An algorithm for the typing of enteroviruses and correlation to serotyping by viral neutralization

Journal of Clinical Virology

Volumn 45, Issue 4, 2009, Pages 334-340

  Kiang, David ^a,b   Newbower, Elly Chou ^a,b   Yeh, Elaine ^a   Wold, Lauren ^a   Chen, Lily ^b   Schnurr, David P ^a  

^a VIRAL AND RICKETTSIAL DISEASE LABORATORY   (United States)

^b SAN FRANCISCO STATE UNIVERSITY   (United States)

Author keywords

Enterovirus; Genotyping; Immunofluorescence; Phylogenetics

Indexed keywords

ANTISERUM; MONOCLONAL ANTIBODY; PROTEIN VP1; PROTEIN VP3;

ALGORITHM; ANIMAL CELL; ANIMAL CELL CULTURE; ARTICLE; CONTROLLED STUDY; DATA BASE; DNA SEQUENCE; ENTEROVIRUS; GENOTYPE; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; IMMUNOFLUORESCENCE TEST; INOCULATION; INTERMETHOD COMPARISON; NONHUMAN; NUCLEIC ACID AMPLIFICATION; NUCLEIC ACID ANALYSIS; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SEROTYPING; VIRUS ISOLATION; VIRUS NEUTRALIZATION; VIRUS TYPING;

ALGORITHMS; ANTIGENS, VIRAL; CLUSTER ANALYSIS; ENTEROVIRUS; FLUORESCENT ANTIBODY TECHNIQUE, DIRECT; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; NEUTRALIZATION TESTS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SEROTYPING;

EID: 67649786539     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2009.05.035     Document Type: Article

References (29)

1. Hyypia T., Hovi T., Knowles N.J., and Stanway G. Classification of enteroviruses based on molecular and biological properties. J Gen Virol 78 Part 1 (1997) 1-11
2. Fauquet C., International Committee on Taxonomy of Viruses, International Union of Microbiological Societies, and Virology Division. Virus taxonomy classification and nomenclature of viruses: eighth report of the International Committee on the Taxonomy of Viruses (2005), Elsevier Academic Press, San Diego, CA
3. Oberste M.S., Maher K., Michele S.M., Belliot G., Uddin M., and Pallansch M.A. Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A. J Gen Virol 86 (2005) 445-451
4. Oberste M.S., Michele S.M., Maher K., Schnurr D., Cisterna D., Junttila N., et al. Molecular identification and characterization of two proposed new enterovirus serotypes, EV74 and EV75. J Gen Virol 85 (2004) 3205-3212
5. Norder H., Bjerregaard L., Magnius L., Lina B., Aymard M., and Chomel J.J. Sequencing of 'untypable' enteroviruses reveals two new types, EV-77 and EV-78, within human enterovirus type B and substitutions in the BC loop of the VP1 protein for known types. J Gen Virol 84 (2003) 827-836
6. Brown B., Oberste M.S., Maher K., and Pallansch M.A. Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region. J Virol 77 (2003) 8973-8984
7. Leitch E.C., Harvala H., Robertson I., Ubillos I., Templeton K., and Simmonds P. Direct identification of human enterovirus serotypes in cerebrospinal fluid by amplification and sequencing of the VP1 region. J Clin Virol 44 (2009) 119-124
8. Khetsuriani N., Lamonte-Fowlkes A., Oberst S., and Pallansch M.A. Enterovirus surveillance-United States, 1970-2005. MMWR Surveill Summ 55 (2006) 1-20
9. Pallansch M., and Oberste M.S. Molecular detection and characterization of human enteroviruses. In: Matsumori A. (Ed). Cardiomyopathies and heart failure: biomolecular, infectious and immune mechanisms (2003), Kluwer Academic Publishers, Boston, MA 245-257
10. Muir P., Kammerer U., Korn K., Mulders M.N., Poyry T., Weissbrich B., et al. Molecular typing of enteroviruses: current status and future requirements. The European Union Concerted Action on Virus Meningitis and Encephalitis. Clin Microbiol Rev 11 (1998) 202-227
11. Kares S., Lonnrot M., Vuorinen P., Oikarinen S., Taurianen S., and Hyoty H. Real-time PCR for rapid diagnosis of entero- and rhinovirus infections using LightCycler. J Clin Virol 29 (2004) 99-104
12. Nix W.A., Oberste M.S., and Pallansch M.A. Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens. J Clin Microbiol 44 (2006) 2698-2704
13. Tavakoli N.P., Wang H., Nattanmai S., Dupuis M., Fusco H., and Hull R. Detection and typing of enteroviruses from CSF specimens from patients diagnosed with meningitis/encephalitis. J Clin Virol (2008)
14. Bingjun T., Yoshida H., Yan W., Lin L., Tsuji T., Shimizu H., et al. Molecular typing and epidemiology of non-polio enteroviruses isolated from Yunnan Province, the People's Republic of China. J Med Virol 80 (2008) 670-679
15. Nasri D., Bouslama L., Pillet S., Bourlet T., Aouni M., and Pozzetto B. Basic rationale, current methods and future directions for molecular typing of human enterovirus. Expert Rev Mol Diagn 7 (2007) 419-434
16. Grandien M., Forsgren M., and Ehrnst A. Enteroviruses. In: Lennette E.H., Lennette D.A., and Lennette E.T. (Eds). Diagnostic procedures for viral, rickettsial, and chlamydial infections (1995), American Public Health Association, Washington, DC 279-297
17. Oberste M.S., Maher K., Williams A.J., Dybdahl-Sissoko N., Brown B.A., Gookin M.S., et al. Species-specific RT-PCR amplification of human enteroviruses: a tool for rapid species identification of uncharacterized enteroviruses. J Gen Virol 87 (2006) 119-128
18. Khetsuriani N., LaMonte A., Stockman L., Oberst S., Pallansch M., and Malek M. Enterovirus surveillance-United States, 2002-2004. Morb Mortal Wkly Rep 55 (2006) 153-156
19. Egbertson S.H., and Mayo D.R. A microneutralization test for the identification of enterovirus isolates. J Virol Methods 14 (1986) 305-307
20. Bendig J., and Earl P. The Lim Benyesh-Melnick antiserum pools for serotyping human enterovirus cell culture isolates-still useful, but may fail to identify current strains of echovirus 18. J Virol Methods 127 (2005) 96-99
21. Kubo H., Iritani N., and Seto Y. Molecular classification of enteroviruses not identified by neutralization tests. Emerg Infect Dis 8 (2002) 298-304
22. Rigonan A.S., Mann L., and Chonmaitree T. Use of monoclonal antibodies to identify serotypes of enterovirus isolates. J Clin Microbiol 36 (1998) 1877-1881
23. Bastis D., Simonet S., Patterson M.A., and Neill S. Identification of enteroviruses by indirect immunofluorescence using monoclonal antibodies. Clin Diagn Virol 3 (1995) 83-93
24. Brown B.A., Maher K., Flemister M.R., Naraghi-Arani P., Uddin M., Oberste M.S., et al. Resolving ambiguities in genetic typing of human enterovirus species C clinical isolates and identification of enterovirus 96, 99 and 102. J Gen Virol (2009)
25. Oberste M.S., Maher K., Kilpatrick D.R., and Pallansch M.A. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J Virol 73 (1999) 1941-1948
26. Oberste M.S., Maher K., Kilpatrick D.R., Flemister M.R., Brown B.A., and Pallansch M.A. Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol 37 (1999) 1288-1293
27. Iturriza-Gomara M., Megson B., and Gray J. Molecular detection and characterization of human enteroviruses directly from clinical samples using RT-PCR and DNA sequencing. J Med Virol 78 (2006) 243-253
28. Ormsbee R.A., and Melnick J.L. Biologic and serologic characteristics of ECHO viruses from West Virginia. J Immunol 79 (1957) 384-392
29. Simmonds P., and Welch J. Frequency and dynamics of recombination within different species of human enteroviruses. J Virol 80 (2006) 483-493