Tracking the cell hierarchy in the human intestine using biochemical signatures derived by mid-infrared microspectroscopy

Stem Cell Research

Volumn 3, Issue 1, 2009, Pages 15-27

  Walsh, Michael J ^a   Hammiche, Azzedine ^b   Fellous, Tariq G ^c   Nicholson, James M ^d   Cotte, Marine ^e   Susini, Jean ^e   Fullwood, Nigel J ^a   Martin Hirsch, Pierre L ^f   Alison, Malcolm R ^c   Martin, Francis L ^a  

^a LANCASTER UNIVERSITY   (United Kingdom)

^b LANCASTER UNIVERSITY   (United Kingdom)

^c QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

^d DARESBURY LABORATORY   (United Kingdom)

^e EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^f LANCASHIRE TEACHING HOSPITALS NHS FOUNDATION TRUST   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL TYPE; CONTROLLED STUDY; HUMAN; HUMAN TISSUE; INFRARED SPECTROSCOPY; INTESTINE CELL; INTESTINE CRYPT; PANETH CELL; PRIORITY JOURNAL; SYNCHROTRON;

DISCRIMINANT ANALYSIS; DNA; HUMANS; INTESTINE, LARGE; INTESTINE, SMALL; MODELS, BIOLOGICAL; PRINCIPAL COMPONENT ANALYSIS; RNA; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STEM CELLS; SYNCHROTRONS;

EID: 67649779817     PISSN: 18735061     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scr.2009.02.003     Document Type: Article

References (45)

1. Ami D., Neri T., Natalello A., Mereghetti P., Doglia S.M., Zanoni M., Zuccotti M., Garagna S., and Redi C.A. Embryonic stem cell differentiation studied by FT-IR spectroscopy. Biochim. Biophys. Acta-Mol. Cell Res. 1783 (2008) 98-106
2. Barker N., and Clevers H. Tracking down the stem cells of the intestine: strategies to identify adult stem cells. Gastroenterology 133 (2007) 1755-1760
3. Barker N., van Es J.H., Kuipers J., Kujala P., van den Born M., Cozijnsen M., Haegebarth A., Korving J., Begthel H., Peters P.J., and Clevers H. Identification of stem cells in small intestine and colon by marker gene Lgr5. Nature 449 (2007) 1003-1007
4. Bentley A.J., Nakamura T., Hammiche A., Pollock H.M., Martin F.L., Kinoshita S., and Fullwood N.J. Characterization of human corneal stem cells by synchrotron infrared micro-spectroscopy. Mol. Vis. 13 (2007) 237-242
5. Bjerknes M., and Cheng H. The stem-cell zone of the small intestinal epithelium. IV. Effects of resecting 30% of the small intestine. Am. J. Anat. 160 (1981) 93-103
6. Boydston-White S., Gopen T., Houser S., Bargonetti J., and Diem M. Infrared spectroscopy of human tissue. V. Infrared spectroscopic studies of myeloid leukemia (ML-1) cells at different phases of the cell cycle. Biospectroscopy 5 (1999) 219-227
7. Chiriboga L., Yee H., and Diem M. Infrared spectroscopy of human cells and tissue. Part VII: FT-IR microspectroscopy of DNase- and RNase-treated normal, cirrhotic, and neoplastic liver tissue. Appl. Spectrosc. 54 (2000) 480-485
8. Cotsarelis G., Sun T.T., and Lavker R.M. Label-retaining cells reside in the bulge area of pilosebaceous unit: implications for follicular stem cells, hair cycle, and skin carcinogenesis. Cell 61 (1990) 1329-1337
9. Dekaney C.M., Rodriguez J.M., Graul M.C., and Henning S.J. Isolation and characterization of a putative intestinal stem cell fraction from mouse jejunum. Gastroenterology 129 (2005) 1567-1580
10. Dumas P., and Miller L. The use of synchrotron infrared microspectroscopy in biological and biomedical investigations. Vib. Spectrosc. 32 (2003) 3-21
11. Escaffit F., Perreault N., Jean D., Francoeur C., Herring E., Rancourt C., Rivard N., Vachon P.H., Pare F., Boucher M.P., Auclair J., and Beaulieu J.F. Repressed E-cadherin expression in the lower crypt of human small intestine: a cell marker of functional relevance. Exp. Cell Res. 302 (2005) 206-220
12. Fevr T., Robine S., Louvard D., and Huelsken J. Wnt/β-catenin is essential for intestinal homeostasis and maintenance of intestinal stem cells. Mol. Cell Biol. 27 (2007) 7551-7559
13. German M.J., Hammiche A., Ragavan N., Tobin M.J., Cooper L.J., Matanhelia S.S., Hindley A.C., Nicholson C.M., Fullwood N.J., Pollock H.M., and Martin F.L. Infrared spectroscopy with multivariate analysis potentially facilitates the segregation of different types of prostate cell. Biophys. J. 90 (2006) 3783-3795
14. German M.J., Pollock H.M., Zhao B., Tobin M.J., Hammiche A., Bentley A., Cooper L.J., Martin F.L., and Fullwood N.J. Characterization of putative stem cell populations in the cornea using synchrotron infrared microspectroscopy. Invest. Ophthalmol. Vis. Sci. 47 (2006) 2417-2421
15. Grude O., Hammiche A., Pollock H., Bentley A.J., Walsh M.J., Martin F.L., and Fullwood N.J. Near-field photothermal microspectroscopy for adult stem-cell identification and characterization. J. Microsc. 228 (2007) 366-372
16. Hammiche A., German M.J., Hewitt R., Pollock H.M., and Martin F.L. Monitoring cell cycle distributions in MCF-7 cells using near-field photothermal microspectroscopy. Biophys. J. 88 (2005) 3699-3706
17. Kayahara T., Sawada M., Takaishi S., Fukui H., Seno H., Fukuzawa H., Suzuki K., Hiai H., Kageyama R., Okano H., and Chiba T. Candidate markers for stem and early progenitor cells, Musashi-1 and Hes1, are expressed in crypt base columnar cells of mouse small intestine. FEBS Lett. 535 (2003) 131-135
18. Kelly J.G., Singh M.N., Stringfellow H.F., Walsh M.J., Nicholson J.M., Bahrami F., Ashton K.M., Pitt M.A., Martin-Hirsch P.L., and Martin F.L. Derivation of a subtype-specific biochemical signature of endometrial carcinoma using synchrotron-based Fourier-transform infrared microspectroscopy. Cancer Lett. 274 (2009) 208-217
19. Kosinski C., Li V.S., Chan A.S., Zhang J., Ho C., Tsui W.Y., Chan T.L., Mifflin R.C., Powell D.W., Yuen S.T., Leung S.Y., and Chen X. Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors. Proc. Natl. Acad. Sci. USA 104 (2007) 15418-15423
20. Krafft C., Salzer R., Seitz S., Ern C., and Schieker M. Differentiation of individual human mesenchymal stem cells probed by FTIR microscopic imaging. Analyst 132 (2007) 647-653
21. Leedham S.J., Thliveris A.T., Halberg R.B., Newton M.A., and Wright N.A. Gastrointestinal stem cells and cancer: bridging the molecular gap. Stem Cell Rev. 1 (2005) 233-241
22. Marshman E., Booth C., and Potten C.S. The intestinal epithelial stem cell. Bioessays 24 (2002) 91-98
23. Martin F.L., German M.J., Wit E., Fearn T., Ragavan N., and Pollock H.M. Identifying variables responsible for clustering in discriminant analysis of data from infrared microspectroscopy of a biological sample. J. Comput. Biol. 14 (2007) 1176-1184
24. Matthäus C., Boydston-White S., Miljković M., Romeo M., and Diem M. Raman and infrared microspectral imaging of mitotic cells. Appl. Spectrosc. 60 (2006) 1-8
25. May R., Riehl T.E., Hunt C., Sureban S.M., Anant S., and Houchen C.W. Identification of a novel putative gastrointestinal stem cell and adenoma stem cell marker, doublecortin and CaM kinase-like-1, following radiation injury and in adenomatous polyposis coli/multiple intestinal neoplasia mice. Stem Cells 26 (2008) 630-637
26. Mordechai S., Sahu R.K., Hammody Z., Mark S., Kantarovich K., Guterman H., Podshyvalov A., Goldstein J., and Argov S. Possible common biomarkers from FTIR microspectroscopy of cervical cancer and melanoma. J. Microsc. 215 (2004) 86-91
27. Nishimura S., Wakabayashi N., Toyoda K., Kashima K., and Mitsufuji S. Expression of Musashi-1 in human normal colon crypt cells: a possible stem cell marker of human colon epithelium. Dig. Dis. Sci. 48 (2003) 1523-1529
28. Pinto D., and Clevers H. Wnt control of stem cells and differentiation in the intestinal epithelium. Exp. Cell Res. 306 (2005) 357-363
29. Potten C.S., Owen G., and Booth D. Intestinal stem cells protect their genome by selective segregation of template DNA strands. J. Cell Sci. 115 (2002) 2381-2388
30. Potten C.S., Booth C., Tudor G.L., Booth D., Brady G., Hurley P., Ashton G., Clarke R., Sakakibara S., and Okano H. Identification of a putative intestinal stem cell and early lineage marker; Musashi-1. Differentiation 71 (2003) 28-41
31. Sancho E., Batlle E., and Clevers H. Line and let die in the intestinal epithelium. Curr. Opin. Cell Bio. 15 (2003) 763-770
32. Sangiorgi E., and Capecchi M.R. Bmi1 is expressed in vivo in intestinal stem cells. Nat. Genet. 40 (2008) 915-920
33. Scoville D.H., Sato T., He X.C., and Li L. Current view: intestinal stem cells and signaling. Gastroenterology 134 (2008) 849-864
34. Tobin M.J., Chesters M.A., Chalmers J.M., Rutten F.J., Fisher S.E., Symonds I.M., Hitchcock A., Allibone R., and Dias-Gunasekara S. Infrared microscopy of epithelial cancer cells in whole tissues and in tissue culture, using synchrotron radiation. Faraday Discuss. 126 (2004) 27-39 discussion 77-92
35. Van der Flier L.G., Sabates-Bellver J., Oving I., Haegebarth A., De Palo M., Anti M., Van Gijn M.E., Suijkerbuijk S., Van de Wetering M., Marra G., and Clevers H. The Intestinal Wnt/TCF Signature. Gastroenterology 132 (2007) 628-632
36. van de Wetering M., Sancho E., Verweij C., de Lau W., Oving I., Hurlstone A., van der Horn K., Batlle E., Coudreuse D., Haramis A.P., Tjon-Pon-Fong M., Moerer P., van den Born M., Soete G., Pals S., Eilers M., Medema R., and Clevers H. The β-catenin/TCF-4 complex imposes a crypt progenitor phenotype on colorectal cancer cells. Cell 111 (2002) 241-250
37. van Es J.H., Jay P., Gregorieff A., van Gijn M.E., Jonkheer S., Hatzis P., Thiele A., van den Born M., Begthel H., Brabletz T., Taketo M.M., and Clevers H. Wnt signalling induces maturation of Paneth cells in intestinal crypts. Nat. Cell Biol. 7 (2005) 381-386
38. Walsh M.J., German M.J., Singh M., Pollock H.M., Hammiche A., Kyrgiou M., Stringfellow H.F., Paraskevaidis E., Martin-Hirsch P.L., and Martin F.L. IR microspectroscopy: potential applications in cervical cancer screening. Cancer Lett. 246 (2007) 1-11
39. Walsh M.J., Singh M.N., Pollock H.M., Cooper L.J., German M.J., Stringfellow H.F., Fullwood N.J., Paraskevaidis E., Martin-Hirsch P.L., and Martin F.L. ATR microspectroscopy with multivariate analysis segregates grades of exfoliative cervical cytology. Biochem. Biophys. Res. Commun. 352 (2007) 213-219
40. Walsh M.J., Singh M.N., Stringfellow H.F., Pollock H.M., Hammiche A., Grude O., Fullwood N.J., Pitt M.A., Martin-Hirsch P.L., and Martin F.L. FTIR microspectroscopy coupled with two-class discrimination segregates markers responsible for inter- and intra-category variance in exfoliative cervical cytology. Biomark Insights 3 (2008) 179-189
41. - modifications as a marker of the putative stem cell region of human intestinal crypts. Stem Cells 26 (2008) 108-118
42. Walsh M.J., Bruce S.W., Pant K., Carmichael P.L., Scott A.D., and Martin F.L. Discrimination of a transformation phenotype in Syrian golden hamster embryo (SHE) cells using ATR-FTIR spectroscopy. Toxicology 258 (2009) 33-38
43. Wong P.T., Wong R.K., Caputo T.A., Godwin T.A., and Rigas B. Infrared spectroscopy of exfoliated human cervical cells: evidence of extensive structural changes during carcinogenesis. Proc. Natl. Acad. Sci. USA 88 (1991) 10988-10992
44. Yen T.H., and Wright N.A. The gastrointestinal tract stem cell niche. Stem Cell Rev. 2 (2006) 203-212
45. Zhang J., Niu C., Ye L., Huang H., He X., Tong W.G., Ross J., Haug J., Johnson T., Feng J.Q., Harris S., Wiedemann L.M., Mishina Y., and Li L. Identification of the haematopoietic stem cell niche and control of the niche size. Nature 425 (2003) 836-841