Insight into the protein and solvent contributions to the reduction potentials of [4Fe-4S]2+/+ clusters: Crystal structures of the Allochromatium vinosum ferredoxin variants C57A and V13G and the homologous Escherichia coli ferredoxin

Journal of Biological Inorganic Chemistry

Volumn 14, Issue 5, 2009, Pages 783-799

  Saridakis, Emmanuel ^a   Giastas, Petros ^a,f   Efthymiou, Georgios ^b   Thoma, Vladimiros ^b   Moulis, Jean Marc ^c,d,e   Kyritsis, Panayotis ^b   Mavridis, Irene M ^a  

^a INSTITUTE OF NANOSCIENCE AND NANOTECHNOLOGY   (Greece)

^b UNIVERSITY OF ATHENS   (Greece)

^c CEA GRENOBLE   (France)

^d LCBM   (France)

^e UNIV GRENOBLE ALPES   (France)

^f HELLENIC PASTEUR INSTITUTE   (Greece)

Author keywords

Allochromatium vinosum; Crystal structure; Electrochemistry; Escherichia coli; Ferredoxin

Indexed keywords

FERREDOXIN; PROTEIN; SOLVENT; SULFUR; THIOL; WATER;

ACCURACY; ALLOCHROMATIUM VINOSUM; ARTICLE; CRYSTAL STRUCTURE; CYCLIC POTENTIOMETRY; ELECTROCHEMISTRY; ESCHERICHIA COLI; EXPOSURE; MOLECULAR INTERACTION; NONHUMAN; PHOTOTROPHIC BACTERIUM; PRIORITY JOURNAL; REDUCTION; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

ALLOCHROMATIUM VINOSUM; ESCHERICHIA COLI;

EID: 67649553352     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-009-0492-x     Document Type: Article

References (64)

1. I Bertini 1997 J Biol Inorg Chem 2 108
2. DC Johnson DR Dean AD Smith MK Johnson 2005 Annu Rev Biochem 74 247 281
3. CC Page CC Moser X Chen PL Dutton 1999 Nature 402 47 52
4. RA Marcus N Sutin 1985 Biochim Biophys Acta 811 265 322
5. HB Gray JR Winkler 1996 Annu Rev Biochem 65 537 561
6. P Giastas N Pinotsis G Efthymiou M Wilmanns P Kyritsis J-M Moulis IM Mavridis 2006 J Biol Inorg Chem 11 445 458
7. AF Miller 2008 Acc Chem Res 41 501 510
8. WN Lanzilotta LC Seefeldt 1997 Biochemistry 36 12976 12983
9. CW Carter J Kraut ST Freer RA Alden LC Sieker ET Adman LH Jensen 1972 Proc Natl Acad Sci USA 69 3526 3529
10. J-M Moulis M Lutz J Gaillard L Noodleman 1988 Biochemistry 27 8712 8719
11. G Backes Y Mino TM Loehr TE Meyer MA Cusanovich WV Sweeney ET Adman J Sanders-Loehr 1991 J Am Chem Soc 113 2055 2064
12. A Dey EJ Francis MWW Adams E Babini Y Takahashi K Fukuyama KO Hodgson B Hedman EI Solomon 2007 Science 318 1464 1468
13. H Beinert 2000 J Biol Inorg Chem 5 2 15
14. H Sticht P Rosch 1998 Progr Biophys Mol Biol 70 95 136
15. J Meyer 2008 J Biol Inorg Chem 13 157 170
16. Sieker LC, Adman ET (2001) Handbook of metalloproteins-the 2[4Fe-4S] ferredoxins. Wiley, Chichester
17. J-M Moulis 1996 Biochim Biophys Acta 1308 12 14
18. P Kyritsis OM Hatzfeld TA Link J-M Moulis 1998 J Biol Chem 273 15404 15411
19. R Bachofen DI Arnon 1966 Biochim Biophys Acta 120 259 265
20. MC Evans BB Buchanan DI Arnon 1966 Proc Natl Acad Sci USA 55 928 934
21. ET Smith BA Feinberg 1990 J Biol Chem 265 14371 14376
22. HS Gao-Sheridan HR Pershad FA Armstrong BK Burgess 1998 J Biol Chem 273 5514 5519
23. P Kyritsis R Kümmerle JG Huber J Gaillard B Guigliarelli C Popescu E Münck J-M Moulis 1999 Biochemistry 38 6335 6345
24. M Boll G Fuchs G Tilley FA Armstrong DJ Lowe 2000 Biochemistry 39 4929 4938
25. Matsubara H, Saeki K (1992) In: Cammack R, Sykes AG (eds) Advances in inorganic chemistry. Academic Press, San Diego, pp 223-280
26. JM Moulis V Davasse F Dejesus 1994 Biometals 7 272 278
27. R Kümmerle J Gaillard P Kyritsis J-M Moulis 2001 J Biol Inorg Chem 6 446 451
28. I Quinkal P Kyritsis T Kohzuma SC Im AG Sykes J-M Moulis 1996 Biochim Biophys Acta 1295 201 208
29. J-M Moulis LC Sieker KS Wilson Z Dauter 1996 Protein Sci 5 1765 1775
30. GN Murshudov A Lebedev AA Vagin KS Wilson EJ Dodson 1999 Acta Crystallogr D 55 247 255
31. A Perrakis M Harkiolaki KS Wilson VS Lamzin 2001 Acta Crystallogr D 57 1445 1450
32. TA Jones JY Zou SW Cowan M Kjeldgaard 1991 Acta Crystallogr A 47 110 119
33. GM Sheldrick TR Schneider 1997 Methods Enzymol 277 319 343
34. Z Otwinowski W Minor 1997 Methods Enzymol 276 307 326
35. Collaborative Computational Project No.4 1994 Acta Crystallogr D 50 760 763
36. GS French KS Wilson 1978 Acta Crystallogr A 34 517 525
37. AJ McCoy RW Grosse-Kunstleve LC Storoni RJ Read 2005 Acta Crystallogr D 61 458 466
38. D Britton 1972 Acta Crystallogr A 28 296 297
39. TO Yeates 1997 Methods Enzymol 276 344 358
40. RA Engh R Huber 1991 Acta Crystallogr A 47 392 400
41. RA Laskowski MW MacArthur DS Moss JM Thornton 1993 J Appl Crystallogr 26 283 291
42. DeLano WL (2008) The PyMOL molecular graphics system. DeLano Scientific LLC, Palo Alto. http://www.pymol.org
43. A Nicholls K Sharp B Honig 1991 Proteins Struct Funct Genet 11 281 296
44. WR Hagen 1989 Eur J Biochem 182 523 530
45. Bard AZ, Faulkner LR (2001) Electrochemical methods: fundamentals and applications. Wiley, Chichester
46. RT Salmon FM Hawkridge 1980 J Electroanal Chem 112 253 264
47. RS Nicholson 1965 Anal Chem 37 1351 1355
48. Z Dauter KS Wilson LC Sieker J Meyer J-M Moulis 1997 Biochemistry 36 16065 16073
49. C van Dijk T van Eijs JW van Leeuwen C Veeger 1984 FEBS Lett 166 76 80
50. FA Armstrong PA Cox HAO Hill VJ Lowe BN Oliver 1987 J Electroanal Chem 217 331 366
51. W Kabsch 1976 Acta Crystallogr A 32 922 923
52. K Fukuyama T Okada Y Kakuta Y Takahashi 2002 J Mol Biol 315 1155 1166
53. E Parisini F Capozzi P Lubini V Lamzin C Luchinat GM Sheldrick 1999 Acta Crystallogr D 55 1773 1784
54. ET Adman KD Watenpaugh LH Jensen 1975 Proc Natl Acad Sci USA 72 4854 4858
55. KS Chen YS Jung CA Bonagura GJ Tilley GS Prasad V Sridhar FA Armstrong CD Stout BK Burgess 2002 J Biol Chem 277 5603 5610
56. K Brettel W Leibl 2001 Biochim Biophys Acta 1507 100 114
57. D Barthelme U Scheele S Dinkelaker A Janoschka F MacMillan SV Albers AJM Driessen MS Stagni E Bill W Meyer-Klaucke V Schunemann R Tampe 2007 J Biol Chem 282 14598 14607
58. A Karcher A Schele KP Hopfner 2008 J Biol Chem 283 7962 7971
59. AE Martin BK Burgess CD Stout VL Cash DR Dean GM Jensen PJ Stephens 1990 Proc Natl Acad Sci USA 87 598 602
60. MP Golinelli LA Akin BR Crouse MK Johnson J Meyer 1996 Biochemistry 35 8995 9002
61. B Masepohl M Kutsche KU Riedel M Schmehl W Klipp A Puhler 1992 Mol Gen Genet 233 33 41
62. SE Iismaa AE Vazquez GM Jensen PJ Stephens JN Butt FA Armstrong BK Burgess 1991 J Biol Chem 266 21563 21571
63. J Soman SE Iismaa CD Stout 1991 J Biol Chem 266 21558 21562
64. RA Torres T Lovell L Noodleman DA Case 2003 Am Chem Soc 125 1923 1936