Microbial experimental evolution

American Journal of Physiology - Regulatory Integrative and Comparative Physiology

Volumn 297, Issue 1, 2009, Pages

  Bennett, Albert F ^a   Hughes, Bradley S ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Acidity; Adaptation; Bacteria; Fitness; Laboratory natural selection; Microbe; pH

Indexed keywords

MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MICROBIAL IDENTIFICATION; MICROBIAL POPULATION DYNAMICS; NATURAL SELECTION; PH; PRIORITY JOURNAL; REVIEW;

ADAPTATION, PHYSIOLOGICAL; BIOMEDICAL RESEARCH; CRYOPRESERVATION; ENVIRONMENT; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION; GENETICS, MICROBIAL; GENOTYPE; HYDROGEN-ION CONCENTRATION; MICROBIOLOGICAL TECHNIQUES; MUTATION; PHENOTYPE; POPULATION DENSITY; REPRODUCIBILITY OF RESULTS; REPRODUCTION; SELECTION (GENETICS); TIME FACTORS;

EID: 67650067065     PISSN: 03636119     EISSN: 15221490     Source Type: Journal    
DOI: 10.1152/ajpregu.90562.2008     Document Type: Review

References (59)

1. Ahn JH, Grant SB, Surbeck CQ, Digiacomo PM, Nezlin NP, Jiang SC. Coastal water quality impact of stormwater runoff from an urban watershed in southern California. Environ Sci Technol 39: 5940-5953, 2005. (Pubitemid 41170397)
2. Anonymous. Open citation, note 50. London, UK: Daily Telegraph. Feb. 19, 1887, p. 5.
3. Audia JP, Webb CC, Foster JW. Breaking through the acid barrier: an orchestrated response to proton stress by enteric bacteria. Int J Med Microbiol 291: 97-106, 2001. (Pubitemid 32532732)
4. Bartholomew GA. Interspecific comparison as a tool for ecological physiologists, In: New Directions in Ecological Physiology, edited by Feder ME, Bennett AF, Burggren WW, and Huey RB: Cambridge, UK: Cambridge University Press, 1987, p. 11-35.
5. Bennett AF, Dao KM, Lenski RE. Rapid evolution in response to high temperature selection. Nature 346: 79-81, 1990. (Pubitemid 20213944)
6. Bennett AF, Lenski RE, Mittler JE. Evolutionary adaptation to temperature. I. Fitness responses of Escherichia coli to changes in its thermal environment. Evolution 46: 16-30, 1992.
7. Bennett AF, Lenski RE. Evolutionary adaptation to temperature. II. Thermal niches of experimental lines of Escherichia coli. Evolution 47: 1-12, 1993. (Pubitemid 23403338)
8. Bennett AF, Lenski RE. Evolutionary adaptation to temperature: VI. Phenotypic acclimation and its evolution in Escherichia coli. Evolution 51: 36-44, 1997. (Pubitemid 27164663)
9. Bennett AF. Experimental evolution and the Krogh Principle: generating biological novelty for functional and genetic analyses. Physiol Biochem Zool 76: 1-11, 2003. (Pubitemid 36543783)
10. Bennett AF, Lenski RE. An experimental test of evolutionary tradeoffs during temperature adaptation. Proc Natl Acad Sci USA 104: 8649-8654, 2007. (Pubitemid 47175459)
11. Beumer RR, de Vries J, Rombouts FM. Campylobacter jejuni non-culturable coccoid cells. Int J Food Microbiol 15: 153-163, 1992.
12. Bull JJ, Badgett MR, Wichman HA, Huelsenbeck JP, Hillis DM, Gulati A, Ho C, Molineux IJ. Exceptional convergent evolution in a virus. Genetics 147: 1497-1507, 1997.
13. Clarkston WK, Pantano MM, Morley JE, Horowitz M, Littlefield JM, Burton FR. Evidence for the anorexia of aging: gastrointestinal transit and hunger in healthy elderly vs. young adults. Am J Physiol Regul Integr Comp Physiol 272: R243-R248, 1997. (Pubitemid 27068762)
14. Colegrave N, Collins S. Experimental evolution: experimental evolution and evolvability. Heredity 100: 464-470, 2008.
15. Dallinger WH. The president's address. J R Microsc Soc 10: 185-199, 1887.
16. Dressman JB, Berardi RR, Dermentzoglou LC, Russell TL, Schmaltz SP, Barnett JL, Jarvenpaa KM. Upper gastrointestinal (GI) pH in young, healthy men and women. Pharm Res 7: 756-761, 1990. (Pubitemid 20278376)
17. Dykhuizen DE. Experimental studies of natural selection in bacteria. Annu Rev Ecol Syst 21: 378-398, 1990.
18. Dziuban EJ, Liang JL, Craun GF, Hill V, Yu PA, Painter P, Moore MR, Calderon RL, Roy SL, Beach MJ. Surveillance for waterborne disease and outbreaks associated with recreational water-United States, 2003-2004. MMWR Surveill Summ 55: 1-30, 2006.
19. Feder ME. Environmental variability and thermal acclimation in neotropical and temperate zone salamanders. Physiol Zool 51: 7-16, 1978.
20. Fisher RA. The Design of Experiments. Edinburgh, UK: Oliver & Boyd, 1935.
21. Futuyma DJ. Evolutionary Biology (3rd ed.). Sunderland, MA: Sinauer Associates, 1998.
22. Garland T, Kelly SA. Phenotypic plasticity and experimental evolution. J Exp Biol 209: 2344-2361, 2006.
23. Garland T, Rose MR. Experimental Evolution: Concepts, Methods, Applications. Berkeley, CA: University of California Press. In press.
24. Gould SJ. Wonderful Life: The Burgess Shale and the Nature of History. New York: Norton. 1989.
25. Guyton AC, Hall JE. Textbook of Medical Physiology (10th ed.). Philadelphia, PA: Saunders, 2000.
26. Haas JW. The Reverend Dr. William Henry Dallinger, F.R.S. Notes Rec R Soc Lond 54: 56-65, 2000.
27. Hochachka PW, Somero GN. Biochemical Adaptation Mechanism and Process in Physiological Evolution. New York: Oxford University Press, 2002.
28. Huey RB, Hertz PE, Sivervo B. Behavioral drive versus behavioral inertia in evolution: a null model approach. Am Nat 161: 357-366, 2003. (Pubitemid 36391912)
29. Hughes BS, Cullum AJ, Bennett AF. Evolutionary adaptation to environmental pH in experimental lineages of Escherichia coli. Evolution 61: 1725-1734, 2007. (Pubitemid 47013473)
30. Hughes BS, Cullum AJ, Bennett AF. An experimental evolutionary study on adaptation to temporally fluctuating pH in Escherichia coli. Physiol Biochem Zool 80: 406-421, 2007. (Pubitemid 46982766)
31. Hughes BS. Spiraling Evolutionary Patterns in Cycling Environments: The Experimental Evolution of Physiologically Superior Ecological Generalists (PhD thesis). Irvine, CA: University of California Irvine, 2007.
32. Hughes BS. Evolutionary patterns of Escherichia coli growth in seawater determined with a Host to Coast Environmental Laboratory Analog. Aquat Microb Ecol 53: 243-255, 2008.
33. Jimenez L, Muniz I, Toranzos GA, Hazen TC. Survival and activity of Salmonella typhimurium and Escherichia coli in tropical freshwater. J Appl Bacteriol 67: 61-69, 1989. (Pubitemid 19204266)
34. Krogh A. Progress of physiology. Am J Physiol 90: 243-251, 1929.
35. Lenski RE, Rose MR, Simpson SC, Tadler SC. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2000 generations. Am Nat 138: 1315-1341, 1991.
36. Lenski RE. Experimental evolution. In: Encyclopedia of Microbiology, edited by Lederberg J. San Diego CA: Academic, 1992, vol.2, p. 125-140.
37. Lenski RE. Evolution in experimental populations of bacteria. In: Population Genetics of Bacteria (Society for General Microbiology Symposium Series), edited by Baumberg S, Young P, Wellington E, and Saunders J: Cambridge, UK: Cambridge University Press, 1995, p. 193-215.
38. Lenski RE, Winkworth CL, Riley MA. Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations. J Mol Evol 56: 498-508, 2003. (Pubitemid 36390780)
39. Leroi AM, Bennett AF, Lenski RE. Temperature acclimation and competitive fitness: an experimental test of the beneficial acclimation assumption. Proc Natl Acad Sci USA 91: 1917-1921, 1994. (Pubitemid 24080317)
40. Leroi AM, Lenski RE, Bennett AF. Evolutionary adaptation to temperature. III. Adaptation of Escherichia coli to a temporally varying environment. Evolution 48: 1222-1229, 1994.
41. Levins R. Evolution in Changing Environments. Princeton, NJ: Princeton University Press, 1968.
42. Levins R. Thermal acclimation and heat resistance in Drosophila species. Am Nat 103: 483-499, 1969.
43. Levin BR, Lenski RE. Coevolution in bacteria and their viruses and plasmids. In: Coevolution, edited by Futuyma DJ and Slatkin M. Sunderland MA: Sinauer Associates, 1983, p. 99-127.
44. Naugle AL, Holt KG, Levine P, Eckel R. Sustained decrease in the rate of Escherichia coli O157:H7-positive raw ground beef samples tested by the Food Safety and Inspection Service. J Food Prot 69: 480-481, 2006.
45. Noble RT, Weisberg SB, Leecaster MK, McGee CD, Dorsey JH, Vainik P, Orozco-Borbon V. Storm effects on regional beach water quality along the southern California shoreline. J Water Health 1: 23-31, 2003.
46. Ostrowski EA, Woods RJ, Lenski RE. The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli. Proc R Soc Lond B Biol Sci 275: 277-284, 2008. (Pubitemid 350295709)
47. Platt JR. Strong inference. Science 146: 347-353, 1964.
48. Prosser CL. Adaptational Biology: Molecules to Organisms. New York: Wiley, 1986, p. 766.
49. Reihle MM, Bennett AF, Long AD. Differential patterns of gene expression and gene complement in laboratory-evolved lines of E. coli. Integr Comp Biol 45: 532-538, 2005. (Pubitemid 41040148)
50. Russell TL, Berardi RR, Barnett JL, Dermentzoglou LC, Jarvenpaa KM, Schmaltz SP, Dressman JB. Upper gastrointestinal pH in seventy-nine healthy, elderly, North American men and women. Pharm Res 10: 187-196, 1993. (Pubitemid 23041729)
51. Savageau MA. Escherichia coli habitats, cell types, and molecular mechanisms of gene control. Am Nat 122: 732-744, 1983. (Pubitemid 15272266)
52. Scheiner SM. Genetics and evolution of phenotypic plasticity. Annu Rev Ecol Syst 24: 35-68, 1993.
53. Strange K. Revisiting the Krogh Principle in the post-genome era: Caenorhabditis elegans as a model system for integrative physiology research. J Exp Biol 210: 1622-1631, 2007. (Pubitemid 46841968)
54. Tamplin ML. Inactivation of Escherichia coli O157:H7 in simulated human gastric fluid. Appl Environ Microbiol 71: 320-325, 2005. (Pubitemid 40116284)
55. Terblanche JS, Chown SL. The relative contributions of developmental plasticity and adult acclimation to physiological variation in the tsetse fly, Glossina pallidipes (Diptera, Glossinidae). J Exp Biol 209: 1064-1073, 2006.
56. Tsuji JS. Thermal acclimation of metabolism in Sceloporus lizards from different latitudes. Physiol Zool 61: 241-253, 1988.
57. Watson MJO, Hoffman AA. Cross-generation effects for cold resistance in tropical populations of Drosophila melanogaster and Drosophila simulans. Aust J Zool 43: 51-58, 1995. (Pubitemid 26451865)
58. Woods R, Schneider D, Winkworth CL, Riley MA, Lenski RA. Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. Proc Natl Acad Sci USA 103: 9107-9112, 2006. (Pubitemid 43902541)
59. Zhong S, Khodursky A, Dykhuizen DE, Dean AM. Evolutionary genomics of ecological specialization. Proc Natl Acad Sci USA 101: 11719-11724, 2004.