Gene dates, parties and galas: Symposium on Chromatin Dynamics and Higher Order Organization

EMBO Reports

Volumn 10, Issue 7, 2009, Pages 689-693

  Chang, Howard Y ^a   Cuvier, Olivier ^b   Dekker, Job ^c  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b Université Paul Sabatier   (France)

^c UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COHESIN; DNA; KRUPPEL LIKE FACTOR; POLYCOMB GROUP PROTEIN; RNA;

CELL CYCLE; CELL NUCLEUS; CELLULAR DISTRIBUTION; CHROMATIN STRUCTURE; CHROMOSOMAL LOCALIZATION; CHROMOSOME POSITIONING; CHROMOSOME TRANSLOCATION; CONFERENCE PAPER; DNA BINDING MOTIF; DNA METHYLATION; DNA STRAND BREAKAGE; GENE FUNCTION; GENE INTERACTION; GENE LOCATION; GENE LOCUS; GENE SILENCING; GENETIC REGULATION; MOLECULAR DYNAMICS; NONHUMAN; NUCLEAR LOCALIZATION SIGNAL; NUCLEOTIDE BINDING SITE; NUCLEOTIDE REPEAT; PRIORITY JOURNAL;

ANIMALS; CHROMATIN; DROSOPHILA MELANOGASTER; GENOME; INSULATOR ELEMENTS; MICE; REPETITIVE SEQUENCES, NUCLEIC ACID; REPRESSOR PROTEINS; RNA, UNTRANSLATED;

EID: 67650032490     PISSN: 1469221X     EISSN: 14693178     Source Type: Journal    
DOI: 10.1038/embor.2009.136     Document Type: Conference Paper

References (23)

1. Bartkuhn M, Straub T, Herold M, Herrmann M, Rrathke C, Saumweber H, Gilfillan GD, Becker PB, Renkawitz Rr (2009) Active promoters and insulators are marked by the centrosomal protein 190. EMBO J 28 877-888
2. Dekker J (2008) Ggene regulation in the third dimension. Science 319: 1793-1794
3. Dekker J, Rippe K, Dekker M, Kleckner N (2002) Capturing chromosome conformation. Science 295: 1306-1311
4. Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rrando OJ (2007) Dynamics of replication-independent histone turnover in budding yeast. Science 315: 1405-1408
5. Dorsett D, Krantz ID (2009) On the molecular etiology of Cornelia de Lange syndrome. Ann NY Acad Sci 1151: 22-37
6. Dostie J et al (2006) Chromosome conformation capture carbon copy (5C): A massively parallel solution for mapping interactions between genomic elements. Genome Res 16: 1299-1309
7. Emberly E, Blattes R, Schuettengruber B, Hennion M, Jiang N, Hart CM, Kas E, Cuvier O (2008) BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites. PLoS Biol 6: 2896-2910
8. Gaszner M, Felsenfeld G (2006) Insulators: Exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 7: 703-713
9. Gerasimova TI, Lei EP, Bushey AM, Corces VG (2007) Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila. Mol Cell 28: 761-772
10. Gowher H, Stuhlmann H, Felsenfeld (2008) Vezf1 regulates genomic DNA methylation through its effects on expression of DNA methyltransferase Dnmt3b. Genes Dev 22: 2075-2084
11. Guttman M et al (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNA in mammals. Nature 458 223-227
12. Jin C, Felsenfeld G (2007) Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21: 1519-1529
13. Lefevre P, Witham J, Lacroix CE, Cockerill PN, Bonifer C (2008) The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription. Mol Cell 32: 129-139
14. Mito Y, Henikoff JG, Henikoff S (2007) Histone replacement marks the boundaries of cis-regulatory domains. Science 315: 1408-1411
15. Onn I, Heidinger-Pauli JM, Guacci V, Unal E, Koshland DE (2008) Sister chromatid cohesion: A simple concept with a complex reality. Annu Rev Cell Dev Biol 24: 105-129
16. Rinn JL et al (2007) Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129 1311-1323
17. Schuettengruber B, Chourrout D, Vervoort M, Leblanc B, Cavalli G (2007) Genome regulation by polycomb and trithorax proteins. Cell 128 735-745
18. Solovei I, Kreysing M, Lanctot C, Kosem S, Peichl L, Cremer T, Guck J, Joffe B (2009) Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution. Cell 137: 356-368
19. Terranova R, Yokobayashi S, Stadler MB, Otte AP, van Lohuizen M, Orkin SH, Peters AH (2008) Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos. Dev Cell 15: 668-679 668-679
20. Tiwari VK, McGarvey KM, Licchesi JD, Ohm JE, Herman JG, Schubeler D, Baylin SB (2008) PcG proteins, DNA methylation, and gene repression by chromatin looping. PLoS Biol 6: 2911-2927
21. Valenzuela L, Kamakaka RT (2006) Chromatin insulators. Annu Rev Genet 40: 107-138
22. Wang X, Aarai S, Song X, Rreichart D, Du K, Pascual G, Tempst P, Rosenfeld MG, Glass CK, Kurokawa R (2008) Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature 454: 126-130
23. Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT (2008) Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322: 750-756