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Volumn 19, Issue 7, 2009, Pages 1184-1194

Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BYSTANDER EFFECT; CELL DIFFERENTIATION; CHROMOSOME MAP; CONTROLLED STUDY; DNA FLANKING REGION; EMBRYONIC STEM CELL; GENE EXPRESSION REGULATION; GENE LOCUS; GENETIC TRANSCRIPTION; HOX B GENE; HOX D GENE; HOX GENE; HUMAN; HUMAN CELL; PRIORITY JOURNAL; UPREGULATION;

EID: 67650064596     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.089045.108     Document Type: Article
Times cited : (53)

References (34)
  • 1
    • 0032487442 scopus 로고    scopus 로고
    • Transcription sites are not correlated with chromosome territories in wheat nuclei
    • Abranches R, Beven AF, Ragon-Alcaide L, Shaw PJ. 1998. Transcription sites are not correlated with chromosome territories in wheat nuclei. J Cell Biol 143: 5-12.
    • (1998) J Cell Biol , vol.143 , pp. 5-12
    • Abranches, R.1    Beven, A.F.2    Ragon-Alcaide, L.3    Shaw, P.J.4
  • 2
    • 0141706718 scopus 로고    scopus 로고
    • Inheritance of Polycomb-dependent chromosomal interactions in Drosophila
    • Bantignies F, Grimaud C, Lavrov S, Gabut M, Cavalli G. 2003. Inheritance of Polycomb-dependent chromosomal interactions in Drosophila. Genes & Dev 17: 2406-2420.
    • (2003) Genes & Dev , vol.17 , pp. 2406-2420
    • Bantignies, F.1    Grimaud, C.2    Lavrov, S.3    Gabut, M.4    Cavalli, G.5
  • 3
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • doi: 10.1371/journal.pbio. 0040138
    • Branco MR, Pombo A. 2006. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 4: e138. doi: 10.1371/journal.pbio. 0040138.
    • (2006) PLoS Biol , vol.4
    • Branco, M.R.1    Pombo, A.2
  • 8
    • 2442695407 scopus 로고    scopus 로고
    • Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
    • Chambeyron S, Bickmore WA. 2004. Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription. Genes & Dev 18: 1119-1130.
    • (2004) Genes & Dev , vol.18 , pp. 1119-1130
    • Chambeyron, S.1    Bickmore, W.A.2
  • 9
    • 19744379789 scopus 로고    scopus 로고
    • Nuclear reorganisation of the Hoxb complex during mouse embryonic development
    • Chambeyron S, Da Silva NR, Lawson KA, Bickmore WA. 2005. Nuclear reorganisation of the Hoxb complex during mouse embryonic development. Development 132: 2215-2223.
    • (2005) Development , vol.132 , pp. 2215-2223
    • Chambeyron, S.1    Da Silva, N.R.2    Lawson, K.A.3    Bickmore, W.A.4
  • 10
    • 1042300233 scopus 로고    scopus 로고
    • X chromosome inactivation in mouse embryonic stem cells: Analysis of histone modifications and transcriptional activity using immunofluorescence and FISH
    • Chaumeil J, Okamoto I, Heard E. 2004. X chromosome inactivation in mouse embryonic stem cells: Analysis of histone modifications and transcriptional activity using immunofluorescence and FISH. Methods Enzymol 376: 405-419.
    • (2004) Methods Enzymol , vol.376 , pp. 405-419
    • Chaumeil, J.1    Okamoto, I.2    Heard, E.3
  • 11
    • 0033499692 scopus 로고    scopus 로고
    • Functional analysis of the DXPas34 locus, a 3′ regulator of Xist expression
    • Debrand E, Chureau C, Arnaud D, Avner P, Heard E. 1999. Functional analysis of the DXPas34 locus, a 3′ regulator of Xist expression. Mol Cell Biol 19: 8513-8525.
    • (1999) Mol Cell Biol , vol.19 , pp. 8513-8525
    • Debrand, E.1    Chureau, C.2    Arnaud, D.3    Avner, P.4    Heard, E.5
  • 13
    • 45549102596 scopus 로고    scopus 로고
    • The nuclear organization of Polycomb/Trithorax group response elements in larval tissues of Drosophila melanogaster
    • Fedorova E, Sadoni N, Dahlsveen IK, Koch J, Kremmer E, Eick D, Paro R, Zink D. 2008. The nuclear organization of Polycomb/Trithorax group response elements in larval tissues of Drosophila melanogaster. Chromosome Res 16: 649-673.
    • (2008) Chromosome Res , vol.16 , pp. 649-673
    • Fedorova, E.1    Sadoni, N.2    Dahlsveen, I.K.3    Koch, J.4    Kremmer, E.5    Eick, D.6    Paro, R.7    Zink, D.8
  • 14
    • 1642350730 scopus 로고    scopus 로고
    • Evolution of the Hox/ParaHox gene clusters
    • Ferrier DE, Minguillon C. 2003. Evolution of the Hox/ParaHox gene clusters. Int J Dev Biol 47: 605-611.
    • (2003) Int J Dev Biol , vol.47 , pp. 605-611
    • Ferrier, D.E.1    Minguillon, C.2
  • 15
    • 34249307315 scopus 로고    scopus 로고
    • Nuclear organization of the genome and the potential for gene regulation
    • Fraser P, Bickmore W. 2007. Nuclear organization of the genome and the potential for gene regulation. Nature 447: 413-417.
    • (2007) Nature , vol.447 , pp. 413-417
    • Fraser, P.1    Bickmore, W.2
  • 17
    • 0037049641 scopus 로고    scopus 로고
    • The transcription cycle of RNA polymerase II in living cells
    • Kimura H, Sugaya K, Cook PR. 2002. The transcription cycle of RNA polymerase II in living cells. J Cell Biol 159: 777-782.
    • (2002) J Cell Biol , vol.159 , pp. 777-782
    • Kimura, H.1    Sugaya, K.2    Cook, P.R.3
  • 18
    • 33947712256 scopus 로고    scopus 로고
    • Positioning of the mouse Hox gene clusters in the nuclei of developing embryos and differentiating embryoid bodies
    • Lanctot C, Kaspar C, Cremer T. 2007. Positioning of the mouse Hox gene clusters in the nuclei of developing embryos and differentiating embryoid bodies. Exp Cell Res 313: 1449-1459.
    • (2007) Exp Cell Res , vol.313 , pp. 1449-1459
    • Lanctot, C.1    Kaspar, C.2    Cremer, T.3
  • 19
    • 0036613754 scopus 로고    scopus 로고
    • Clustering of housekeeping genes provides a unified model of gene order in the human genome
    • Lercher MJ, Urrutia AO, Hurst LD. 2002. Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat Genet 31: 180-183.
    • (2002) Nat Genet , vol.31 , pp. 180-183
    • Lercher, M.J.1    Urrutia, A.O.2    Hurst, L.D.3
  • 20
    • 0037049548 scopus 로고    scopus 로고
    • Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH
    • Mahy NL, Perry PE, Bickmore WA. 2002. Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH. J Cell Biol 159: 753-763.
    • (2002) J Cell Biol , vol.159 , pp. 753-763
    • Mahy, N.L.1    Perry, P.E.2    Bickmore, W.A.3
  • 21
    • 34248593510 scopus 로고    scopus 로고
    • Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation
    • Morey C, Da Silva NR, Perry P, Bickmore WA. 2007. Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation. Development 134: 909-919.
    • (2007) Development , vol.134 , pp. 909-919
    • Morey, C.1    Da Silva, N.R.2    Perry, P.3    Bickmore, W.A.4
  • 23
    • 41949142533 scopus 로고    scopus 로고
    • Noordermeer, D, Branco MR, Splinter E, Klous P, van IJcken W, Swagemakers S, Koutsourakis M, van der Spek P, Pombo A, de Laat W. 2008. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region. PLoS Genet 4: e1000016. doi: 10.1371/journal.pgen.1000016.
    • Noordermeer, D, Branco MR, Splinter E, Klous P, van IJcken W, Swagemakers S, Koutsourakis M, van der Spek P, Pombo A, de Laat W. 2008. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region. PLoS Genet 4: e1000016. doi: 10.1371/journal.pgen.1000016.
  • 25
    • 0141706933 scopus 로고    scopus 로고
    • Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: Evidence for local euchromatic neighborhoods
    • Shopland LS, Johnson CV, Byron M, McNeil J, Lawrence JB. 2003. Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: Evidence for local euchromatic neighborhoods. J Cell Biol 162: 981-990.
    • (2003) J Cell Biol , vol.162 , pp. 981-990
    • Shopland, L.S.1    Johnson, C.V.2    Byron, M.3    McNeil, J.4    Lawrence, J.B.5
  • 27
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • de LaatW
    • Simonis M, Klous P Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de LaatW. 2006. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 38: 1348-1354.
    • (2006) Nat Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5    de Wit, E.6    van Steensel, B.7
  • 28
    • 14544301584 scopus 로고    scopus 로고
    • Clusters of co-expressed genes in mammalian genomes are conserved by natural selection
    • Singer GA, Lloyd AT, Huminiecki LB, Wolfe KH. 2005. Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Mol Biol Evol 22: 767-775.
    • (2005) Mol Biol Evol , vol.22 , pp. 767-775
    • Singer, G.A.1    Lloyd, A.T.2    Huminiecki, L.B.3    Wolfe, K.H.4
  • 29
    • 25844496592 scopus 로고    scopus 로고
    • The role of chromatin structure in regulating the expression of clustered genes
    • Sproul D, Gilbert N, Bickmore WA. 2005. The role of chromatin structure in regulating the expression of clustered genes. Nat Rev Genet 6: 775-781.
    • (2005) Nat Rev Genet , vol.6 , pp. 775-781
    • Sproul, D.1    Gilbert, N.2    Bickmore, W.A.3
  • 32
    • 0033523776 scopus 로고    scopus 로고
    • Spatial relationship between transcription sites and chromosome territories
    • Verschure, P.J., van der Kraan I, Manders EM, van Driel R. 1999. Spatial relationship between transcription sites and chromosome territories. J Cell Biol 147: 13-24.
    • (1999) J Cell Biol , vol.147 , pp. 13-24
    • Verschure, P.J.1    van der Kraan, I.2    Manders, E.M.3    van Driel, R.4
  • 33
    • 0034065032 scopus 로고    scopus 로고
    • Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei
    • Volpi EV, Chevret E, Jones T, Vatcheva R, Williamson J, Beck S, Campbell RD, Goldsworthy M, Powis SH, Ragoussis J, et al. 2000. Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei. J Cell Sci 113: 1565-1576.
    • (2000) J Cell Sci , vol.113 , pp. 1565-1576
    • Volpi, E.V.1    Chevret, E.2    Jones, T.3    Vatcheva, R.4    Williamson, J.5    Beck, S.6    Campbell, R.D.7    Goldsworthy, M.8    Powis, S.H.9    Ragoussis, J.10
  • 34
    • 0036061468 scopus 로고    scopus 로고
    • Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei
    • Williams RR, Broad S, Sheer D, Ragoussis J. 2002. Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei. Exp Cell Res 272: 163-175.
    • (2002) Exp Cell Res , vol.272 , pp. 163-175
    • Williams, R.R.1    Broad, S.2    Sheer, D.3    Ragoussis, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.