A novel Rf gene controlling fertility restoration of ogura male sterility by RNA processing of orf138 found in japanese wild radish and its STS markers

Genome

Volumn 52, Issue 6, 2009, Pages 495-504

  Yasumoto, Keita ^a   Terachi, Toru ^a   Yamagishi, Hiroshi ^a  

^a KYOTO SANGYO UNIVERSITY   (Japan)

Author keywords

Cytoplasmic male sterility (CMS); Japanese wild radish; Raphanus sativus; Rf gene; RNA processing; STS marker

Indexed keywords

MITOCHONDRIAL PROTEIN; ORF138 PROTEIN, RAPHANUS SATIVUS; PLANT DNA; VEGETABLE PROTEIN;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CYTOPLASM; DRUG ANTAGONISM; GENETIC MARKER; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PLANT INFERTILITY; POLLEN; POLYMERASE CHAIN REACTION; RADISH; RNA PROCESSING; SEQUENCE TAGGED SITE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BASE SEQUENCE; BLOTTING, NORTHERN; CLONING, MOLECULAR; CYTOPLASM; DNA, PLANT; GENETIC MARKERS; MITOCHONDRIAL PROTEINS; MOLECULAR SEQUENCE DATA; PLANT INFERTILITY; PLANT PROTEINS; POLLEN; POLYMERASE CHAIN REACTION; RAPHANUS; RNA PROCESSING, POST-TRANSCRIPTIONAL; SEQUENCE TAGGED SITES;

OGURA; RAPHANUS SATIVUS; RAPHANUS SATIVUS VAR. NIGER;

EID: 67650300491     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G09-026     Document Type: Article

References (34)

1. Akagi, H., Nakamura, A., Yokozeki-Misono, Y., Inagaki, A., Takahashi, H., Mori, K., and Fujimura, T. 2004. Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein. Theor. Appl. Genet. 108: 1449-1457. doi:10.1007/s00122-004-1591-2. PMID:14968308.
2. Andrés, C., Lurin, C., and Small, I.D. 2007. The multifarious roles of PPR proteins in plant mitochondrial gene expression. Physiol. Plant. 129: 14-22. doi:10.1111/j.1399-3054.2006.00766.x.
3. Bellaoui, M., Pelletier, G., and Budar, F. 1997. The steady-state level of mRNA from the Ogura cytoplasmic male sterility locus in Brassica cybrids is determined post-transcriptionally by its 3′ region. EMBO J. 16(16): 5057-5068. doi:10.1093/emboj/16.16. 5057. PMID:9305647.
4. Bentolila, S., Alfonso, A.A., and Hanson, M.R. 2002. A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Proc. Natl. Acad. Sci. U.S.A. 99: 10887-10892. doi:10.1073/pnas. 102301599. PMID:12136123.
5. Bett, K.E., and Lydiate, D.J. 2004. Mapping and genetic characterization of loci controlling the restoration of male fertility in Ogura CMS radish. Mol. Breed. 13: 125-133. doi:10.1023/ B:MOLB.0000018759.27223.02.
6. Bonhomme, S., Budar, F., Férault, M., and Pelletier, G. 1991. A 2.5 kb NcoI fragment of Ogura radish mitochondrial DNA is correlated with cytoplasmic male-sterility in Brassica cybrids. Curr. Genet. 19: 121-127. doi:10.1007/BF00326293.
7. Bonhomme, S., Budar, F., Lancelin, D., Small, I., Defrance, M.-C., and Pelletier, G. 1992. Sequence and transcript analysis of the Nco2.5 Ogura-specific fragment correlated with cytoplasmic male sterility in Brassica cybrids. Mol. Gen. Genet. 235: 340-348. doi:10.1007/BF00279379. PMID:1281515.
8. Brown, G.G., Formanová, N., Jin, H., Wargachuk, R., Dendy, C., Patil, P., et al. 2003. The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats. Plant J. 35: 262-272. doi:10.1046/j.1365-313X.2003.01799.x. PMID:12848830.
9. Budar, F., and Berthomé, R. 2007. Cytoplasmic male sterilities and mitochondrial gene mutations in plants. In Plant mitochondria: annual plant reviews. Vol. 31. Edited by D.C. Logan. Blackwell Publishing Ltd., Oxford, U.K. pp. 278-307.
10. Desloire, S., Gherbi, H., Laloui, W., Marhadour, S., Clouet, V., Cattolico, L., et al. 2003. Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptiderepeat protein family. EMBO Rep. 4: 588-594. doi:10.1038/sj. embor.embor848. PMID:12740605.
11. Giancola, S., Rao, Y., Chaillou, S., Hiard, S., Martin-Canadell, A., Pelletier, G., and Budar, F. 2007. Cytoplasmic suppression of Ogura cytoplasmic male sterility in European natural populations of Raphanus raphanistrum. Theor. Appl. Genet. 114: 1333-1343. doi:10.1007/s00122-007-0520-6. PMID:17318491.
12. Grelon, M., Budar, F., Bonhomme, S., and Pelletier, G. 1994. Ogura cytoplasmic male-sterility (CMS)-associated orf138 is translated into a mitochondrial membrane polypeptide in male-sterile Brassica cybrids. Mol. Gen. Genet. 243: 540-547. doi:10.1007/BF00284202. PMID:8208245.
13. Hanson, M.R., and Bentolila, S. 2004. Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell, 16(Suppl.): S154-S169. doi:10.1105/tpc.015966. PMID:15131248.
14. Kazama, T., and Toriyama, K. 2003. A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice. FEBS Lett. 544: 99-102. doi:10.1016/S0014-5793(03) 00480-0. PMID:12782297.
15. Klein, R.R., Klein, P.E., Mullet, J.E., Minx, P., Rooney, W.L., and Schertz, K.F. 2005. Fertility restorer locus Rf1 of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12. Theor. Appl. Genet. 111: 994-1012. doi:10.1007/s00122-005-2011-y. PMID:16078015.
16. Koizuka, N., Imai, R., Iwabuchi, M., Sakai, T., and Imamura, J. 2000. Genetic analysis of fertility restoration and accumulation of ORF125 mitochondrial protein in the kosena radish (Raphanus sativus cv. Kosena) and a Brassica napus restorer line. Theor. Appl. Genet. 100: 949-955. doi:10.1007/s001220051375.
17. Koizuka, N., Imai, R., Fujimoto, H., Hayakawa, T., Kimura, Y., Kohno-Murase, J., et al. 2003. Genetic characterization of a pen-tatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish. Plant J. 34: 407-415. doi:10.1046/j.1365- 313X.2003.01735.x. PMID:12753581.
18. Komori, T., Ohta, S., Murai, N., Takakura, Y., Kuraya, Y., Suzuki, S., et al. 2004. Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.). Plant J. 37: 315-325. doi:10. 1046/j.1365-313X.2003.01961.x. PMID:14731253.
19. Krishnasamy, S., and Makaroff, C.A. 1993. Characterization of the radish mitochondrial orfB locus: possible relationship with male sterility in Ogura radish. Curr. Genet. 24: 156-163. doi:10.1007/ BF00324680. PMID:8358822.
20. Krishnasamy, S., and Makaroff, C.A. 1994. Organ-specific reduction in the abundance of a mitochondrial protein accompanies fertility restoration in cytoplasmic male-sterile radish. Plant Mol. Biol. 26: 935-946. doi:10.1007/BF00028860. PMID: 8000006.
21. Laemmli, U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227: 680-685. doi:10.1038/227680a0. PMID:5432063.
22. Liu, Y.-G., Mitsukawa, N., Oosumi, T., and Whittier, R.F. 1995. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8(3): 457-463. doi:10.1046/j.1365-313X.1995.08030457.x. PMID: 7550382.
23. Lurin, C., Andrés, C., Aubourg, S., Bellaoui, M., Bitton, F., Bruyere, C., et al. 2004. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell, 16: 2089-2103. doi:10.1105/ tpc.104.022236. PMID:15269332.
24. Murayama, K., Yahara, T., and Terachi, T. 2004. Variation of female frequency and cytoplasmic male-sterility gene frequency among natural gynodioecious populations of wild radish (Raphanus sativus L.). Mol. Ecol. 13: 2459-2464. doi:10.1111/j. 1365-294X.2004.02231.x. PMID:15245417.
25. Ogura, H. 1968. Studies on the new male-sterility in Japanese radish, with special reference to the utilization of this sterility towards the practical raising of hybrid seeds. Mem. Fac. Agric. Kagoshima Univ. 6: 39-78.
26. Schmitz-Linneweber, C., and Small, I. 2008. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13: 663-670. doi:10.1016/j.tplants.2008.10.001. PMID: 19004664.
27. Wang, Z., Zou, Y., Li, X., Zhang, Q., Chen, L., Wu, H., et al. 2006. Cytoplasmic male sterility of rice with Boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell, 18: 676-687. doi:10.1105/tpc.105. 038240. PMID:16489123.
28. Yamagishi, H., and Terachi, T. 1994. Molecular and biological studies on male sterile cytoplasm in Cruciferae. II. The origin of Ogura male sterile cytoplasm inferred from the segregation pattern of male sterility in the F1 progeny of wild and cultivated radishes (Raphanus sativus L.). Euphytica, 80: 201-206. doi:10. 1007/BF00039651.
29. Yamagishi, H., and Terachi, T. 1996. Molecular and biological studies on male sterile cytoplasm in the Cruciferae. III. Distribution of Ogura-type cytoplasm among Japanese wild radishes and Asian radish cultivars. Theor. Appl. Genet. 93: 325-332. doi:10.1007/BF00223172.
30. Yamagishi, H., and Terachi, T. 1997. Molecular and biological studies on male sterile cytoplasm in the Cruciferae. IV. Ogura-type cytoplasm found in the wild radish, Raphanus raphanistrum. Plant Breed. 116: 323-329. doi:10.1111/j.1439-0523.1997. tb01006.x.
31. Yamagishi, H., and Terachi, T. 2001. Intra- and inter-specific variations in the mitochondrial gene orf138 of Ogura-type malesterile cytoplasm from Raphanus sativus and Raphanus raphanistrum. Theor. Appl. Genet. 103: 725-732. doi:10.1007/ s001220100614.
32. Yang, S., Terachi, T., and Yamagishi, H. 2008. Inhibition of chalcone synthase expression in anthers of Raphanus sativus with Ogura male sterile cytoplasm. Ann. Bot. (Lond.), 102(4): 483-489. doi:10.1093/aob/mcn116. PMID:18625698.
33. Yasumoto, K., Matsumoto, Y., Terachi, T., and Yamagishi, H. 2008a. Restricted distribution of orf687 as the pollen fertility restorer gene for Ogura male sterility in Japanese wild radish. Breed. Sci. 58: 177-182. doi:10.1270/jsbbs.58.177.
34. Yasumoto, K., Nagashima, T., Umeda, T., Yoshimi, M., Yamagishi, H., and Terachi, T. 2008b. Genetic and molecular analysis of the restoration of fertility (Rf) genes for Ogura male-sterility from a Japanese wild radish (Raphanus sativus var. hortensis f. raphanistroides Makino). Euphytica, 164: 395-404. doi:10.1007/ s10681-008-9687-4.