Marinobacterium nitratireducens sp. nov. and Marinobacterium sediminicola sp. nov., isolated from marine sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 5, 2009, Pages 1173-1178

  Huo, Ying Yi ^a   Xu, Xue Wei ^b   Cao, Yi ^a   Wang, Chun Sheng ^b   Zhu, Xu Fen ^a   Oren, Aharon ^c   Wu, Min ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b Ministry of Natural Resources of the People's Republic of China   (China)

^c HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN; CARBENICILLIN; CEFOTAXIME; CEFOXITIN; CEFTRIAXONE; CHLORAMPHENICOL; CYTOSINE; ERYTHROMYCIN; GUANINE; KANAMYCIN; NEOMYCIN; NITROFURANTOIN; PENICILLIN G; POLYMYXIN B; RIFAMPICIN; RNA 16S; STREPTOMYCIN; TETRACYCLINE; TOBRAMYCIN; UBIQUINONE; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA; SEA WATER;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA CONTENT; GENOTYPE; GRAM NEGATIVE AEROBIC RODS AND COCCI; LIPID COMPOSITION; MARINOBACTERIUM NITRATIREDUCENS; MARINOBACTERIUM SEDIMINICOLA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEDIMENT; SEQUENCE ANALYSIS; TYPE STRAIN; ALTEROMONADACEAE; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

MARINOBACTERIUM; MARINOBACTERIUM STANIERI; NEGIBACTERIA;

ALTEROMONADACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GENOTYPE; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67649787260     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005751-0     Document Type: Article

References (26)

1. Baumann, P., Bowditch, R. D., Baumann, L. & Beaman, B. (1983). Taxonomy of marine Pseudomonas species: P. stanieri sp. nov.; P. perfectomarina sp. nov., nom. rev.; P. nautica; and P. doudoroffii. Int J Syst Bacteriol 33, 857-865.
2. Bowditch, R. D., Baumann, L. & Baumann, P. (1984). Description of Oceanospirillum kriegii sp. nov. and O. jannaschii sp. nov. and assignment of two species of Alteromonas to this genus as O. commune comb. nov. and O. vagum comb. nov. Curr Microbiol 10, 221-230.
3. Chang, H.-W., Nam, Y.-D., Kwon, H.-Y., Park, J. R., Lee, J.-S., Yoon, J.-H., An, K.-G. & Bae, J.-W. (2007). Marinobacterium halophilum sp. nov., a marine bacterium isolated from the Yellow Sea. Int J Syst Evol Microbiol 57, 77-80.
4. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
6. Euzéby, J. P. & Tindall, B. J. (2004). Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an opinion. Int J Syst Evol Microbiol 54, 293-301.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. González, J. M., Mayer, F., Moran, M. A., Hodson, R. E. & Whitman, W. B. (1997). Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., two marine bacteria from a lignin-rich pulp mill waste enrichment community. Int J Syst Bacteriol 47, 369-376.
10. Huo, Y.-Y., Wang, C.-S., Yang, J.-Y., Wu, M. & Xu, X.-W. (2008). Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea. Int J Syst Evol Microbiol 58, 2885-2889.
11. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
12. Kim, H., Choo, Y.-J., Song, J., Lee, J.-S., Lee, K. C. & Cho, J.-C. (2007). Marinobacterium litorale sp. nov. in the order Oceanospirillales. Int J Syst Evol Microbiol 57, 1659-1662.
13. Kim, Y.-G., Jin, Y.-A., Hwang, C. Y. & Cho, B. C. (2008). Marinobacterium rhizophilum sp. nov., isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica. Int J Syst Evol Microbiol 58, 164-167.
14. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
15. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
16. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
17. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
18. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
19. Mata, J. A., Martínez-Cánovas, J., Quesada, E. & Béjar, V. (2002). A detailed phenotypic characterisation of the type strains of Halomonas species. Syst Appl Microbiol 25, 360-375.
20. Mikhailov, V. V., Romanenko, L. A. & Ivanova, E. P. (2006). The genus Alteromonas and related proteobacteria. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 6, pp. 597-645. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Satomi, M., Kimura, B., Hamada, T., Harayama, S. & Fujii, T. (2002). Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov. Int J Syst Evol Microbiol 52, 739-747.
23. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
24. Xu, X.-W., Wu, Y.-H., Zhou, Z., Wang, C.-S., Zhou, Y.-G., Zhang, H.-B., Wang, Y. & Wu, M. (2007). Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China. Int J Syst Evol Microbiol 57, 1619-1624.
25. Xu, X.-W., Wu, Y.-H., Wang, C.-S., Yang, J.-Y., Oren, A. & Wu, M. (2008). Marinobacter pelagius sp. nov., a moderately halophilic bacterium. Int J Syst Evol Microbiol 58, 637-640.
26. ZoBell, C. E. (1941). Studies on marine bacteria. I. The cultural requirements of heterotrophic aerobes. J Mar Res 4, 42-75.