-
1
-
-
33748668212
-
Pairagon+ N-SCAN_EST: A model-based gene annotation pipeline
-
Arumugam,M. et al. (2006) Pairagon+ N-SCAN_EST: A model-based gene annotation pipeline. Genome Biol., 7 (Suppl 1), S5.
-
(2006)
Genome Biol
, vol.7
, Issue.SUPPL. 1
-
-
Arumugam, M.1
-
2
-
-
0031732094
-
A computer program for aligning a cDNA sequence with a genomic DNA sequence
-
Florea,L. et al. (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res., 8, 967.
-
(1998)
Genome Res
, vol.8
, pp. 967
-
-
Florea, L.1
-
3
-
-
43349092271
-
Aspace-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence
-
Gotoh,O. (2008) Aspace-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence. Nucleic Acids Res., 36, 2630.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2630
-
-
Gotoh, O.1
-
4
-
-
46649115430
-
Splign: Algorithms for computing spliced alignments with identification of paralogs
-
Kapustin,Y. et al. (2008) Splign: Algorithms for computing spliced alignments with identification of paralogs. Biol. Direct, 3, 20.
-
(2008)
Biol. Direct
, vol.3
, pp. 20
-
-
Kapustin, Y.1
-
5
-
-
34047153463
-
The treeterbi and parallel treeterbi algorithms: Efficient, optimal decoding for ordinary, generalized and pair HMMs
-
Keibler,E. et al. (2007) The treeterbi and parallel treeterbi algorithms: Efficient, optimal decoding for ordinary, generalized and pair HMMs. Bioinformatics, 23, 545.
-
(2007)
Bioinformatics
, vol.23
, pp. 545
-
-
Keibler, E.1
-
6
-
-
0036226603
-
BLAT - the BLAST-like alignment tool
-
Kent, W. et al. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.1
-
7
-
-
0035476520
-
A computational scan for U12-dependent introns in the human genome sequence
-
Levine,A. and Durbin,R. (2001) A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res., 29 4006.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4006
-
-
Levine, A.1
Durbin, R.2
-
8
-
-
36348965882
-
A cross-species alignment tool (CAT)
-
Li,H. et al. (2007) A cross-species alignment tool (CAT). BMC Bioinformatics, 8, 349.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 349
-
-
Li, H.1
-
9
-
-
39049145326
-
Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
-
Lunter,G. et al. (2008) Uncertainty in homology inferences: Assessing and improving genomic sequence alignment. Genome Res., 18, 298.
-
(2008)
Genome Res
, vol.18
, pp. 298
-
-
Lunter, G.1
-
12
-
-
34548118821
-
PALMA: MRNA to genome alignments using large margin algorithms
-
Schulze,U. et al. (2007) PALMA: MRNA to genome alignments using large margin algorithms. Bioinformatics, 23, 1892-1900.
-
(2007)
Bioinformatics
, vol.23
, pp. 1892-1900
-
-
Schulze, U.1
-
13
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater,G. and Birney,E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics, 6, 1471-2105.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 1471-2105
-
-
Slater, G.1
Birney, E.2
-
14
-
-
0034129194
-
Optimal spliced alignment of homologous cDNA to a genomic DNA template
-
Usuka,J. et al. (2000) Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics, 16, 203-211.
-
(2000)
Bioinformatics
, vol.16
, pp. 203-211
-
-
Usuka, J.1
-
15
-
-
0035189310
-
Spidey: A tool for mRNA-to-genomic alignments
-
Wheelan,S. et al. (2001) Spidey: A tool for mRNA-to-genomic alignments. Genome Res., 11, 1952.
-
(2001)
Genome Res
, vol.11
, pp. 1952
-
-
Wheelan, S.1
-
16
-
-
18744383071
-
GMAP: A genomic mapping and alignment program for mRNA and EST sequences
-
Wu,T. and Watanabe,C. (2005) GMAP: A genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics, 21, 1859-1875.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.1
Watanabe, C.2
-
17
-
-
30344435920
-
Improved spliced alignment from an information theoretic approach
-
Zhang,M. and Gish,W. (2006) Improved spliced alignment from an information theoretic approach. Bioinformatics, 22, 13-20.
-
(2006)
Bioinformatics
, vol.22
, pp. 13-20
-
-
Zhang, M.1
Gish, W.2
|