메뉴 건너뛰기




Volumn 5121 LNBI, Issue , 2009, Pages 86-113

Stochastic calculus of looping sequences for the modelling and simulation of cellular pathways

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR PATHWAY; CIRCULAR SEQUENCES; MODELLING AND SIMULATIONS; PARALLEL COMPOSITION; PSEUDOMONAS AERUGINOSA; QUORUM-SENSING; REWRITE RULES; STOCHASTIC CALCULUS;

EID: 67650330232     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-88765-2-3     Document Type: Conference Paper
Times cited : (26)

References (34)
  • 1
    • 84944214361 scopus 로고    scopus 로고
    • Hybrid Modeling and Simulation of Biomolecular Networks
    • Hybrid Systems: Computation and Control
    • Alur, R., Belta, C., Ivancic, F., Kumar, V., Mintz, M., Pappas, G.J., Rubin, H., Schug, J.: Hybrid modeling and simulation of biomolecular networks. In: Di Benedetto, M.D., Sangiovanni-Vincentelli, A.L. (eds.) HSCC 2001. LNCS, vol.2034, pp. 19-32. Springer, Heidelberg (2001) (Pubitemid 33256406)
    • (2001) LECTURE NOTES IN COMPUTER SCIENCE , Issue.2034 , pp. 19-32
    • Alur, R.1    Belta, C.2    Ivancic, F.3    Kumar, V.4    Mintz, M.5    Pappas, G.J.6    Rubin, H.7    Schug, J.8
  • 2
    • 45749089368 scopus 로고    scopus 로고
    • The calculus of looping sequences
    • Bernardo, M., Degano, P., Zavattaro, G. (eds.). LNCS, Springer, Heidelberg
    • Barbuti, R., Caravagna, G., Maggiolo-Schettini, A., Milazzo, P., Pardini, G.: The Calculus of Looping Sequences. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol.5016, pp. 387-423. Springer, Heidelberg (2008)
    • (2008) SFM 2008 , vol.5016 , pp. 387-423
    • Barbuti, R.1    Caravagna, G.2    Maggiolo-Schettini, A.3    Milazzo, P.4    Pardini, G.5
  • 4
    • 33747069635 scopus 로고    scopus 로고
    • A calculus of looping sequences for modelling microbiological systems
    • SPECIAL ISSUE ON CONCURRENCY SPECIFICATION AND PROGRAMMING (CSandP 2005) Ruciane-Nide, Poland, 28-30 September 2005
    • Barbuti, R., Maggiolo-Schettini, A., Milazzo, P., Troina, A.: A calculus of looping sequences for modelling microbiological systems. Fund. Inform. 72, 21-35 (2006) (Pubitemid 44215251)
    • (2006) Fundamenta Informaticae , vol.72 , Issue.1-3 SPEC. ISS. , pp. 21-35
    • Barbuti, R.1    Maggiolo-Schettini, A.2    Milazzo, P.3    Troina, A.4
  • 7
    • 26444592298 scopus 로고    scopus 로고
    • Brane calculi. Interactions of biological membranes
    • Danos, V., Schachter, V. (eds.). LNCS (LNBI), Springer, Heidelberg
    • Cardelli, L.: Brane calculi. Interactions of biological membranes. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol.3082, pp. 257-280. Springer, Heidelberg (2005)
    • (2005) CMSB 2004 , vol.3082 , pp. 257-280
    • Cardelli, L.1
  • 9
    • 67650062229 scopus 로고    scopus 로고
    • Bio-PEPA: A framework for the modelling and analysis of biological systems
    • (to appear)
    • Ciocchetta, F., Hillston, J.: Bio-PEPA: a framework for the modelling and analysis of biological systems. Theor. Comput. Sci. (to appear, 2008)
    • (2008) Theor. Comput. Sci.
    • Ciocchetta, F.1    Hillston, J.2
  • 10
    • 4444324902 scopus 로고    scopus 로고
    • Modelling biochemical pathways through enhanced pi-calculus
    • Curti, M., Degano, P., Priami, C., Baldari, C.T.: Modelling Biochemical Pathways through Enhanced pi-calculus. Theor. Comput. Sci. 325, 111-140 (2004)
    • (2004) Theor. Comput. Sci. , vol.325 , pp. 111-140
    • Curti, M.1    Degano, P.2    Priami, C.3    Baldari, C.T.4
  • 11
    • 38149064616 scopus 로고    scopus 로고
    • Scalable modelling of biological pathways
    • Shao Z. (ed.). LNCS, Springer, Heidelberg
    • Danos, V., Feret, J., Fontana, W., Krivine, J.: Scalable modelling of biological pathways. In: Shao, Z. (ed.) APLAS 2007. LNCS, vol.4807, pp. 139-157. Springer, Heidelberg (2007)
    • (2007) APLAS 2007 , vol.4807 , pp. 139-157
    • Danos, V.1    Feret, J.2    Fontana, W.3    Krivine, J.4
  • 12
  • 13
    • 0034968039 scopus 로고    scopus 로고
    • A mathematical model for quorum sensing in Pseudomonas aeruginosa
    • DOI 10.1006/bulm.2000.0205
    • Dockery, J.D., Keener, J.P.: A mathematical model for quorum sensing in Pseudomonas aeruginosa. Bulletin of Mathematical Biology 63, 95-116 (2001) (Pubitemid 32577425)
    • (2001) Bulletin of Mathematical Biology , vol.63 , Issue.1 , pp. 95-116
    • Dockery, J.D.1    Keener, J.P.2
  • 14
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81, 2340-2361 (1977)
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.1
  • 16
    • 0034598952 scopus 로고    scopus 로고
    • Luminescence control in the marine bacterium Vibrio fischeri: An analysis of the dynamics of lux regulation
    • DOI 10.1006/jmbi.1999.3484
    • James, S., Nilsson, P., James, G., Kjelleberg, S., Fagerstroem, T.: Luminescence Control in the Marine Bacterium Vibrio fischeri: An Analysis of the Dynamics of lux Regulation. Journal of Molecular Biology 296, 1127-1137 (2000) (Pubitemid 30695586)
    • (2000) Journal of Molecular Biology , vol.296 , Issue.4 , pp. 1127-1137
    • James, S.1    Nilsson, P.2    James, G.3    Kjelleberg, S.4    Fagerstrom, T.5
  • 23
    • 84974715948 scopus 로고
    • Stochastic π-calculus
    • Priami, C.: Stochastic π-calculus-calculus. The Computer Journal 38, 578-589 (1995)
    • (1995) The Computer Journal , vol.38 , pp. 578-589
    • Priami, C.1
  • 25
    • 0035888407 scopus 로고    scopus 로고
    • Application of a stochastic name-passing calculus to representation and simulation of molecular processes
    • Priami, C., Regev, A., Shapiro, E., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inform. Process. Lett. 80, 25-31 (2001)
    • (2001) Inform. Process. Lett. , vol.80 , pp. 25-31
    • Priami, C.1    Regev, A.2    Shapiro, E.3    Silverman, W.4
  • 27
    • 0037179670 scopus 로고    scopus 로고
    • Cells as computation
    • Regev, A., Shapiro, E.: Cells as computation. Nature 419, 343 (2002)
    • (2002) Nature , vol.419 , pp. 343
    • Regev, A.1    Shapiro, E.2
  • 28
    • 33644516416 scopus 로고    scopus 로고
    • The π-calculus as an abstraction for biomolecular systems
    • Springer, Heidelberg
    • Regev, A., Shapiro, E.: The π-calculus-calculus as an abstraction for biomolecular systems. In: Modelling in Molecular Biology. Natural Computing Series, pp. 219-266. Springer, Heidelberg (2004)
    • (2004) Modelling in Molecular Biology. Natural Computing Series , pp. 219-266
    • Regev, A.1    Shapiro, E.2
  • 29
    • 0035235039 scopus 로고    scopus 로고
    • Representation and simulation of biochemical processes using the pi-calculus process algebra.
    • World Scientific Press, Singapore
    • Regev, A., Silverman, W., Shapiro, E.Y.: Representation and simulation of biochemical processes using the pi-calculus process algebra. In: Proc. of Pacific Symposium on Biocomputing, pp. 459-470. World Scientific Press, Singapore (2001)
    • (2001) Proc. of Pacific Symposium on Biocomputing , pp. 459-470
    • Regev, A.1    Silverman, W.2    Shapiro, E.Y.3
  • 30
    • 0031033798 scopus 로고    scopus 로고
    • Quorum sensing in Vibrio fischeri: Essential elements for activation of the luminescence genes
    • Stevens, A.M., Greenberg, E.P.: Quorum sensing in Vibrio fischeri: essential elements for activation of the luminescence genes. J. of Bacteriology 179, 557-562 (1997) (Pubitemid 27030413)
    • (1997) Journal of Bacteriology , vol.179 , Issue.2 , pp. 557-562
    • Stevens, A.M.1    Greenberg, E.P.2
  • 31
    • 0031729127 scopus 로고    scopus 로고
    • Cell-to-cell signaling and Pseudomonas aeruginosa infections
    • Van Delden, C., Iglewski, B.H.: Cell-to-cell signaling and Pseudomonas aeruginosa infections. Emerg. Infect. Dis. 4, 551-560 (1998) (Pubitemid 28553680)
    • (1998) Emerging Infectious Diseases , vol.4 , Issue.4 , pp. 551-560
    • Van Delden, C.1    Iglewski, B.H.2
  • 34
    • 0031105797 scopus 로고    scopus 로고
    • Mathematical model of the lac operon: Inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose
    • DOI 10.1021/bp970003o
    • Wong, P., Gladney, S., Keasling, J.D.: Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose. Biotechnology Progress 13, 132-143 (1997) (Pubitemid 27169866)
    • (1997) Biotechnology Progress , vol.13 , Issue.2 , pp. 132-143
    • Wong, P.1    Gladney, S.2    Keasling, J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.