MicroRNA: A new entrance to the broad paradigm of systems molecular medicine

Physiological Genomics

Volumn 38, Issue 2, 2009, Pages 113-115

  Liang, Mingyu ^a  

^a MEDICAL COLLEGE OF WISCONSIN   (United States)

Author keywords

Disease; Genomics; Proteomics; Systems biology

Indexed keywords

MICRORNA;

CLINICAL MEDICINE; EXPERIMENTAL STUDY; GENE CONTROL; GENOMICS; INTERVENTION STUDY; MOLECULAR BIOLOGY; NONHUMAN; PRIORITY JOURNAL; SCIENCE; SHORT SURVEY;

GENE EXPRESSION REGULATION; GENE REGULATORY NETWORKS; GENETICS, MEDICAL; GENOMICS; MICRORNAS; SYSTEMS BIOLOGY;

EID: 67650263841     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00080.2009     Document Type: Short Survey

References (21)

1. Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 18: 758-762, 2008.
2. Bhaskaran M, Wang Y, Zhang H, Weng T, Baviskar PS, Guo Y, Gou D, Liu L. MicroRNA-127 modulates fetal lung development. Physiol Genomics 37: 268-278, 2009.
3. Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP. Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues. Physiol Genomics 29: 35-43, 2007.
4. Eulalio A, Huntzinger E, Izaurralde E. Getting to the root of miRNA-mediated gene silencing. Cell 132: 9-14, 2008.
5. Fazi F, Nervi C. MicroRNA: basic mechanisms and transcriptional regulatory networks for cell fate determination. Cardiovasc Res 79: 553-561, 2008.
6. Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114, 2008.
7. German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 26: 941-946, 2008.
8. Grosshans H, Filipowicz W. Proteomics joins the search for microRNA targets. Cell 134: 560-562, 2008.
9. Gustin MP, Paultre CZ, Randon J, Bricca G, Cerutti C. Functional meta-analysis of double connectivity in gene coexpression networks in mammals. Physiol Genomics 34: 34-41, 2008.
10. Ikeda S, Kong SW, Lu J, Bisping E, Zhang H, Allen PD, Golub TR, Pieske B, Pu WT. Altered microRNA expression in human heart disease. Physiol Genomics 31: 367-373, 2007.
11. Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414, 2007.
12. Latronico MV, Catalucci D, Condorelli G. MicroRNA and cardiac pathologies. Physiol Genomics 34: 239-242, 2008.
13. Liang M. Pathway knowledgebase as a tool for systems molecular medicine (perspectives). Physiol Genomics 30: 209-212, 2007.
14. Liang M, Lee NH, Wang H, Greene AS, Kwitek AE, Kaldunski ML, Luu TV, Frank BC, Bugenhagen S, Jacob HJ, Cowley AW Jr. Molecular networks in Dahl salt-sensitive hypertension based on transcriptome analysis of a panel of consomic rats. Physiol Genomics 34: 54-64, 2008.
15. Liang M, Liu Y, Mladinov D, Cowley AW Jr, Trivedi H, Fang Y, Xu X, Ding X, Tian Z. MicroRNA: a new frontier in kidney and blood pressure research. Am J Physiol Renal Physiol. In press. First published April 1, 2009; doi:10.1152/ajprenal.00045.2009.
16. Makeyev EV, Maniatis T. Multilevel regulation of gene expression by microRNAs. Science 319: 1789-1790, 2008.
17. Sengupta S, den Boon JA, Chen IH, Newton MA, Stanhope SA, Cheng YJ, Chen CJ, Hildesheim A, Sugden B, Ahlquist P. MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins. Proc Natl Acad Sci USA 105: 5874-5878, 2008.
18. Tian Z, Greene AS, Pietrusz JL, Matus IR, Liang M. MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis. Genome Res 18: 404-411, 2008.
19. Van Rooij E, Olson EN. microRNAs put their signatures on the heart. Physiol Genomics 31: 365-366, 2007.
20. Van Rooij E, Sutherland LB, Thatcher JE, DiMaio JM, Naseem RH, Marshall WS, Hill JA, Olson EN. Dysregulation of microRNAs after myocardial infarction reveals a role of miR-29 in cardiac fibrosis. Proc Natl Acad Sci USA 105: 13027-13032, 2008.
21. Zhang C. MicroRNomics: a newly emerging approach for disease biology. Physiol Genomics 33: 139-147, 2008.