 2396169 18452600
14. Bjarnadottir TK Fredriksson R Hoglund PJ Gloriam DE Lagerstrom MC Schioth HB The human and mouse repertoire of the adhesion family of G-protein-coupled receptors Genomics 2004, 84(1):23-33. 15203201
15. Strutt D Frizzled signalling and cell polarisation in Drosophila and vertebrates Development (Cambridge, England) 2003, 130(19):4501-4513. 12925579
16. Montmayeur JP Matsunami H Receptors for bitter and sweet taste Current opinion in neurobiology 2002, 12(4):366-371. 12139982
17. Ambrosini A Bresciani L Fracchia S Brunello N Racagni G Metabotropic glutamate receptors negatively coupled to adenylate cyclase inhibit N-methyl-D-aspartate receptor activity and prevent neurotoxicity in mesencephalic neurons in vitro Molecular pharmacology 1995, 47(5):1057-1064. 7746273
18. Dulac C Torello AT Molecular detection of pheromone signals in mammals: from genes to behaviour Nature reviews 2003, 4(7):551-562. 12838330
19. Yang H Shi P Zhang YP Zhang J Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats Genomics 2005, 86(3):306-315. 16024217
20. Bjarnadottir TK Fredriksson R Schioth HB The gene repertoire and the common evolutionary history of glutamate, pheromone (V2R), taste(1) and other related G protein-coupled receptors Gene 2005, 362:70-84. 16229975
21. Hashiguchi Y Nishida M Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes BMC evolutionary biology 2006, 6:76. 1601972 17014738
22. Fischer A Gilad Y Man O Paabo S Evolution of bitter taste receptors in humans and apes Molecular biology and evolution 2005, 22(3):432-436.
23. Go Y Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates Molecular biology and evolution 2006, 23(5):964-972.
24. Pfister P Rodriguez I Olfactory expression of a single and highly variable V1r pheromone receptor-like gene in fish species Proceedings of the National Academy of Sciences of the United States of America 2005, 102(15):5489-5494. 556222 15809442
25. Grus WE Shi P Zhang YP Zhang J Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals Proceedings of the National Academy of Sciences of the United States of America 2005, 102(16):5767-5772. 556306 15790682
26. Horn F Bettler E Oliveira L Campagne F Cohen FE Vriend G GPCRDB information system for G protein-coupled receptors Nucleic acids research 2003, 31(1):294-297. 165550 12520006
27. Grus WE Zhang J Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats Gene 2004, 340(2):303-312. 15475172
28. Niimura Y Nei M Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods Proceedings of the National Academy of Sciences of the United States of America 2005, 102(17):6039-6044. 1087945 15824306
29. Glusman G Bahar A Sharon D Pilpel Y White J Lancet D The olfactory receptor gene superfamily: Data mining, classification, and nomenclature Mamm Genome 2000, 11(11):1016-1023. 11063259
30. Freitag J Krieger J Strotmann J Breer H Two classes of olfactory receptors in Xenopus laevis Neuron 1995, 15(6):1383-1392. 8845161
31. Breer H Olfactory receptors: Molecular basis for recognition and discrimination of odors Analytical and bioanalytical chemistry 2003, 377(3):427-433.
32. Metzger R Bader M Ludwig T Berberich C Bunnemann B Ganten D Expression of the mouse and rat mas proto-oncogene in the brain and peripheral tissues FEBS letters 1995, 357(1):27-32. 8001672
33. Alenina N Bader M Walther T Imprinting of the murine MAS protooncogene is restricted to its antisense RNA Biochemical and biophysical research communications 2002, 290(3):1072-1078.
34. Ferreira AJ Santos RA et al Cardiovascular actions of angiotensin-(1-7) Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas/Sociedade Brasileira de Biofisica [et al] 2005, 38(4):499-507. 15962175
35. Dong X Han S Zylka MJ Simon MI Anderson DJ A diverse family of GPCRs expressed in specific subsets of nociceptive sensory neurons Cell 2001, 106(5):619-632. 11551509
36. Fredriksson R Schioth HB The repertoire of G-protein-coupled receptors in fully sequenced genomes Molecular pharmacology 2005, 67(5):1414-1425. 15687224
37. Logan DW Bryson-Richardson RJ Pagan KE Taylor MS Currie PD Jackson IJ The structure and evolution of the melanocortin and MCH receptors in fish and mammals Genomics 2003, 81(2):184-191. 12620396
38. Saito Y Nagasaki H The melanin-concentrating hormone system and its physiological functions Results and problems in cell differentiation 2008, 46:159-179.
39. Rouquier S Giorgi D Olfactory receptor gene repertoires in mammals Mutation research 2007 616 1-2 95 102 17166524
40. Doving KB Trotier D Structure and function of the vomeronasal organ The Journal of experimental biology 1998, 201(Pt 21):2913-2925. 9866877
41. Rodriguez I Pheromone receptors in mammals Hormones and behavior 2004, 46(3):219-230.
42. Meyer A Schartl M Gene and genome duplications in vertebrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions Current opinion in cell biology 1999, 11(6):699-704. 10600714
43. Niimura Y Nei M Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates Journal of human genetics 2006, 51(6):505-517. 1850483 16607462
44. Tusnady GE Simon I The HMMTOP transmembrane topology prediction server Bioinformatics (Oxford, England) 2001, 17(9):849-850. 11590105
45. Krogh A Larsson B von Heijne G Sonnhammer EL Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes Journal of molecular biology 2001 305(3):567-580. 11152613
46. Hirokawa T Boon-Chieng S Mitaku S SOSUI: Classification and secondary structure prediction system for membrane proteins Bioinformatics (Oxford, England) 1998, 14(4):378-379. 9632836
47. Marchler-Bauer A Anderson JB Cherukuri PF DeWeese-Scott C Geer LY Gwadz M He S Hurwitz DI Jackson JD Ke Z et al CDD: A Conserved Domain Database for protein classification Nucleic acids research 2005, 33(Database):D192-196. 540023 15608175
48. Finn RD Tate J Mistry J Coggill PC Sammut SJ Hotz HR Ceric G Forslund K Eddy SR Sonnhammer EL et al The Pfam protein families database Nucleic acids research 2008, 36(Database):D281-288. 2238907 18039703
49. Thompson JD Gibson TJ Plewniak F Jeanmougin F Higgins DG The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic acids research 1997, 25(24):4876-4882. 147148 9396791
50. Tamura K Dudley J Nei M Kumar S MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Molecular biology and evolution 2007, 24(8):1596-1599.
51. Bowes JB Snyder KA Segerdell E Gibb R Jarabek C Noumen E Pollet N Vize PD Xenbase: A Xenopus biology and genomics resource Nucleic acids research 2008, 36(Database):D761-767. 2238855 17984085