Population genetics of Manihot esculenta ssp. flabellifolia gives insight into past distribution of xeric vegetation in a postulated forest refugium area in northern Amazonia

Molecular Ecology

Volumn 18, Issue 13, 2009, Pages 2897-2907

  DuputiÉ, Anne ^a   DelÊtre, Marc ^b   De Granville, Jean Jacques ^c   McKey, Doyle ^a  

^a CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

^b TRINITY COLLEGE DUBLIN   (Ireland)

^c INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

Amazonia; Dispersal; French Guiana; Hybridization; Manihot; Refugia

Indexed keywords

PLANT DNA;

ARTICLE; CASSAVA; DNA SEQUENCE; FRENCH GUIANA; GENE FLOW; GENETICS; GENOTYPE; HYBRIDIZATION; MOLECULAR EVOLUTION; POPULATION GENETICS;

DNA, PLANT; EVOLUTION, MOLECULAR; FRENCH GUIANA; GENE FLOW; GENETICS, POPULATION; GENOTYPE; HYBRIDIZATION, GENETIC; MANIHOT; SEQUENCE ANALYSIS, DNA;

MANIHOT; MANIHOT ESCULENTA;

EID: 67649854467     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04231.x     Document Type: Article

References (42)

1. Allem AC (1994) The origin of Manihot esculenta Crantz (Euphorbiaceae). Genetic Resources and Crop Evolution, 41, 133 150.
2. Benjamini Y, Hochberg Y (2000) On the adaptive control of the false discovery rate in multiple testing with independent statistics. Journal of Educational and Behavioural Statistics, 25, 60 83.
3. Bush MB (1994) Amazonian speciation: a necessarily complex model. Journal of Biogeography, 21, 5 17.
4. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis - models and estimation procedures. American Journal of Human Genetics, 3, 233 257.
5. Charles-Dominique P, Blanc P, Larpin D et al 1998) Forest perturbations and biodiversity during the last ten thousand years in French Guiana. Acta Oecologica, 19, 295 302.
6. Charles-Dominique P, Chave J, Dubois MA, de Granville JJ, Riéra B, Vezzoli C (2003) Colonization front of the understorey palm Astrocaryum sciophilum in a pristine rain forest of French Guiana. Global Ecology and Biogeography, 12, 237 248.
7. Chavarriaga-Aguirre P, Maya MM, Bonierbale MW et al 1998) Microsatellites in cassava (Manihot esculenta Crantz): discovery, inheritance and variability. Theoretical and Applied Genetics, 97, 493 501.
8. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001 2014.
9. David P, Pujol B, Viard F, Castella V, Goudet J (2007) Reliable selfing rate estimates from imperfect population genetic data. Molecular Ecology, 16, 2474 2487.
10. Duputié A, David P, Debain C, McKey D (2007) Natural hybridization between a clonally propagated crop, cassava (Manihot esculenta Crantz) and a wild relative in French Guiana. Molecular Ecology, 16, 3025 3038.
11. Dutech C, Maggia L, Tardy C, Joly HI, Jarne P (2003) Tracking a genetic signal of extinction-recolonization events in a Neotropical tree species: Vouacapoua americana Aublet in French Guiana. Evolution, 57, 2753 2764.
12. Dutech C, Joly HI, Jarne P (2004) Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana. Heredity, 92, 69 77.
13. Elias M (2000) Sélection naturelle, sélection humaine, et diversité chez une plante domestiquée propagée de façon végétative: le cas de la culture du manioc par les Indiens Makushi du Guyana. PhD Thesis, Université Montpellier II, Montpellier, France.
14. Elias M, McKey D (2000) The unmanaged reproductive ecology of domesticated plants in traditional agroecosystems: an example involving cassava and a call for data. Acta Oecologica, 21, 223 230.
15. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theoretical and Applied Genetics, 92, 832 839.
16. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software Structure: a simulation study. Molecular Ecology, 14, 2611 2620.
17. Gond V, Bernard JZ, Brognoli C et al in press) Analyse multi-échelles de la caractérisation des écosystèmes forestiers guyanais et des impacts humains à partir de la télédétection spatiale. In : Actes du Colloque Ecosystèmes Forestiers des Caraïbes, Martinique, December 5th-10th, 2005. Karthala Editions, Paris. http://www.cirad.fr/ur/ressourcesforestieres/ content/download/8/51/4924/file/Article%20bouclier%20VG.pdf (accessed May 6th, 2009).
18. Goudet J (1995) fstat (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485 486.
19. de Granville JJ (1982) Rain forest and xeric flora refuges in French Guiana. In : Biological Diversification in the Tropics (ed. Prance G pp. 137 158. Columbia University Press, New York.
20. de Granville JJ, Cremers G, Hoff M (1993) L'endémisme en Guyane française. In : Phytogéographie Tropicale - Réalités et Perspectives (eds Guillaumet J, Belin M, Puig H). ORSTOM, Paris, France.
21. Haffer J (1969) Speciation in Amazonian forest birds. Science, 165, 131 137.
22. van der Hammen T, Hooghiemstra H (2000) Neogene and Quaternary history of vegetation, climate, and plant diversity in Amazonia. Quaternary Science Reviews, 19, 725 742.
23. Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907 913.
24. Langella O (1999) Populations version 1.2.30. http://bioinformatics.org/ ∼tryphon/populations/.
25. Ledru MP (2001) Late Holocene rainforest disturbance in French Guiana. Review of Palaeobotany and Palynology, 115, 161 176.
26. Luikart G, Allendorf FW, Cornuet JM, Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity, 89, 238 247.
27. Mayle FE, Beerling DJ, William D, Bush MB (2004) Responses of Amazonian ecosystems to climatic and atmospheric carbon dioxide changes since the last glacial maximum. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 499 514.
28. Mba REC, Stephenson P, Edwards K et al 2001) Simple sequence repeat (SSR) markers survey of the cassava (Manihot esculenta Crantz) genome: towards an SSR-based molecular genetic map of cassava. Theoretical and Applied Genetics, 102, 21 31.
29. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
30. Noonan BP, Gaucher P (2005) Phylogeography and demography of Guianan harlequin toads (Atelopus): diversification within a refuge. Molecular Ecology, 14, 3017 3031.
31. Olsen KM, Schaal BA (1999) Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proceedings of the National Academy of Sciences, USA, 96, 5586 5591.
32. Pennington RT, Lewis GP, Ratter JA (2006) Neotropical Savannas and Dry Forests: Plant Diversity, Biogeography and Conservation (eds Pennington RT, Lewis G, Ratter JA). CRC Press, New York.
33. Pennington RT, Prado DE, Pendry CA (2000) Neotropical seasonally dry forests and Quaternary vegetation changes. Journal of Biogeography, 27, 261 273.
34. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
35. Pujol B, Gigot G, Laurent G et al 2002) Germination ecology of cassava (Manihot esculenta Crantz, Euphorbiaceae) in traditional agroecosystems: seed and seedling biology of a vegetatively propagated domesticated plant. Economic Botany, 56, 366 379.
36. Raymond M, Rousset F (1995) GenePop Version 1.2. Population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248 249.
37. Roubik DW (1989) Ecology and Natural History of Tropical Bees. Cambridge University Press, New York.
38. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219 1228.
39. Tardy C (1998) Paléoincendies naturels, feux anthropiques et environnements forestiers de Guyane Française du Tardiglaciaire à l'Holocène récent - Approches chronologique et anthracologique. PhD Thesis. Université Montpellier II, Montpellier, France.
40. Tissot C, Djuwansah MR, Marius C (1988) Evolution de la mangrove en Guyane au cours de l'Holocène: étude palynologique. Symposium de l'Association des Palynologues de Langue Française, Vol. 25, pp. 125 137. Travaux de la Section Scientifique et Technique de l'Institut Français de Pondichéry, Pondicherry.
41. Verhoeven KJF, Simonsen KL, McIntyre LM (2005) Implementing false discovery rate control: increasing your power. Oikos, 108, 643 647.
42. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.