Interactions of DNA with biofilm-derived membrane vesicles

Journal of Bacteriology

Volumn 191, Issue 13, 2009, Pages 4097-4102

  Schooling, Sarah R ^a   Hubley, Amanda ^a   Beveridge, Terry J ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; BACTERIAL DNA;

ARTICLE; BIOFILM; DNA BINDING; MEMBRANE BINDING; MEMBRANE VESICLE; NONHUMAN; PRIORITY JOURNAL; SURFACE PROPERTY; CELL MEMBRANE; FLUORESCENCE MICROSCOPY; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PSEUDOMONAS AERUGINOSA; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE;

BIOFILMS; CELL MEMBRANE; DNA, BACTERIAL; MICROSCOPY, ELECTRON, TRANSMISSION; MICROSCOPY, FLUORESCENCE; PSEUDOMONAS AERUGINOSA;

EID: 67649392520     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00717-08     Document Type: Article

References (49)

1. Allesen-Holm, M., K. B. Barken, L. Yang, M. Klausen, J. S. Webb, S. Kjelleberg, S. Molin, M. Givskov, and T. Tolker-Nielsen. 2006. A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms. Mol. Microbiol. 59:1114-1128.
2. Bauman, S. J., and M. J. Kuehn. 2006. Purification of outer membrane vesicles from Pseudomonas aeruginosa and their activation of an IL-8 response. Microbes Infect. 8:2400-2408.
3. Beveridge, T. J., S. A. Makin, J. L. Kadurugamuwa, and Z. Li. 1997. Interactions between biofilms and the environment. FEMS Microbiol. Rev. 20:291-303.
4. Beveridge, T. J. 1999. Structures of gram-negative cell walls and their derived membrane vesicles. J. Bacteriol. 181:4725-4733.
5. Böckelmann, U., A. Janke, R. Kuhn, T. R. Neu, J. Wecke, J. R. Lawrence, and U. Szewzyk. 2006. Bacterial extracellular DNA forming a defined network-like structure. FEMS Microbiol. Lett. 262:31-38.
6. Böckelmann, U., H. Lünsdorf, and U. Szewzyk. 2007. Ultrastructural and electron energy-loss spectroscopic analysis of an extracellular filamentous matrix of an environmental bacterial isolate. Environ. Microbiol. 9:2137-2144.
7. Branda, S. S., Å. Vik, L. Friedman, and R. Kolter. 2005. Biofilms: the matrix revisited. Trends Microbiol. 13:20-26.
8. Caldwell, D. E., D. R. Korber, and J. R. Lawrence. 1992. Confocal laser microscopy and digital image analysis in microbial ecology. Adv. Microb. Ecol. 12:1-67.
9. Claessens, J., T. Behrends, and P. V. Cappallen. 2004. What do acid-base titrations of live bacteria tell us? A preliminary assessment. Aquat. Sci. 66:19-26.
10. Cox, J. S., D. S. Smith, L. A. Warren, and F. G. Ferris. 1999. Characterizing heterogeneous bacterial surface functional groups using discrete affinity spectra for proton binding. Environ. Sci. Technol. 33:4514-4521.
11. Deich, R. A., and L. C. Hoyer. 1982. Generation and release of DNA-binding vesicles by Haemophilus influenzae during induction and loss of competence. J. Bacteriol. 152:855-864.
12. Dorward, D. E., C. F. Garon, and R. C. Judd. 1989. Export and intercellular transfer of DNA via membrane blebs of Neisseria gonorrhoeae. J. Bacteriol. 171:2499-2505.
13. Dorward, D. E., and C. F. Garon. 1990. DNA is packaged within membrane-derived vesicles of gram-negative but not gram-positive bacteria. Appl. Environ. Microbiol. 56:1960-1962.
14. Fein, J. B., C. J. Daughney, N. Yee, and T. A. Davis. 1997. A chemical equilibrium model for metal adsorption onto bacterial surfaces. Geochim. Cosmochim. Acta 61:3319-3328.
15. Flemming, H.-C., and J. Wingender. 1999. Relevance of microbial extracellular polymeric substances (EPSs) - part I: structural and ecological aspects. Water Sci. Technol. 43(6):1-8.
16. Halhoul, N., and J. R. Colvin. 1975. The ultrastructure of bacterial plaque attached to the gingiva of man. Arch. Oral Biol. 20:115-118.
17. Hunter, R. C., and T. J. Beveridge. 2005. Application of a pH-sensitive fluoroprobe (C-SNARF-4) for pH microenvironment analysis in Pseudomonas aeruginosa biofilms. Appl. Environ. Microbiol. 71:2501-2510.
18. Hunter, R. C., and T. J. Beveridge. 2005. High-resolution visualization of Pseudomonas aeruginosa PAO1 biofilms by freeze-substitution transmission electron microscopy. J. Bacteriol. 187:7619-7630.
19. Jurcisek, J. A., and L. O. Bakaletz. 2007. Biofilms formed by nontypeable Haemophilus influenzae in vivo contain both double-stranded DNA and type IV pilin protein. J. Bacteriol. 189:3868-3875.
20. Kadurugamuwa, J. L., and T. J. Beveridge. 1995. Virulence factors are released from Pseudomonas aeruginosa in association with membrane vesicles during normal growth and exposure to gentamicin: a novel mechanism of enzyme secretion. J. Bacteriol. 177:3998-4008.
21. Kahn, M., M. Concino, R. Gromkova, and S. Goodgal. 1979. DNA binding activity of vesicles produced by competence deficient mutants of Haemophilus. Biochem. Biophys. Res. Commun. 87:764-772.
22. Keenan, J. L., and R. A. Allardyce. 2000. Iron influences the expression of Helicobacter pylori outer membrane vesicle-associated virulence factors. Eur. J. Gastroenterol. Hepatol. 12:1267-1273.
23. Kolling, G. L., and K. R. Matthews. 1999. Export of virulence genes and Shiga toxin by membrane vesicles of Escherichia coli O157:H7. Appl. Environ. Microbiol. 65:1843-1848.
24. Kuehn, M. J., and N. C. Kesty. 2005. Bacterial outer membrane vesicles and the host-pathogen interaction. Genes Dev. 19:2645-2655.
25. Lorenz, M. G., and W. Wackernagel. 1994. Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Rev. 58:563-602.
26. a distribution method. J. Colloid Interface Sci. 253:130-139.
27. Mashburn-Warren, L., R. J. Mclean, and M. Whiteley. 2008. Gram-negative outer membrane vesicles: beyond the cell surface. Geobiology 6:214-219.
28. Mashburn-Warren, L. M., and M. Whiteley. 2006. Special delivery: vesicle trafficking in prokaryotes. Mol. Microbiol. 61:839-846.
29. Matsukawa, M., and E. P. Greenberg. 2004. Putative exopolysaccharide synthesis genes influence Pseudomonas aeruginosa biofilm development. J. Bacteriol. 186:4449-4456.
30. Mayrand, D., and D. Grenier. 1989. Biological activities of outer membrane vesicles. Can. J. Microbiol. 35:607-613.
31. Molin, S., and T. Tolker-Nielsen. 2003. Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure. Curr. Opin. Biotechnol. 14:255-261.
32. Moore, D., and D. Dowhan. 2002. Preparation and analysis of DNA, p. 2.1.1-2.1.10. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology. John Wiley & Sons, Inc., New York, NY.
33. Murakawa, T. 1973. Slime production by Pseudomonas aeruginosa. III. Purification of slime and its physicochemical properties. Jpn. J. Microbiol. 17:273-281.
34. Nemoto, K., K. Hirota, K. Murakami, K. Taniguti, H. Murata, D. Viduvic, and Y. Miyake. 2003. Effect of varidase (streptodornase) on biofilm formed by Pseudomonas aeruginosa. Chemotherapy 49:121-125.
35. Ngwenya, B. T., I. W. Sutherland, and L. Kennedy. 2003. Comparison of the acid-base behaviour and metal adsorption characteristics of a gram-negative bacterium with other strains. Appl. Geochem. 18:527-538.
36. Petersen, F. C., L. Tao, and A. A. Scheie. 2005. DNA binding-uptake system: a link between cell-to-cell communication and biofilm formation. J. Bacteriol. 187:4392-4400.
37. Phoenix, V. R., R. E. Martinez, K. Konhauser, and F. G. Ferris. 2002. Characterization and implications of the cell surface reactivity of Calothrix sp. strain KC97. Appl. Environ. Microbiol. 68:4827-4834.
38. -1 region. Biofilms 2:165-175.
39. Renelli, M., V. Matias, R. Lo, and T. J. Beveridge. 2004. DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic information potential. Microbiology 150:2161-2169.
40. Schooling, S. R., and T. J. Beveridge. 2006. Membrane vesicles: an overlooked component of the matrices of biofilms. J. Bacteriol. 188:5945-5957.
41. van Schaik, E. J., C. L. Giltner, G. F. Audette, D. W. Keizer, D. L. Bautista, C. M. Slupsky, B. D. Sykes, and R. T. Irvin. 2005. DNA binding: a novel function of Pseudomonas aeruginosa type IV pili. J. Bacteriol. 187:1455-1464.
42. Venable, J. H., and R. Coggeshall. 1965. A simplified lead citrate stain for use in electron microscopy. J. Cell Biol. 25:407.
43. Walker, T. S., K. L. Tomlin, G. S. Worthen, K. R. Poch, J. G. Lieber, M. T. Saavedra, M. B. Fessler, K. C. Malcolm, M. L. Vasil, and J. A. Nick. 2005. Enhanced Pseudomonas aeruginosa biofilm development mediated by human neutrophils. Infect. Immun. 73:3693-3701.
44. Whitchurch, C. B., T. Tolker-Nielsen, P. C. Ragas, and J. S. Mattick. 2002. Extracellular DNA required for biofilm formation. Science 295:1487.
45. Wilson, K. 1997. Preparation and analysis of DNA, p. 2.4.1-2.4.5. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology. John Wiley & Sons, Inc., New York, NY.
46. Wingender, J., T. R. Neu, and H.-C. Flemming (ed.). 1999. Microbial extracellular polymeric substances: characterization, structure and function, p. 1-19. Springer-Verlag, Berlin, Germany.
47. Wolfaardt, G. M., J. R. Lawrence, and D. R. Korber. 1999. Function of EPS, p. 171-200. In J. Wingender, T. R. Neu, and H.-C. Flemming (ed.), Microbial extracellular polymeric substances: characterization, structure and function. Springer-Verlag, Berlin, Germany.
48. Yaron, S., G. L. Kolling, L. Simon, and K. R. Matthews. 2000. Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. Appl. Environ. Microbiol. 66:4414-4420.
49. Zhou, S., D. Liang, C. Burger, F. Yeh, and B. Chu. 2004. Nanostructures of complexes formed by calf thymus DNA interacting with cationic substances. Biomacromolecules 5:1256-1261.