메뉴 건너뛰기




Volumn 11, Issue 7, 2009, Pages 1672-1681

A high-throughput and quantitative hierarchical oligonucleotide primer extension (HOPE)-based approach to identify sources of faecal contamination in water bodies

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PRIMER DNA; RIBOSOME DNA; RNA 16S;

EID: 67649957804     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2009.01892.x     Document Type: Article
Times cited : (24)

References (22)
  • 1
    • 0003425384 scopus 로고    scopus 로고
    • APHA, AWWA and WEF. Washington, DC, USA. American Public Health Association.
    • APHA, AWWA and WEF (1998) Standard Methods for Examination of Water and Wastewater. Washington, DC, USA : American Public Health Association.
    • (1998) Standard Methods for Examination of Water and Wastewater.
  • 2
    • 0034663473 scopus 로고    scopus 로고
    • Discrimination of primer 3'-nucleotide mismatch by Taq DNA polymerase during polymerase chain reaction
    • DOI 10.1006/abio.2000.4635
    • Ayyadevara, S., Thaden, J.J. Shmookler Reis, R.J. (2000) Discrimination of primer 3′-nucleotide mismatch by taq DNA polymerase during polymerase chain reaction. Anal Biochem 284 : 11 18. (Pubitemid 30679105)
    • (2000) Analytical Biochemistry , vol.284 , Issue.1 , pp. 11-18
    • Ayyadevara, S.1    Thaden, J.J.2    Shmookler Reis, R.J.3
  • 3
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • DOI 10.1128/AEM.66.4.1587-1594.2000
    • Bernhard, A.E. Field, K.G. (2000a) Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl Environ Microbiol 66 : 1587 1594. (Pubitemid 30185636)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.4 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 4
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
    • DOI 10.1128/AEM.66.10.4571-4574.2000
    • Bernhard, A.E. Field, K.G. (2000b) A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl Environ Microbiol 66 : 4571 4574. (Pubitemid 30768567)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.10 , pp. 4571-4574
    • Bernhard, A.E.1    Field, K.G.2
  • 7
    • 20444369467 scopus 로고    scopus 로고
    • Microplate subtractive hybridization to enrich for Bacteroidales genetic markers for fecal source identification
    • DOI 10.1128/AEM.71.6.3179-3183.2005
    • Dick, L.K., Simonich, M.T. Field, K.G. (2005b) Microplate subtractive hybridization to enrich for bacteroidales genetic markers for fecal source identification. Appl Environ Microbiol 71 : 3179 3183. (Pubitemid 40807228)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.6 , pp. 3179-3183
    • Dick, L.K.1    Simonich, M.T.2    Field, K.G.3
  • 8
    • 3142745450 scopus 로고    scopus 로고
    • A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking
    • Field, K.G., Chern, E.C., Dick, L.K., Fuhrman, J., Griffith, J., Holden, P.A., et al. (2003) A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. J Water Health 1 : 181 194.
    • (2003) J Water Health , vol.1 , pp. 181-194
    • Field, K.G.1    Chern, E.C.2    Dick, L.K.3    Fuhrman, J.4    Griffith, J.5    Holden, P.A.6
  • 10
    • 43049105731 scopus 로고    scopus 로고
    • Relative abundance of Bacteroides spp. in stools and wastewaters as determined by Hierarchical Oligonucleotide Primer Extension (HOPE)
    • Hong, P.Y., Wu, J.H. Liu, W.T. (2008) Relative abundance of Bacteroides spp. in stools and wastewaters as determined by Hierarchical Oligonucleotide Primer Extension (HOPE). Appl Environ Microbiol 74 : 2882 2893.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2882-2893
    • Hong, P.Y.1    Wu, J.H.2    Liu, W.T.3
  • 11
    • 34547597968 scopus 로고    scopus 로고
    • 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: A Bayesian approach
    • DOI 10.1016/j.watres.2007.06.037, PII S0043135407004162
    • Kildare, B.J., Leutenegger, C.M., McSwain, B.S., Bambic, D.G., Rajal, V.B. Wuertz, S. (2007) 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res 41 : 3701 3715. (Pubitemid 47189599)
    • (2007) Water Research , vol.41 , Issue.16 , pp. 3701-3715
    • Kildare, B.J.1    Leutenegger, C.M.2    McSwain, B.S.3    Bambic, D.G.4    Rajal, V.B.5    Wuertz, S.6
  • 13
    • 33745153077 scopus 로고    scopus 로고
    • Development of Bacteroides 16S rRNA gene taqman-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
    • DOI 10.1128/AEM.01036-05
    • Layton, A., McKay, L., Williams, D., Garrett, V., Gentry, R. Sayler, G. (2006) Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl Environ Microbiol 72 : 4214 4224. (Pubitemid 43894889)
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.6 , pp. 4214-4224
    • Layton, A.1    McKay, L.2    Williams, D.3    Garrett, V.4    Gentry, R.5    Sayler, G.6
  • 15
    • 9344247522 scopus 로고    scopus 로고
    • Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
    • Manz, W., Amann, R., Ludwig, W., Vancanneyt, M. Schleifer, K.H. (1996) Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology 142 (Part 5 1097 1106. (Pubitemid 26154919)
    • (1996) Microbiology , vol.142 , Issue.5 , pp. 1097-1106
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Vancanneyt, M.4    Schleifer, K.-H.5
  • 16
    • 34548299909 scopus 로고    scopus 로고
    • Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: Effects of temperature and salinity
    • DOI 10.1007/s00253-007-1048-z
    • Okabe, S. Shimazu, Y. (2007) Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity. Appl Microbiol Biotechnol 76 : 935 944. (Pubitemid 47340928)
    • (2007) Applied Microbiology and Biotechnology , vol.76 , Issue.4 , pp. 935-944
    • Okabe, S.1    Shimazu, Y.2
  • 17
    • 33847312252 scopus 로고    scopus 로고
    • Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater
    • DOI 10.1007/s00253-006-0714-x
    • Okabe, S., Okayama, N., Savichtcheva, O. Ito, T. (2007) Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater. Appl Microbiol Biotechnol 74 : 890 901. (Pubitemid 46318658)
    • (2007) Applied Microbiology and Biotechnology , vol.74 , Issue.4 , pp. 890-901
    • Okabe, S.1    Okayama, N.2    Savichtcheva, O.3    Ito, T.4
  • 18
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T.M., DeLong, E.F. Pace, N.R. (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 173 : 4371 4378.
    • (1991) J Bacteriol , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    Delong, E.F.2    Pace, N.R.3
  • 20
    • 0003688691 scopus 로고
    • US-EPA. EPA-440/5-84/002. Washington, DC, USA. Office of Water Regulations and Standards, Criteria and Standards Division, US-EPA.
    • US-EPA (1986) Ambient Water Quality Criteria for Bacteria - 1986. EPA-440/5-84/002. Washington, DC, USA : Office of Water Regulations and Standards, Criteria and Standards Division, US-EPA.
    • (1986) Ambient Water Quality Criteria for Bacteria - 1986.
  • 21
    • 33947410785 scopus 로고    scopus 로고
    • Detection of Bacteroidales fecal indicators and the zoonotic pathogens E. coli 0157:H7, Salmonella, and Campylobacter in river water
    • DOI 10.1021/es0620989
    • Walters, S.P., Gannon, V.P. Field, K.G. (2007) Detection of Bacteroidales fecal indicators and the zoonotic pathogens E. coli 0157:H7, salmonella, and campylobacter in river water. Environ Sci Technol 41 : 1856 1862. (Pubitemid 46449212)
    • (2007) Environmental Science and Technology , vol.41 , Issue.6 , pp. 1856-1862
    • Walters, S.P.1    Gannon, V.P.J.2    Field, K.G.3
  • 22
    • 34547105830 scopus 로고    scopus 로고
    • Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction
    • Wu, J.H. Liu, W.T. (2007) Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction. Nucleic Acids Res 35 : e82.
    • (2007) Nucleic Acids Res , vol.35 , pp. 82
    • Wu, J.H.1    Liu, W.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.