메뉴 건너뛰기




Volumn 9, Issue , 2009, Pages

Construction of siRNA/miRNA expression vectors based on a one-step PCR process

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY RATE; E. COLI; EXPRESSION VECTORS; HIGH-THROUGHPUT; HIGH-THROUGHPUT ASSAYS; HOMOLOGOUS RECOMBINATION; HUMAN DISEASE; IN-VIVO; LINEAR EXPRESSION; LONG OLIGONUCLEOTIDE; MAMMALIAN CELLS; PCR PRODUCTS; RNA INTERFERENCE; TARGET GENE EXPRESSION; UV LIGHT;

EID: 67649506336     PISSN: None     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/1472-6750-9-53     Document Type: Article
Times cited : (11)

References (33)
  • 1
    • 4644350944 scopus 로고    scopus 로고
    • Unlocking the potential of the human genome with RNA interference
    • 10.1038/nature02870 15372045
    • Hannon GJ Rossi JJ Unlocking the potential of the human genome with RNA interference Nature 2004, 431:371-378. 10.1038/nature02870 15372045
    • (2004) Nature , vol.431 , pp. 371-378
    • Hannon, G.J.1    Rossi, J.J.2
  • 2
    • 33847007102 scopus 로고    scopus 로고
    • MicroRNA: Past and present
    • 10.2741/2234 17127242
    • Wang Y Stricker HM Gou D Liu L MicroRNA: Past and present Front Biosci 2007, 12:2316-2329. 10.2741/2234 17127242
    • (2007) Front Biosci , vol.12 , pp. 2316-2329
    • Wang, Y.1    Stricker, H.M.2    Gou, D.3    Liu, L.4
  • 3
    • 0036294527 scopus 로고    scopus 로고
    • Both natural and designed microRNAs can inhibit the expression of cognate mRNAs when expressed in human cells
    • 10.1016/S1097-2765(02)00541-5 12086629
    • Zeng Y Wagner EJ Cullen BR Both natural and designed microRNAs can inhibit the expression of cognate mRNAs when expressed in human cells Mol Cell 2002, 9:1327-1333. 10.1016/S1097-2765(02)00541-5 12086629
    • (2002) Mol Cell , vol.9 , pp. 1327-1333
    • Zeng, Y.1    Wagner, E.J.2    Cullen, B.R.3
  • 5
    • 46049089802 scopus 로고    scopus 로고
    • Functional characterization of endogenous siRNA target genes in Caenorhabditis elegans
    • 2440555 18522735 10.1186/1471-2164-9-270
    • Asikainen S Heikkinen L Wong G Storvik M Functional characterization of endogenous siRNA target genes in Caenorhabditis elegans BMC Genomics 2008, 9:270. 2440555 18522735 10.1186/1471-2164-9-270
    • (2008) BMC Genomics , vol.9 , pp. 270
    • Asikainen, S.1    Heikkinen, L.2    Wong, G.3    Storvik, M.4
  • 6
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • 10.1038/35078107 11373684
    • Elbashir SM Harborth J Lendeckel W Yalcin A Weber K Tuschl T Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells Nature 2001, 411:494-498. 10.1038/35078107 11373684
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 7
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • 10.1038/35053110 11201747
    • Bernstein E Caudy AA Hammond SM Hannon GJ Role for a bidentate ribonuclease in the initiation step of RNA interference Nature 2001, 409:363-366. 10.1038/35053110 11201747
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 8
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • 10.1016/S0092-8674(04)00045-5 14744438
    • Bartel DP MicroRNAs: Genomics, biogenesis, mechanism, and function Cell 2004, 116:281-297. 10.1016/S0092-8674(04)00045-5 14744438
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 9
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • 10.1038/418244a 12110901
    • Hannon GJ RNA interference Nature 2002, 418:244-251. 10.1038/418244a 12110901
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 10
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • 10.1126/science.1064023 11498593
    • Hammond SM Boettcher S Caudy AA Kobayashi R Hannon GJ Argonaute2, a link between genetic and biochemical analyses of RNAi Science 2001, 293:1146-1150. 10.1126/science.1064023 11498593
    • (2001) Science , vol.293 , pp. 1146-1150
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 11
    • 33644519040 scopus 로고    scopus 로고
    • Building mammalian signalling pathways with RNAi screens
    • 16496020 16496020 10.1038/nrm1860
    • Moffat J Sabatini DM Building mammalian signalling pathways with RNAi screens Nat Rev Mol Cell Biol 2006, 7(3):177-87. 16496020 16496020 10.1038/nrm1860
    • (2006) Nat Rev Mol Cell Biol , vol.7 , Issue.3 , pp. 177-187
    • Moffat, J.1    Sabatini, D.M.2
  • 12
    • 13844281898 scopus 로고    scopus 로고
    • Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy
    • 10.1038/nbt1051 15619617
    • Kim DH Behlke MA Rose SD Chang MS Choi S Rossi JJ Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy Nat Biotechnol 2005, 23:222-226. 10.1038/nbt1051 15619617
    • (2005) Nat Biotechnol , vol.23 , pp. 222-226
    • Kim, D.H.1    Behlke, M.A.2    Rose, S.D.3    Chang, M.S.4    Choi, S.5    Rossi, J.J.6
  • 13
    • 1842631431 scopus 로고    scopus 로고
    • Small interfering RNA production by enzymatic engineering of DNA (SPEED)
    • 397411 15024103 10.1073/pnas.0400551101
    • Luo B Heard AD Lodish HF Small interfering RNA production by enzymatic engineering of DNA (SPEED) Proc Natl Acad Sci USA 2004, 101:5494-5499. 397411 15024103 10.1073/pnas.0400551101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 5494-5499
    • Luo, B.1    Heard, A.D.2    Lodish, H.F.3
  • 14
    • 0037335550 scopus 로고    scopus 로고
    • Recombinant Dicer efficiently converts large dsRNAs into siRNAs suitable for gene silencing
    • 10.1038/nbt792 12592410
    • Myers JW Jones JT Meyer T Ferrell JE Jr Recombinant Dicer efficiently converts large dsRNAs into siRNAs suitable for gene silencing Nat Biotechnol 2003, 21:324-328. 10.1038/nbt792 12592410
    • (2003) Nat Biotechnol , vol.21 , pp. 324-328
    • Myers, J.W.1    Jones, J.T.2    Meyer, T.3    Ferrell Jr., J.E.4
  • 15
    • 33747024517 scopus 로고    scopus 로고
    • PCR-based generation of shRNA libraries from cDNAs
    • 1533825 16790063 10.1186/1472-6750-6-28
    • Du C Ge B Liu Z Fu K Chan WC McKeithan TW PCR-based generation of shRNA libraries from cDNAs BMC Biotechnol 2006, 6:28. 1533825 16790063 10.1186/ 1472-6750-6-28
    • (2006) BMC Biotechnol , vol.6 , pp. 28
    • Du, C.1    Ge, B.2    Liu, Z.3    Fu, K.4    Chan, W.C.5    McKeithan, T.W.6
  • 16
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • 10.1126/science.1068999 11910072
    • Brummelkamp TR Bernards R Agami R A system for stable expression of short interfering RNAs in mammalian cells Science 2002, 296:550-553. 10.1126/science.1068999 11910072
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 17
    • 0043238703 scopus 로고    scopus 로고
    • Gene silencing in mammalian cells by PCR-based short hairpin RNA
    • 10.1016/S0014-5793(03)00630-6 12885417
    • Gou D Jin N Liu L Gene silencing in mammalian cells by PCR-based short hairpin RNA FEBS Lett 2003, 548:113-118. 10.1016/S0014-5793(03)00630-6 12885417
    • (2003) FEBS Lett , vol.548 , pp. 113-118
    • Gou, D.1    Jin, N.2    Liu, L.3
  • 18
    • 19444386359 scopus 로고    scopus 로고
    • Gene silencing in alveolar type II cells using cell-specific promoter in vitro and in vivo
    • 521678 15452203 10.1093/nar/gnh129
    • Gou D Narasaraju T Chintagari NR Jin N Wang P Liu L Gene silencing in alveolar type II cells using cell-specific promoter in vitro and in vivo Nucleic Acids Res 2004, 32:e134. 521678 15452203 10.1093/nar/gnh129
    • (2004) Nucleic Acids Res , vol.32
    • Gou, D.1    Narasaraju, T.2    Chintagari, N.R.3    Jin, N.4    Wang, P.5    Liu, L.6
  • 19
    • 0036251639 scopus 로고    scopus 로고
    • Effective expression of small interfering RNA in human cells
    • 10.1038/nbt0502-505 11981566
    • Paul CP Good PD Winer I Engelke DR Effective expression of small interfering RNA in human cells Nat Biotechnol 2002, 20:505-508. 10.1038/ nbt0502-505 11981566
    • (2002) Nat Biotechnol , vol.20 , pp. 505-508
    • Paul, C.P.1    Good, P.D.2    Winer, I.3    Engelke, D.R.4
  • 20
    • 24944560377 scopus 로고    scopus 로고
    • A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells
    • 1196357 16141338 10.1073/pnas.0506306102
    • Stegmeier F Hu G Rickles RJ Hannon GJ Elledge SJ A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells Proc Natl Acad Sci USA 2005, 102:13212-13217. 1196357 16141338 10.1073/pnas.0506306102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13212-13217
    • Stegmeier, F.1    Hu, G.2    Rickles, R.J.3    Hannon, G.J.4    Elledge, S.J.5
  • 21
    • 0037117550 scopus 로고    scopus 로고
    • A DNA vector-based RNAi technology to suppress gene expression in mammalian cells
    • 10.1073/pnas.082117599
    • Sui G Soohoo C Affar EB Gay F Shi Y Forrester WC Shi Y A DNA vector-based RNAi technology to suppress gene expression in mammalian cells roc Natl Acad Sci USA 2002, 99:5515-5520. 10.1073/pnas.082117599
    • (2002) Roc Natl Acad Sci USA , vol.99 , pp. 5515-5520
    • Sui, G.1    Soohoo, C.2    Affar, E.B.3    Gay, F.4    Shi, Y.5    Forrester, W.C.6    Shi, Y.7
  • 22
    • 33747754760 scopus 로고    scopus 로고
    • Lessons from nature: microRNA-based shRNA libraries
    • 10.1038/nmeth923 16929316
    • Chang K Elledge SJ Hannon GJ Lessons from nature: microRNA-based shRNA libraries Nat Methods 2006, 3:707-714. 10.1038/nmeth923 16929316
    • (2006) Nat Methods , vol.3 , pp. 707-714
    • Chang, K.1    Elledge, S.J.2    Hannon, G.J.3
  • 24
    • 36248979862 scopus 로고    scopus 로고
    • Primer-extension based method for the generation of a siRNA/miRNA expression vector
    • 10.1152/physiolgenomics.00005.2007 17804605
    • Gou D Zhang H Baviskar PS Liu L Primer-extension based method for the generation of a siRNA/miRNA expression vector Physiol Genomics 2007, 31:554-562. 10.1152/physiolgenomics.00005.2007 17804605
    • (2007) Physiol Genomics , vol.31 , pp. 554-562
    • Gou, D.1    Zhang, H.2    Baviskar, P.S.3    Liu, L.4
  • 25
    • 13644269779 scopus 로고    scopus 로고
    • Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells
    • 10.1002/jgm.556 15241778
    • Miyagishi M Sumimoto H Miyoshi H Kawakami Y Taira K Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells J Gene Med 2004, 6:715-723. 10.1002/jgm.556 15241778
    • (2004) J Gene Med , vol.6 , pp. 715-723
    • Miyagishi, M.1    Sumimoto, H.2    Miyoshi, H.3    Kawakami, Y.4    Taira, K.5
  • 26
    • 27544495514 scopus 로고    scopus 로고
    • A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation
    • 10.1158/0008-5472.CAN-05-2352 16266980
    • Hayashita Y Osada H Tatematsu Y Yamada H Yanagisawa K Tomida S Yatabe Y Kawahara K Sekido Y Takahashi T A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation Cancer Res 2005, 65:9628-9632. 10.1158/ 0008-5472.CAN-05-2352 16266980
    • (2005) Cancer Res , vol.65 , pp. 9628-9632
    • Hayashita, Y.1    Osada, H.2    Tatematsu, Y.3    Yamada, H.4    Yanagisawa, K.5    Tomida, S.6    Yatabe, Y.7    Kawahara, K.8    Sekido, Y.9    Takahashi, T.10
  • 27
    • 30644463822 scopus 로고    scopus 로고
    • Design and cloning strategies for constructing shRNA expression vectors
    • 1343552 16396676 10.1186/1472-6750-6-1
    • McIntyre GJ Fanning GC Design and cloning strategies for constructing shRNA expression vectors BMC Biotechnol 2006, 6:1. 1343552 16396676 10.1186/1472-6750-6-1
    • (2006) BMC Biotechnol , vol.6 , pp. 1
    • McIntyre, G.J.1    Fanning, G.C.2
  • 28
    • 33744965223 scopus 로고    scopus 로고
    • A simple and economical short-oligonucleotide-based approach to shRNA generation
    • 16756763
    • Kim J Kim H Lee Y Yang K Byun S Han K A simple and economical short-oligonucleotide-based approach to shRNA generation J Biochem Mol Biol 2006, 39:329-334. 16756763
    • (2006) J Biochem Mol Biol , vol.39 , pp. 329-334
    • Kim, J.1    Kim, H.2    Lee, Y.3    Yang, K.4    Byun, S.5    Han, K.6
  • 29
    • 11844258817 scopus 로고    scopus 로고
    • Analysis of T-cell development by using short interfering RNA to knock down protein expression
    • 10.1016/S0076-6879(04)92012-5 15644183
    • Hernandez-Hoyos G Alberola-Ila J Analysis of T-cell development by using short interfering RNA to knock down protein expression Methods Enzymol 2005, 392:199-217. 10.1016/S0076-6879(04)92012-5 15644183
    • (2005) Methods Enzymol , vol.392 , pp. 199-217
    • Hernandez-Hoyos, G.1    Alberola-Ila, J.2
  • 30
    • 28644450043 scopus 로고    scopus 로고
    • An RNA polymerase II construct synthesizes short-hairpin RNA with a quantitative indicator and mediates highly efficient RNAi
    • 1074311 15805121 10.1093/nar/gni061
    • Zhou H Xia XG Xu Z An RNA polymerase II construct synthesizes short-hairpin RNA with a quantitative indicator and mediates highly efficient RNAi Nucleic Acids Res 2005, 33:e62. 1074311 15805121 10.1093/ nar/gni061
    • (2005) Nucleic Acids Res , vol.33
    • Zhou, H.1    Xia, X.G.2    Xu, Z.3
  • 31
    • 37549056267 scopus 로고    scopus 로고
    • Site-directed mutagenesis by combination of homologous recombination and DpnI digestion of the plasmid template in Escherichia coli
    • 10.1016/j.ab.2007.10.034 18037368
    • Li J Li C Xiao W Yuan D Wan G Ma L Site-directed mutagenesis by combination of homologous recombination and DpnI digestion of the plasmid template in Escherichia coli Anal Biochem 2008, 373:389-391. 10.1016/j.ab.2007.10.034 18037368
    • (2008) Anal Biochem , vol.373 , pp. 389-391
    • Li, J.1    Li, C.2    Xiao, W.3    Yuan, D.4    Wan, G.5    Ma, L.6
  • 32
    • 23444431611 scopus 로고
    • Green fluorescent protein as a marker for gene expression
    • 10.1126/science.8303295 8303295
    • Chalfie M Tu Y Euskirchen G Ward WW Prasher DC Green fluorescent protein as a marker for gene expression Science 1994, 263:802-805. 10.1126/ science.8303295 8303295
    • (1994) Science , vol.263 , pp. 802-805
    • Chalfie, M.1    Tu, Y.2    Euskirchen, G.3    Ward, W.W.4    Prasher, D.C.5
  • 33
    • 0030599407 scopus 로고    scopus 로고
    • An enhanced green fluorescent protein allows sensitive detection of gene transfer in mammalian cells
    • 10.1006/bbrc.1996.1573 8885998
    • Zhang G Gurtu V Kain S An enhanced green fluorescent protein allows sensitive detection of gene transfer in mammalian cells Biochem Biophys Res Comm 1996, 227:707-711. 10.1006/bbrc.1996.1573 8885998
    • (1996) Biochem Biophys Res Comm , vol.227 , pp. 707-711
    • Zhang, G.1    Gurtu, V.2    Kain, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.