-
1
-
-
0035775725
-
-
Ideker, T.; Galitski, T.; Hood, L. Ann. Rev. Genomics Hum. Genet. 2001, 2, 343-372.
-
(2001)
Ann. Rev. Genomics Hum. Genet
, vol.2
, pp. 343-372
-
-
Ideker, T.1
Galitski, T.2
Hood, L.3
-
2
-
-
0003880161
-
-
4th ed, Garland: New York, NY
-
Alberts, B.; Johnson, A.; Lewis, J.; Raff, M.; Roberts, K.; Walter, P. In Molecular Biology of the Cell, 4th ed.; Garland: New York, NY, 2002; pp 513-524.
-
(2002)
Molecular Biology of the Cell
, pp. 513-524
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
3
-
-
34547131554
-
-
Gingras, A. C.; Gstaiger, M.; Raught, B.; Aebersold, R. Nat. Rev. Mol.Cell Biol. 2007, 8, 645-654.
-
(2007)
Nat. Rev. Mol.Cell Biol
, vol.8
, pp. 645-654
-
-
Gingras, A.C.1
Gstaiger, M.2
Raught, B.3
Aebersold, R.4
-
4
-
-
34548418142
-
-
Berggard, T.; Linse, S.; James, P. Proteomics 2007, 7, 2833-2842.
-
(2007)
Proteomics
, vol.7
, pp. 2833-2842
-
-
Berggard, T.1
Linse, S.2
James, P.3
-
5
-
-
34948893454
-
-
Sharp, J. L.; Anderson, K. K.; Hurst, G. B.; Daly, D. S.; Pelletier, D. A.; Cannon, W. R.; Auberry, D. L.; Schmoyer, D. D.; McDonald, W. H.; White, A. M.; Hooker, B. S.; Victry, K. D.; Buchanan, M. V.; Kery, V.; Wiley, H. S. J. Proteome Res. 2007, 6, 3788-3795.
-
(2007)
J. Proteome Res
, vol.6
, pp. 3788-3795
-
-
Sharp, J.L.1
Anderson, K.K.2
Hurst, G.B.3
Daly, D.S.4
Pelletier, D.A.5
Cannon, W.R.6
Auberry, D.L.7
Schmoyer, D.D.8
McDonald, W.H.9
White, A.M.10
Hooker, B.S.11
Victry, K.D.12
Buchanan, M.V.13
Kery, V.14
Wiley, H.S.15
-
6
-
-
34548319678
-
-
Musso, G. A.; Zhang, Z. L.; Emili, A. Chem. Rev. 2007, 107, 3585-3600.
-
(2007)
Chem. Rev
, vol.107
, pp. 3585-3600
-
-
Musso, G.A.1
Zhang, Z.L.2
Emili, A.3
-
7
-
-
0032828715
-
-
Rigaut, G.; Shevchenko, A.; Rutz, B.; Wilm, M.; Mann, M.; Seraphin, B. Nat. Biotechnol. 1999, 17, 1030-1032.
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
8
-
-
4444281106
-
-
Zeghouf, M.; Li, J.; Butland, G.; Borkowska, A.; Canadien, V.; Richards, D.; Beattie, B.; Emili, A.; Greenblatt, J. F. J. Proteome Res. 2004, 3, 463-468.
-
(2004)
J. Proteome Res
, vol.3
, pp. 463-468
-
-
Zeghouf, M.1
Li, J.2
Butland, G.3
Borkowska, A.4
Canadien, V.5
Richards, D.6
Beattie, B.7
Emili, A.8
Greenblatt, J.F.9
-
9
-
-
53049103435
-
-
Pelletier, D. A.; Hurst, G. B.; Foote, L. J.; Lankford, P. K.; McKeown, C. K.; Lu, T. S.; Schmoyer, D. D.; Shah, M. B.; Hervey, W. J., IV; McDonald, W. H.; Hooker, B. S.; Cannon, W. R.; Daly, D. S.; Gilmore, J. M.; Wiley, H. S.; Auberry, D. L.; Wang, Y.; Larimer, F. W.; Kennel, S. J.; Doktycz, M. J.; Morrell-Falvey, J. L.; Owens, E. T.; Buchanan, M. V. J. Proteome Res. 2008, 7, 3319-3328.
-
(2008)
J. Proteome Res
, vol.7
, pp. 3319-3328
-
-
Pelletier, D.A.1
Hurst, G.B.2
Foote, L.J.3
Lankford, P.K.4
McKeown, C.K.5
Lu, T.S.6
Schmoyer, D.D.7
Shah, M.B.8
Hervey, W.J.I.9
McDonald, W.H.10
Hooker, B.S.11
Cannon, W.R.12
Daly, D.S.13
Gilmore, J.M.14
Wiley, H.S.15
Auberry, D.L.16
Wang, Y.17
Larimer, F.W.18
Kennel, S.J.19
Doktycz, M.J.20
Morrell-Falvey, J.L.21
Owens, E.T.22
Buchanan, M.V.23
more..
-
11
-
-
39749146978
-
-
Pflieger, D.; Junger, M. A.; Muller, M.; Rinner, O.; Lee, H.; Gehrig, P. M.; Gstaiger, M.; Aebersold, R. Mol. Cell. Proteomics 2008, 7, 326-346.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 326-346
-
-
Pflieger, D.1
Junger, M.A.2
Muller, M.3
Rinner, O.4
Lee, H.5
Gehrig, P.M.6
Gstaiger, M.7
Aebersold, R.8
-
12
-
-
26844556166
-
-
Tackett, A. J.; DeGrasse, J. A.; Sekedat, M. D.; Oeffinger, M.; Rout, M. P.; Chait, B. T. J. Proteome Res. 2005, 4, 1752-1756.
-
(2005)
J. Proteome Res
, vol.4
, pp. 1752-1756
-
-
Tackett, A.J.1
DeGrasse, J.A.2
Sekedat, M.D.3
Oeffinger, M.4
Rout, M.P.5
Chait, B.T.6
-
13
-
-
38949095410
-
-
Lee, D. J.; Busby, S. J. W.; Westblade, L. F.; Chait, B. T. J. Bacteriol. 2008, 190, 1284-1289.
-
(2008)
J. Bacteriol
, vol.190
, pp. 1284-1289
-
-
Lee, D.J.1
Busby, S.J.W.2
Westblade, L.F.3
Chait, B.T.4
-
14
-
-
0348103717
-
-
Larimer, F. W.; Chain, P.; Hauser, L.; Lamerdin, J.; Malfatti, S.; Do, L.; Land, M. L.; Pelletier, D. A.; Beatty, J. T.; Lang, A. S.; Tabita, F. R.; Gibson, J. L.; Hanson, T. E.; Bobst, C.; Torres, J.; Peres, C.; Harrison, F. H.; Gibson, J.; Harwood, C. S. Nat. Biotechnol. 2004, 22, 55-61.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 55-61
-
-
Larimer, F.W.1
Chain, P.2
Hauser, L.3
Lamerdin, J.4
Malfatti, S.5
Do, L.6
Land, M.L.7
Pelletier, D.A.8
Beatty, J.T.9
Lang, A.S.10
Tabita, F.R.11
Gibson, J.L.12
Hanson, T.E.13
Bobst, C.14
Torres, J.15
Peres, C.16
Harrison, F.H.17
Gibson, J.18
Harwood, C.S.19
-
15
-
-
13444283630
-
-
Butland, G.; Peregrin-Alvarez, J. M.; Li, J.; Yang, W. H.; Yang, X. C.; Canadien, V.; Starostine, A.; Richards, D.; Beattie, B.; Krogan, N.; Davey, M.; Parkinson, J.; Greenblatt, J.; Emili, A. Nature 2005, 433, 531-537.
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.H.4
Yang, X.C.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
Davey, M.11
Parkinson, J.12
Greenblatt, J.13
Emili, A.14
-
16
-
-
67650455410
-
-
National Laboratory. Unpublished work, to present
-
Khalsa-Moyers, G.; Foote, L. J.; Lu, T. Y.; Morrell-Falvey, J. L.; McDonald, W. H.; Hurst, G. B. Oak Ridge National Laboratory. Unpublished work, 2005 to present.
-
(2005)
Oak Ridge
-
-
Khalsa-Moyers, G.1
Foote, L.J.2
Lu, T.Y.3
Morrell-Falvey, J.L.4
McDonald, W.H.5
Hurst, G.B.6
-
18
-
-
33749062913
-
-
Pan, C. L.; Kora, G.; McDonald, W. H.; Tabb, D. L.; VerBerkmoes, N. C.; Hurst, G. B.; Pelletier, D. A.; Samatova, N. F.; Hettich, R. L. Anal. Chem. 2006, 78, 7121-7131.
-
(2006)
Anal. Chem
, vol.78
, pp. 7121-7131
-
-
Pan, C.L.1
Kora, G.2
McDonald, W.H.3
Tabb, D.L.4
VerBerkmoes, N.C.5
Hurst, G.B.6
Pelletier, D.A.7
Samatova, N.F.8
Hettich, R.L.9
-
19
-
-
67650421001
-
-
Sambrook, J.; Russell, D. W. In Molecular Cloning: A Laboratory Manual, 2nd ed.; Cold Spring Harbor: Plainview, NY, 1989, Appendix A.1: Bacterial Media, Antibiotics, and Bacterial Strains.
-
Sambrook, J.; Russell, D. W. In Molecular Cloning: A Laboratory Manual, 2nd ed.; Cold Spring Harbor: Plainview, NY, 1989, Appendix A.1: Bacterial Media, Antibiotics, and Bacterial Strains.
-
-
-
-
20
-
-
43849089302
-
-
Pan, C.; Oda, Y.; Lankford, P. K.; Zhang, B.; Samatova, N. F.; Pelletier, D. A.; Harwood, C. S.; Hettich, R. L. Mol. Cell. Proteomics 2008, 7, 938-948.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 938-948
-
-
Pan, C.1
Oda, Y.2
Lankford, P.K.3
Zhang, B.4
Samatova, N.F.5
Pelletier, D.A.6
Harwood, C.S.7
Hettich, R.L.8
-
21
-
-
34548150256
-
-
Hervey, W. J., IV; Strader, M. B.; Hurst, G. B. J. Proteome Res. 2007, 6, 3054-3061.
-
(2007)
J. Proteome Res
, vol.6
, pp. 3054-3061
-
-
Hervey, W.J.I.1
Strader, M.B.2
Hurst, G.B.3
-
22
-
-
67650425956
-
-
ThermoFinnigan Product Support Bulletin 105, September
-
ThermoFinnigan Product Support Bulletin 105. http://www.thermo. com/eThermo/CMA/PDFs/Articles/articlesFile-21286.pdf. Access date: September 2008.
-
(2008)
Access date
-
-
-
23
-
-
0036684101
-
-
McDonald, W. H.; Ohi, R.; Miyamoto, D. T.; Mitchison, T. J.; Yates, J. R., III. Int. J. Mass Spectrom. 2002, 219, 245-251.
-
(2002)
Int. J. Mass Spectrom
, vol.219
, pp. 245-251
-
-
McDonald, W.H.1
Ohi, R.2
Miyamoto, D.T.3
Mitchison, T.J.4
Yates III, J.R.5
-
24
-
-
0029644596
-
-
Yates, J. R., III.; Eng, J. K.; McCormack, A. L.; Schieltz, D. Anal. Chem. 1995, 67, 1426-1436.
-
(1995)
Anal. Chem
, vol.67
, pp. 1426-1436
-
-
Yates III, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
25
-
-
72249112438
-
-
HAMAP:, strain K12 complete proteome, Access date: January
-
HAMAP: Escherichia coli (strain K12) complete proteome. http://ca.expasy.org/sprot/hamap/ECOLI.html. Access date: January 2008.
-
(2008)
Escherichia coli
-
-
-
26
-
-
67650429119
-
-
CGA009 complete genome sequence and annotation, Access date: January
-
Rhodopseudomonas palustris CGA009 complete genome sequence and annotation. http://genome.ornl.gov/microbial/rpal/. Access date: January 2008.
-
(2008)
Rhodopseudomonas palustris
-
-
-
28
-
-
0036393898
-
-
Tabb, D. L.; McDonald, W. H.; Yates, J. R., III. J. Proteome Res. 2002, 1, 21-26.
-
(2002)
J. Proteome Res
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates III, J.R.3
-
30
-
-
0001796834
-
-
Losick, R, Chamberlin, M, Eds, Cold Spring Harbor Laboratory: Cold Spring Harbor, NY
-
Chamberlin, M. J. In RNA Polymerase; Losick, R.; Chamberlin, M., Eds.; Cold Spring Harbor Laboratory: Cold Spring Harbor, NY, 1976, pp 17-67.
-
(1976)
RNA Polymerase
, pp. 17-67
-
-
Chamberlin, M.J.1
-
31
-
-
67650425956
-
-
August
-
COGnitor. http://www.ncbi.nlm.nih.gov/COG/old/xognitor.html. Access date: August 2008.
-
(2008)
Access date
-
-
COGnitor1
-
32
-
-
67650425960
-
-
Kyoto Encyclopedia of Genes and Genomes. ftp://ftp.genome.jp/pub/kegg/ pathway/organisms/. Access date: September 2008.
-
Kyoto Encyclopedia of Genes and Genomes. ftp://ftp.genome.jp/pub/kegg/ pathway/organisms/. Access date: September 2008.
-
-
-
-
33
-
-
67650464747
-
-
Virtual Institute for Microbial Stress and Survival Operon Prediction. http://www.microbesonline.org/operons/OperonList.html. Access date: September 2008.
-
Virtual Institute for Microbial Stress and Survival Operon Prediction. http://www.microbesonline.org/operons/OperonList.html. Access date: September 2008.
-
-
-
-
34
-
-
33748319353
-
-
Zybailov, B.; Mosley, A. L.; Sardiu, M. E.; Coleman, M. K.; Florens, L.; Washburn, M. P. J. Proteome Res. 2006, 5, 2339-2347.
-
(2006)
J. Proteome Res
, vol.5
, pp. 2339-2347
-
-
Zybailov, B.1
Mosley, A.L.2
Sardiu, M.E.3
Coleman, M.K.4
Florens, L.5
Washburn, M.P.6
-
35
-
-
0037466115
-
-
Ghosh, P.; Ramakrishnan, C.; Chatterji, D. Biophys. Chem. 2003, 103, 223-237.
-
(2003)
Biophys. Chem
, vol.103
, pp. 223-237
-
-
Ghosh, P.1
Ramakrishnan, C.2
Chatterji, D.3
-
36
-
-
33749046638
-
-
Pan, C.; Kora, G.; Tabb, D. L.; Pelletier, D. A.; McDonald, W. H.; Hurst, G. B.; Hettich, R. L.; Samatova, N. F. Anal. Chem. 2006, 78, 7110-7120.
-
(2006)
Anal. Chem
, vol.78
, pp. 7110-7120
-
-
Pan, C.1
Kora, G.2
Tabb, D.L.3
Pelletier, D.A.4
McDonald, W.H.5
Hurst, G.B.6
Hettich, R.L.7
Samatova, N.F.8
-
37
-
-
38549126643
-
-
Kanehisa, M.; Araki, M.; Goto, S.; Hattori, M.; Hirakawa, M.; Itoh, M.; Katayama, T.; Kawashima, S.; Okuda, S.; Tokimatsu, T.; Yamanishi, Y. Nucleic Acids Res. 2008, 36, D480-D484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
38
-
-
33644874819
-
-
Kanehisa, M.; Goto, S.; Hattori, M.; Aoki-Kinoshita, K. F.; Itoh, M.; Kawashima, S.; Katayama, T.; Araki, M.; Hirakawa, M. Nucleic Acids Res. 2006, 34, D354-357.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
40
-
-
13944268797
-
-
Price, M. N.; Huang, K. H.; Alm, E. J.; Arkin, A. P. Nucleic Acids Res. 2005, 33, 880-892.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 880-892
-
-
Price, M.N.1
Huang, K.H.2
Alm, E.J.3
Arkin, A.P.4
-
41
-
-
67650409190
-
-
KEGG Map of branched-chain amino acid biosynthesis: http://www.genome.ad. jp/kegg/pathway/map/map00290.html. Access date: August 2008.
-
KEGG Map of branched-chain amino acid biosynthesis: http://www.genome.ad. jp/kegg/pathway/map/map00290.html. Access date: August 2008.
-
-
-
-
43
-
-
32344441400
-
-
VerBerkmoes, N. C.; Shah, M. B.; Lankford, P. K.; Pelletier, D. A.; Strader, M. B.; Tabb, D. L.; McDonald, W. H.; Barton, J. W.; Hurst, G. B.; Hauser, L.; Davison, B. H.; Beatty, J. T.; Harwood, C. S.; Tabita, F. R.; Hettich, R. L.; Larimer, F. W. J. Proteome Res. 2006, 5, 287-298.
-
(2006)
J. Proteome Res
, vol.5
, pp. 287-298
-
-
VerBerkmoes, N.C.1
Shah, M.B.2
Lankford, P.K.3
Pelletier, D.A.4
Strader, M.B.5
Tabb, D.L.6
McDonald, W.H.7
Barton, J.W.8
Hurst, G.B.9
Hauser, L.10
Davison, B.H.11
Beatty, J.T.12
Harwood, C.S.13
Tabita, F.R.14
Hettich, R.L.15
Larimer, F.W.16
-
44
-
-
67650417366
-
-
KEGG Enzyme 4.4.1.8. http://www.genome.ad.jp/dbget-bin/www-bget?enzyme+4. 4.1.8. Access date: August 2008.
-
KEGG Enzyme 4.4.1.8. http://www.genome.ad.jp/dbget-bin/www-bget?enzyme+4. 4.1.8. Access date: August 2008.
-
-
-
-
45
-
-
67650437827
-
-
KEGG Enzyme 2.5.1.49. http://www.genome.ad.jp/dbget-bin/www-bget? enzyme+2.5.1.49. Access date: August 2008.
-
KEGG Enzyme 2.5.1.49. http://www.genome.ad.jp/dbget-bin/www-bget? enzyme+2.5.1.49. Access date: August 2008.
-
-
-
|