Simulation of the impact of retroviruses on genome organization of an artificial organism

2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2009 - Proceedings

Volumn , Issue , 2009, Pages 140-147

  Ashlock, Daniel ^a   Ashlock, Wendy ^b  

^a UNIVERSITY OF GUELPH   (Canada)

^b YORK UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL ORGANISMS; GENOME ORGANIZATION; GENOME STRUCTURES; HOST CELLS; RNA VIRUS; SELF-ORGANIZED; SIMULATION ENVIRONMENT;

ARTIFICIAL INTELLIGENCE; BIOLOGY; CELL MEMBRANES; HEALTH; NUCLEIC ACIDS; ONCOGENIC VIRUSES; RNA;

BIOINFORMATICS;

EID: 67650363738     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CIBCB.2009.4925720     Document Type: Conference Paper

References (18)

1. D. Ashlock, K. M. Bryden, W. Ashlock, and Stephen P. Gent. Rapid training of thermal agents with single parent genetic programming. In Proceedings of the 2005 Congress on Evolutionary Computation, volume 3, pages 2122-2129, 2005. (Pubitemid 41496112)
2. Daniel Ashlock. Evolutionary Computation for Opimization and Modeling. Springer, New York, 2006.
3. W. Ashlock and D. Ashlock. Single parent genetic programming. In Proceedings of the 2005 Congress on Evolutionary Computation, volume 2, pages 1172-1179, 2005. (Pubitemid 41495984)
4. Wolfgang Banzhaf, Peter Nordin, Robert E. Keller, and Frank D. Francone. Genetic Programming : An Introduction. Morgan Kaufmann, San Francisco, 1998.
5. Kenneth Edge, Gary Lamont, and Richard Raines. A retrovirus inspired algorithm for virus detection and optimization. In Genetic and Evolutionary Computation Conference (GECCO), pages 103-110, 2006. (Pubitemid 44611303)
6. Jeffrey A. Edlund and Christoph Adami. Evolution of robustness in digital organisms. Artifical Life, 10(2):167-179, 2004.
7. P. Hematti et. al. Distinct genomic integration of mlv and siv vectors in primate hematopoietic stem and progenitor cells. PLOS Biology, 2:2183-2190, 2004. (Pubitemid 40280522)
8. Charles R. Haag, Gary B. Lamont, Paul D. Williams, and Gilbert L. Peterson. An Artificial Immune System-Inspired Multiobjective Evolutionary Algorithm with Application to the Detection of Distributed Computer Network Intrusions, pages 420-435. Lecture Notes in Computer Science. Springer, Berlin/Heidelberg, 2007.
9. Aris Katzourakis, Andrew Rambaut, and Oliver G. Pybus. The evolutionary dynamics of endogenous retroviruses. Trends in Microbiology, 13:463-468, 2005. (Pubitemid 41317523)
10. John R. Koza. Genetic Programming. The MIT Press, Cambridge, MA, 1992.
11. John R. Koza. Genetic Programming II. The MIT Press, Cambridge, MA, 1994.
12. Philippe Lemey, Andrew Rambaut, and Oliver G. Pybus. Hiv evolutionary dynamics within and among hosts. AIDS Reviews, 8:125-140, 2006. (Pubitemid 44614030)
13. Bejamin Lewin Genes IV. Jones and Bartlett, Toronto, 2008.
14. Andrew Meade, David Corne, and Richard Sibly. Applying evolutionary computation to understanding the insertion behavior of line-1 retrotransposons in human dna. In Proceedings of the 2000 Congress on Evolutionary Computation, pages 836-843, 2000. (Pubitemid 30934729)
15. T. S. Ray. An approach to the synthesis of life. In C. G. Langton, C. Taylor, J. D. Farmer, and S. Rasmussen, editors, Artificial Life II, pages 371-408. Addison Wesley, Reading MA., 1992.
16. Wolfgang Seifarth, Oliver Frank, Udo Zeilfelder, Birgit Spiess, Alex Greenwood, Rudiger Hehlmann, and Christine Leib-Mosch. Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray. Journal of Virology, 79:341-352, 2005. (Pubitemid 39648388)
17. Howard B. Urnovitz and William H. Murphy. Human endogenous retroviruses: nature, occurrence, and clinical implications in human disease. Clinical Microbiology Reviews, 9:72-99, 1996. (Pubitemid 26035540)
18. Robin A. Weiss. The discovery of endogenous retroviruses. Retrovirology, 3:67, 2006. (Pubitemid 44605255)