II. Kinetic pathways of switching optical conformations in dsred by 2D fourier imaging correlation spectroscopy

Journal of Physical Chemistry B

Volumn 113, Issue 19, 2009, Pages 6854-6860

  Senning, Eric N ^a   Lott, Geoffrey A ^a   Fink, Michael C ^b   Marcus, Andrew H ^a  

^a UNIVERSITY OF OREGON   (United States)

^b Omega Optical Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

OPTICAL CORRELATION; PERMANENT MAGNETS; SUPRAMOLECULAR CHEMISTRY;

2D SPECTRA; BIO-MOLECULAR; CONFORMATIONAL FLUCTUATIONS; CONFORMATIONAL TRANSITIONS; FLUORESCENT PROTEIN; FOURIER IMAGING CORRELATION SPECTROSCOPY; KINETIC PATHWAY; NEW APPROACHES; OPTICAL SPECTROSCOPIC; OPTICAL SPECTROSCOPY; OPTICAL SWITCHING; POLARIZATION-MODULATED; TETRAMERIC COMPLEX; TIME-SCALE; TRANSITION PATHWAY;

PROBABILITY DISTRIBUTIONS;

EID: 67650076391     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp901542b     Document Type: Article

References (19)

1. Frauenfelder, H.; Wolynes, S. G.; Sligar, P. G. The energy landscapes and motions of proteins. Science 1991, 254, 1598-1603.
2. Miyashita, O.; Onuchic, J. N.; Wolynes, P. G. Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 12570-12575.
3. Henzler-Wildman, K. A.; Lei, M.; Thai, V.; Kerns, S. J.; Karplus, M.; Kern, D. A heirarchy of timescales in protein dynamics is linked to enzyme catalysis. Nature (London) 2007, 450, 913-918.
4. Boehr, D. B.; Dyson, H. J.; Wright, P. E. An NMR perspective on enzyme dynamics. Chem. Rev. 2006, 106, 3055-3079.
5. Hochstrasser, R. M. Two-dimensional spectroscopy at the infrared and optical frequencies. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 14190-14196.
6. Shaner, N. C.; Campbell, R. E.; Steinbach, P. A.; Giepmans, B. N. G.; Palmer, A. E.; Tsien, R. Y. Improved monomeric red, orange, and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol. 2004, 22, 1567-1572.
7. Wall, M. A.; Socolich, M.; Ranaganathan, R. The structural basis for red fluorescence in the tetrameric GFP homolog DsRed. Nat. Struct. Biol. 2000, 7, 1133-1138.
8. Gross, L. A.; Baird, G. S; Hoffman, R. C.; Baldridge, K. K.; Tsien, R. Y. The structure of the chromophore within DsRed, a red fluorescent protein from coral. ProC. natl. Acad. Sci. U.S.A. 2000, 97, 11990-11995.
9. Yarbrough, D.; Wachter, R. M.; Kallio, K.; Matz, M. V.; Remington, S. J. Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 462-467.
10. Baird, G. S.; Zacharias, D. A.; Tsien, R. Y. Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral. Proc. Natl.Acad. Sci U.S.A. 2000, 97, 11984-11989.
11. Garcia-Parajo, M. F.; Koopman, M.; van Dijk, E. M. H. P.; Subramaniam, V.; van Hulst, N. F. The nature of fluorescence emission in the red fluorescent protein DsRed, revealed by single-molecule detection. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 14392-14397.
12. Bonsma, S.; Gallus, J.; Konz, F.; Purchase, R.; Volker, S. Light-induced conformational changes and energy transfer in red fluorescent protein. J. Lumin. 2004, 107, 203-212.
13. Bonsma, S.; Purchase, R.; Jezowski, S.; Gallus, J.; Konz, F.; Volker, S. Green and red fluorescnt proteins: photo- and thermally induced dynamics probed by site-selective spectroscopy and hole burning. ChemPhysChem 2005, 6 , 838-849.
14. Heikal, A. A.; Hess, S. T.; Baird, G. S.; Tsien, R. Y.; Webb, W. W. Molecular spectroscopy and dynamics of intrinsically fluorescent proteins: coral red (dsRed) and yellow (Citrine). Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 11996-12001.
15. Malvezzi-Campeggi, F.; Jahnz, M.; Heinze, K. G.; Dittrich, P.; Schwille, P. Light-induced flickering of DsRed provides evidence for distinct and interconvertible fluorescence states. Biophys. J. 2001, 81, 1776-1785.
16. Schenk, A.; Ivanchenko, S.; Rocker, C.; Wiedenmann, J.; Nienhaus, G U. Photodynamics of red fluorescent proteins studied by fluorescence correlation spectroscopy. Biophys. J. 2004, 86, 384-394.
17. Lounis, B. J.; Deich, F. I.; Rosell, S. G.; Boxer, W. E. Moerner, Photophysics of DsRed, a red fluorescent protein, from the ensemble to the single-molecule level. J. Phys. Chem. B 2001, 105, 5048-5054.
18. Hendrix, J.; Flors, C.; Dedecker, P.; Hofkens, J.; Engelborghs, Y. Dark states in moneric red fluorescent proteins studied by fluorescence correlation and single molecule spectroscopy. Biophys. J. 2008, 94, 4103-4113.
19. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: Oxford, U.K., 1995.