Phylogeography of microtus longicaudus in the tectonically and glacially dynamic central rocky mountains

Journal of Mammalogy

Volumn 90, Issue 3, 2009, Pages 571-584

  Spaeth, P A ^a,d   Van Tuinen, M ^a,b   Terca, Y L Chan D ^a,c   Hadly, E A ^a  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF NORTH CAROLINA WILMINGTON   (United States)

^c UNIVERSITY OF HAWAII   (United States)

^d NESCent   (United States)

Author keywords

Ancient dna (adna); Cytochrome b; Dispersal; Greater yellowstone ecosystem; Microtus longicaudus; Phylogeography; Rocky mountains

Indexed keywords

ABUNDANCE; CYTOCHROME; DISPERSAL; DIVERGENCE; GENETIC ANALYSIS; GENETIC VARIATION; HOLOCENE; MORPHOLOGY; PHYLOGENETICS; PHYLOGEOGRAPHY; POPULATION STRUCTURE; RODENT; ZOOGEOGRAPHY;

NORTH AMERICA; ROCKY MOUNTAINS;

MICROTUS LONGICAUDUS; MURIDAE; RODENTIA;

EID: 67649994373     PISSN: 00222372     EISSN: None     Source Type: Journal    
DOI: 10.1644/08-MAMM-A-204R2.1     Document Type: Article

References (62)

1. ANDERSON, C. N. K., U. RAMAKRISHNAN, Y. L. CHAN, AND E. A. HADLY. 2005. Serial SimCoal: a population genetic model for data from multiple populations and points in time. Bioinformatics 21:1733- 1734.
2. AVISE, J. C. 2000. Phylogeography. Harvard University Press, Cambridge, Massachusetts.
3. BRUNSFELD, S. J., AND j. SULLIVAN. 2005. A multi-compartmented glacial refugium in the northern Rocky Mountains: evidence from the phylogeography of Cardamine constancei (Brassicaceae). Conservation Genetics 6:895-904.
4. BRUNSFELD, S. J., J. SULLIVAN, D. E. SOLTIS, AND P. S. SOLTIS. 2001. Comparative phylogeography of northwestern North America: a synthesis. Pp. 319-339 in Integrating ecology and evolution in a spatial context (J. Silvertown and J. Antonovics, eds.). Blackwell Science, London, United Kingdom.
5. BRUZGUL, J. E., AND E. A. HADLY. 2007. Non-random patterns in the Yellowstone Ecosystem: inferences from mammalian body size, order, and biogeographic affinity. Global Ecology and Biogeog- raphy 2:139-148.
6. CARSTENS, B. C, S. J. BRUNSFELD, J. R. DEMBOSKI, J. M. GOOD, AND J. SULLIVAN. 2005. Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis testing within a comparative phylogeographic framework. Evolution 59:1639-1652.
7. CLEMENT, M., D. POSADA, AND K. A. CRANDALL. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9:1657-1659.
8. CONROY, C. J., AND J. A. COOK. 2000a. Phylogeography of a postglacial colonizer: Microtus longicaudus (Rodentia: Muridae). Molecular Ecology 9:165-175.
9. CONROY, C. J., AND J. A. COOK. 2000b. Molecular systematics of a Holarctic rodent (Microtus: Muridae). Journal of Mammalogy 81:344-359.
10. CONROY, C. J., AND M. vAN TUINEN. 2003. Extracting time from phytogenies: positive interplay between fossil and genetic data. Journal of Mammalogy 84:444-455.
11. DALEN, L., et al. 2007. Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox. Proceedings of the National Academy of Sciences 104:6726-6729.
12. DECHAINE, E. G., AND A. P. MARTIN. 2005. Historical biogeography of two alpine butterflies in the Rocky Mountains: broad-scale concordance and local-scale discordance. Journal of Biogeography 32:1943-1956.
13. EMBOSKI, J. R., AND J. SULLIVAN. 2003. Extensive mtDNA variation within the yellow-pine chipmink, Tamias amoenus (Rodentia: Sciuridae), and phylogeographic inferences for northwest North America. Molecular Phylogenetics and Evolution 26:389-408.
14. DRUMMOND, A. J., AND A. RAMBAUT. 2003. BEAST v. 1.4.5. http:// best.bio.ed.as.uk/main-page. Accessed July 2008.
15. DRUMMOND, A. J., A. RAMBAUT, B. SHAPIRO, AND O. G. PYBUS. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution 22:1185- 1192.
16. FEDOROV, V. B., A. V. GOROPASHNAYA, M. JAAROLA, AND J. A. COOK. 2003. Phylogeography of lemmings (Lemmus): no evidence for postglacial colonization of the Arctic from the Beringian refugium. Molecular Ecology 12:725-731.
17. FERANEC, R. S., E. A. HADLY, AND A. PAYTAN. 2007. Determining landscape use of Holocene mammals using strontium isotopes. Oecologia 153:943-950.
18. FINK, S., L. EXCOFFIER, AND G. HECKEL. 2004. Mitochondrial gene diversity in the common vole Microtus arvalis shaped by historical divergence and local adaptation. Molecular Ecology 13:3501-3514.
19. GALBREATH, K. E., AND J. A. COOK. 2004. Genetic consequences of Pleistocene glaciations for the tundra vole (Microtus oeconomus) in Beringia. Molecular Ecology 13:135-148.
20. GANNON, W. L., R. S. SIKES, and the Animal Care and Use Committee of the American Society of Mammalogists. 2007. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 88:809-823.
21. GENNETT, J. A., AND R. G. BAKER. 1986. A late-Quaternary pollen sequence from Blacktail Pond, Yellowstone National Park, Wyoming, USA. Palynology 10:61-72.
22. GOOD, J. M., J. R. DEMBOSKI, D. W. NAGORSEN, AND J. SULLIVAN. 2003. Phylogeography and introgressive hybridization: chipmunks (genus Tamias) in the northern Rocky Mountains. Evolution 57:1900- 1916.
23. GOOD, J. M., AND J. SULLIVAN. 2001. Phylogeography of the red-tailed chipmunk (Tamias ruficaudus), a northern Rocky Mountain endemic. Molecular Ecology 10:2683-2695.
24. GRAHAM, R. W., et al. 1996. Spatial response of mammals to late Quaternary environmental fluctuations. Science 272:1601-1606.
25. HADLY, E. A. 1996. Influence of late-Holocene climate on northern Rocky Mountain mammals. Quaternary Research 46:298-310.
26. HADLY, E. A., M. H. KOHN, J. A. LEONARD, AND R. K. WAYNE. 1998. A genetic record of population isolation in pocket gophers during Holocene climatic change. Proceedings of the National Academy of Sciences 95:6893-6896.
27. HADLY, E. A., et al. 2004. Genetic response to climatic change: insights from ancient DNA and phylochronology. PLoS Biology 2:e290.
28. HADLY, E. A., M. vANTUINEN, Y. CHAN, AND K. HEIMAN. 2003. Ancient DNA evidence of prolonged population persistence with negligible genetic diversity in an endemic tuco-tuco (Ctenomys sociabilis). Journal of Mammalogy 84:403-417.
29. HAFNER, M. S., J. W. DEMASTES, D. J. HAFNER, T. A. SPRADLING, P. A. SUDMAN, AND S. A. NADLER. 1998. Age and movement of a hybrid zone: implications for dispersal distance in pocket gophers and their chewing lice. Evolution 52:278-282.
30. HALL, E. R. 1981. The mammals of North America. Wiley, New York.
31. HAYES, J. P., AND R. G. HARRISON. 1992. Variation in mitochondrial DNA and the biogeographic histories of woodrats (Neotoma) of the eastern United States. Systematic Biology 41:331-344.
32. HEWITT, G. M. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London, B. Biological Sciences 359:183-195.
33. HOFREITER, M., V. JAENICKE, D. SERRE, A. vON HAESELER, AND S. PÄÄBO. 2001. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Research 29:4793-799.
34. HOFREITER, M., et al. 2004. Lack of phylogeography in European mammals before the last glaciation. Proceedings of the National Academy of Sciences 101:12963-12968.
35. IRWIN, D. M., T. D. KOCHER, AND A. C. WILSON. 1991. Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution 32:128-144.
36. JAAROLA, M., et al. 2004. Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae: Rodentia) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 33:647-663.
37. JAAROLA, M., AND J. B. SEARLE. 2002. Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences. Molecular Ecology 11:2613-2621.
38. JENKINS, H. O. 1948. A population study of the meadow mice (Microtus) in three Sierra Nevada Meadows. Proceedings of the California Academy of Sciences 26:43-67.
39. KNOWLES, L. L. 2001. Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshoppers. Molecular Ecology 10:691-701.
40. LEONARD, J. A., R. K. WAYNE, AND A. COOPER. 2000. Population genetics of Ice Age brown bears. Proceedings of the National Academy of Sciences 97:1651-1654.
41. LESSA, E. P., J. A. COOK, AND J. L. PATTON. 2003. Genetic footprints of demographic expansion in North America, but not in Amazonia, during the late Quaternary. Proceedings of the National Academy of Sciences 100:10331-10334.
42. MATHEUS, P., J. BURNS, J. WEINSTOCK, AND M. HOFREITER. 2004. Pleistocene brown bears in the mid-continent of North America. Science 306:1150.
43. PÄÄBO, S., et al. 2004. Genetic analysis from ancient DNA. Annual Review of Genetics 38:645-679.
44. PIERCE, K. L. 1979. History and dynamics of glaciation in the northern Yellowstone National Park area. United States Geological Survey Professional Paper 79F: 1-90.
45. PORDER, S., A. PAYTAN, AND E. A. HADLY. 2003. Mapping the origin of faunal assemblages using strontium isotopes. Paleobiology 29:197-204.
46. POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
47. ROWE, K. C, E. J. HESKE, P. W. BROWN, AND K. N. PAIGE. 2004. Surviving the ice: northern refugia and post-glacial colonization. Proceedings of the National Academy of Sciences 101:10355-10359.
48. RUNCK, A. M., AND J. A. COOK. 2005. Postglacial expansion of the southern red-backed vole (Clethrionomys gapperi) in North America. Molecular Ecology 14:1445-1456.
49. SAGE, R. D., AND J. O. WOLFF. 1986. Pleistocene glaciations, fluctuations, and low genetic diversity in a large mammal (Ovis dalli). Evolution 40:1092-1095.
50. SCHNEIDER, S., D. ROESSLI, AND L. EXCOFFIER. 1999. Arlequin: a software for population genetics data analysis. Version 2.0. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
51. SMOLEN, M. J., AND B. L. KELLER. 1987. Microtus longicaudus. Mammalian Species 271:1-7.
52. SPAETH, P. A. 2009. Morphological convergence and coexistence in three sympatric North American species of Microtus (Rodentia: Arvicolinae). Journal of Biogeography 36:350-361.
53. SWENSON, N. G., AND D. J. HOWARD. 2005. Clustering of contact zones, hybrid zones and phylogeographic breaks in North America. American Naturalist 166:581-591.
54. SWOFFORD, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
55. TABERLET, P., L. FUMAGALLI, A. G. WUST- SAUCY, AND J. F. COSSON. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7:453-464.
56. TAMARIN, R. H. 1985. Biology of the New World Microtus. Special Publication 8, The American Society of Mammalogists.
57. vAN TUINEN, M., AND E. A. HADLY. 2004. Calibration and error in placental molecular clocks: a conservative approach using the cetartiodactyl fossil record. Journal of Heredity 95:200-208.
58. vAN TUINEN, M., K. O'KEEFE, U. RAMAKRISHNAN, AND E. A. HADLY. 2008. Fire and ice: genetic structure of the Uinta ground squirrel (Spermophilus armatus) across the Yellowstone Hotspot. Molecular Ecology 17:1776-1788.
59. VILA, C, et al. 1999. Mitochondrial DNA phylogeography and population history of the grey wolf Canis lupus. Molecular Ecology 8:2089-2103.
60. WALTARI, E., R. J. HUMANS, A. T. PETERSON, A. S. NYARI, S. L. PERKINS, AND R. P. GURALNICK. 2007. Locating Pleistocene refugia: comparing phylogeographic and ecological niche model predictions. PLoS ONE 2:e563.
61. WHITLOCK, C, AND P. J. BARTLEIN. 1993. Spatial variations of Holocene climatic change in the Yellowstone region. Quaternary Research 39:231-238.
62. ZHENG, X., B. S. ARBOGAST, AND G. J. KENAGY. 2003. Historical demography and genetic structure of sister species: deermice (Peromyscus) in the North American temperate rain forest. Molecular Ecology 12:711-724.