-
1
-
-
0037442962
-
HADDOCK: Aprotein-protein docking approach based on biochemical or biophysical information
-
Dominguez, C., Boelens, R., and Bonvin, A. M. J. J. (2003) HADDOCK: Aprotein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125, 1731-1737.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.J.J.3
-
2
-
-
0030856717
-
Calcium-induced structural transition in the regulatory domain of human cardiac troponin C
-
DOI 10.1021/bi971223d
-
Spyracopoulos, L., Li, M. X., Sia, S. K., Gagne, S. M., Chandra, M., Solaro, R. J., and Sykes, B. D. (1997) Calcium-induced structural transition in the regulatory domain of human cardiac troponin C. Biochemistry 36, 12138-12146. (Pubitemid 27440950)
-
(1997)
Biochemistry
, vol.36
, Issue.40
, pp. 12138-12146
-
-
Spyracopoulos, L.1
Li, M.X.2
Sia, S.K.3
Gagne, S.M.4
Chandra, M.5
Solaro, R.J.6
Sykes, B.D.7
-
3
-
-
0033614841
-
147-163 induces a structural opening in human cardiac troponin-C
-
Li, M. X., Spyracopoulos, L., and Sykes, B. D. (1999) Binding of cardiac troponin-I147-163 induces a structural opening in human cardiac troponin-C. Biochemistry 38, 8289-8298. (Pubitemid 129515143)
-
(1999)
Biochemistry
, vol.38
, Issue.26
, pp. 8289-8298
-
-
Li, M.X.1
Spyracopoulos, L.2
Sykes, B.D.3
-
4
-
-
0037163141
-
Structure of the regulatory N-domain of human cardiac troponin C in complex with human cardiac troponin I147-163 and bepridil
-
Wang, X., Li, M. X., and Sykes, B. D. (2002) Structure of the regulatory N-domain of human cardiac troponin C in complex with human cardiac troponin I147-163 and bepridil. J. Biol. Chem. 277, 31124-31133.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 31124-31133
-
-
Wang, X.1
Li, M.X.2
Sykes, B.D.3
-
5
-
-
0029160568
-
Calcium-induced conformational transition revealed by the solution structure of apo calmodulin
-
Zhang, M., Tanaka, T., and Ikura, M. (1995) Calcium-induced conformational transition revealed by the solution structure of apo calmodulin. Nat. Struct. Biol. 2, 758-767.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 758-767
-
-
Zhang, M.1
Tanaka, T.2
Ikura, M.3
-
6
-
-
0032512626
-
Solution structure of calmodulin- W-7 complex: The basis of diversity in molecular recognition
-
Osawa, M., Swindells, M. B., Tanikawa, J., Tanaka, T., Mase, T., Furuya, T., and Ikura, M. (1998) Solution structure of calmodulin- W-7 complex: The basis of diversity in molecular recognition. J. Mol. Biol. 276, 165-176.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 165-176
-
-
Osawa, M.1
Swindells, M.B.2
Tanikawa, J.3
Tanaka, T.4
Mase, T.5
Furuya, T.6
Ikura, M.7
-
7
-
-
0346057933
-
Interplay of Troponin- And Myosin-Based Pathways of Calcium Activation in Skeletal and Cardiac Muscle: The Use of W7 As An Inhibitor of Thin Filament Activation
-
Adhikari, B. B., and Wang, K. (2004) Interplay of troponin- and myosin-based pathways of calcium activation in skeletal and cardiac muscle: The use of W7 as an inhibitor of thin filament activation. Biophys. J. 86, 359-370. (Pubitemid 38067464)
-
(2004)
Biophysical Journal
, vol.86
, Issue.1 I
, pp. 359-370
-
-
Adhikari, B.B.1
Wang, K.2
-
8
-
-
40849131184
-
Interaction of cardiac troponin with cardiotonic drugs: A structural perspective
-
Li, M. X., Robertson, I. M., and Sykes, B. D. (2008) Interaction of cardiac troponin with cardiotonic drugs: A structural perspective. Biochem. Biophys. Res. Commun. 369 (1), 88-99.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.369
, Issue.1
, pp. 88-99
-
-
Li, M.X.1
Robertson, I.M.2
Sykes, B.D.3
-
9
-
-
28544448128
-
The binding of W7, an inhibitor of striated muscle contraction, to cardiac troponin C
-
DOI 10.1021/bi051583y
-
Hoffman, R. M. B., Li, M. X., and Sykes, B. D. (2005) The binding of W7, an inhibitor of striated muscle contraction, to cardiac troponin C. Biochemistry 44, 15750-15759. (Pubitemid 41746906)
-
(2005)
Biochemistry
, vol.44
, Issue.48
, pp. 15750-15759
-
-
Hoffman, R.M.B.1
Li, M.X.2
Sykes, B.D.3
-
10
-
-
33747480590
-
Interaction of cardiac troponin C and troponin I with W7 in the presence of three functional regions of cardiac troponin I
-
DOI 10.1021/bi060779a
-
Li, M. X., Hoffman, R. M. B., and Sykes, B. D. (2006) Interaction of cardiac troponin C with W7 in the presence of three functional regions of cardiac troponin I. Biochemistry 45, 9833-9840. (Pubitemid 44257428)
-
(2006)
Biochemistry
, vol.45
, Issue.32
, pp. 9833-9840
-
-
Li, M.X.1
Hoffman, R.M.B.2
Sykes, B.D.3
-
11
-
-
0018906488
-
Calcium-regulated modulator protein interacting agents inhibit smooth muscle calcium-stimulated protein kinase and ATPase
-
Hidaka, H., Yamaki, T., Naka, M., Tanaka, T., Hayashi, H., and Kobayashi, R. (1980) Calcium-regulated modulator protein interacting agents inhibit smooth muscle calcium-stimulated protein kinase and ATPase. Mol. Pharmacol. 17, 66-72.
-
(1980)
Mol. Pharmacol.
, vol.17
, pp. 66-72
-
-
Hidaka, H.1
Yamaki, T.2
Naka, M.3
Tanaka, T.4
Hayashi, H.5
Kobayashi, R.6
-
12
-
-
67649227631
-
Structural bases for the activity of W7, an inhibitor of striated muscle contraction
-
Presented at
-
Hoffman, R. M. B., Li, M. X., and Sykes, B. D. (2005) Structural bases for the activity of W7, an inhibitor of striated muscle contraction. Presented at Keystone Symposia: Frontiers of NMR in Molecular Biology IX, Banff, AB, Jan. 29-Feb. 4, 2005.
-
(2005)
Keystone Symposia: Frontiers of NMR in Molecular Biology IX, Banff, AB, Jan. 29-Feb. 4, 2005
-
-
Hoffman, R.M.B.1
Li, M.X.2
Sykes, B.D.3
-
13
-
-
0029840073
-
Complexes formed between calmodulin and the antagonists J-8 and TFP in solution
-
DOI 10.1021/bi9605043
-
Craven, C. J., Whitehead, B., Jones, S. K., Thulin, E., Blackburn, G. M., and Waltho, J. P. (1996) Complexes formed between calmodulin and the antagonists J-8 and TFP in solution. Biochemistry 35, 10287-10299. (Pubitemid 26277287)
-
(1996)
Biochemistry
, vol.35
, Issue.32
, pp. 10287-10299
-
-
Craven, C.J.1
Whitehead, B.2
Jones, S.K.A.3
Thulin, E.4
Blackburn, G.M.5
Waltho, J.P.6
-
14
-
-
0030815460
-
Effects of protein kinase a phosphorylation on signaling between cardiac troponin I and the N-terminal domain of cardiac troponin C
-
DOI 10.1021/bi9710129
-
Chandra, M., Dong, W. J., Pan, B. S., Cheung, H. C., and Solaro, R. J. (1997) Effects of protein kinase A phosphorylation on signaling between cardiac troponin I and the N-terminal domain of cardiac troponin C. Biochemistry 36, 13305-13311. (Pubitemid 27473378)
-
(1997)
Biochemistry
, vol.36
, Issue.43
, pp. 13305-13311
-
-
Chandra, M.1
Dong, W.-J.2
Pan, B.-S.3
Cheung, H.C.4
Solaro, R.J.5
-
15
-
-
43649101847
-
Internal pH indicators for biomolecular NMR
-
Baryshnikova, O. K., Williams, T. C., and Sykes, B. D. (2008) Internal pH indicators for biomolecular NMR. J. Biomol. NMR 41, 5-7.
-
(2008)
J. Biomol. NMR
, vol.41
, pp. 5-7
-
-
Baryshnikova, O.K.1
Williams, T.C.2
Sykes, B.D.3
-
16
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
17
-
-
4644259437
-
Using NMRView to visualize and analyze the NMR spectra of macromolecules
-
Johnson, B. A. (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278, 313-352.
-
(2004)
Methods Mol. Biol.
, vol.278
, pp. 313-352
-
-
Johnson, B.A.1
-
18
-
-
0028022578
-
13C HMQC-NOESY experiment for extracting intermolecular NOE contacts in molecular complexes
-
13C HMQC-NOESY experiment for extracting intermolecular NOE contacts in molecular complexes. FEBS Lett. 350, 87-90.
-
(1994)
FEBS Lett.
, vol.350
, pp. 87-90
-
-
Lee, W.1
Revington, M.J.2
Arrowsmith, C.3
Kay, L.E.4
-
21
-
-
28944439294
-
Calmodulin antagonists: Structure of N-(6-aminohexyl)-5- Chloro-1-naphthalenesulfonamide hydrochloride (W-7) and comparison with trifluoperazine (TFP)-Calmodulin binding
-
Hempel, A., Camerman, N., Mastropaolo, D., and Camerman, A. (2005) Calmodulin antagonists: Structure of N-(6-aminohexyl)-5- chloro-1- naphthalenesulfonamide hydrochloride (W-7) and comparison with trifluoperazine (TFP)-Calmodulin binding. Can. J. Chem. 83, 1141-1145.
-
(2005)
Can. J. Chem.
, vol.83
, pp. 1141-1145
-
-
Hempel, A.1
Camerman, N.2
Mastropaolo, D.3
Camerman, A.4
-
22
-
-
0035742323
-
Internal coordinates for molecular dynamics and minimization in structure determination and refinement
-
Schwieters, C. D., and Clore, G. M. (2001) Internal coordinates for molecular dynamics and minimization in structure determination and refinement. J. Magn. Reson. 2, 288-302.
-
(2001)
J. Magn. Reson.
, vol.2
, pp. 288-302
-
-
Schwieters, C.D.1
Clore, G.M.2
-
23
-
-
0030000912
-
Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases
-
Kuszewski, J., Gronenborn, A. M., and Clore, G. M. (1996) Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases. Protein Sci. 5, 1067-1080. (Pubitemid 26172895)
-
(1996)
Protein Science
, vol.5
, Issue.6
, pp. 1067-1080
-
-
Kuszewski, J.1
Gronenborn, A.M.2
Clore, G.M.3
-
24
-
-
2942565710
-
An empirical backbone-backbone hydrogen-bonding potential in proteins and its applications to NMR structure refinement and validation
-
Grishaev, A., and Bax, A. (2004) An empirical backbone-backbone hydrogen-bonding potential in proteins and its applications to NMR structure refinement and validation. J. Am. Chem. Soc. 126, 7281-7292.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 7281-7292
-
-
Grishaev, A.1
Bax, A.2
-
25
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8, 477-486. (Pubitemid 126706801)
-
(1996)
Journal of Biomolecular NMR
, vol.8
, Issue.4
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.C.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
27
-
-
0003520774
-
-
Wiley, New York
-
Silverstein, R. M., Bassler, G. C., and Morrill, T. C. (1991) Spectrometric identification of organic compounds , 5th ed., p 248, Wiley, New York.
-
(1991)
Spectrometric Identification of Organic Compounds, 5th Ed.
, pp. 248
-
-
Silverstein, R.M.1
Bassler, G.C.2
Morrill, T.C.3
-
29
-
-
0030047142
-
Errors in protein structures [3]
-
Hooft, R. W., Vriend, G., Sander, C., and Abola, E. E. (1996) Errors in protein structures. Nature 381, 272. (Pubitemid 26000124)
-
(1996)
Nature
, vol.381
, Issue.6580
, pp. 272
-
-
Hooft, R.W.W.1
Vriend, G.2
Sander, C.3
Abola, E.E.4
-
30
-
-
21044449889
-
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
-
DOI 10.1002/prot.20408
-
Nederveen, A. J., Doreleijers, J. F., Vranken, W., Miller, Z., Spronk, C. A. E. M., Nabuurs, S. B., Guntert, P., Livny, M., Markley, J. L., Nilges, M., Ulrich, E. L., Kaptein, R., and Bonvin, A. M. J. J. (2005) RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins 4, 662-672. (Pubitemid 40695843)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.59
, Issue.4
, pp. 662-672
-
-
Nederveen, A.J.1
Doreleijers, J.F.2
Vranken, W.3
Miller, Z.4
Spronk, C.A.E.M.5
Nabuurs, S.B.6
Guntert, P.7
Livny, M.8
Markley, J.L.9
Nilges, M.10
Ulrich, E.L.11
Kaptein, R.12
Bonvin, A.M.J.J.13
-
32
-
-
0029022355
-
Conformational variability of solution nuclear magnetic resonance structures
-
Bonvin, A. M. J. J., and Brunger, A. T. (1995) Conformational variability of solution nuclear magnetic resonance structures. J. Mol. Biol. 250, 80-93.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 80-93
-
-
Bonvin, A.M.J.J.1
Brunger, A.T.2
-
33
-
-
0032546788
-
Solution structure and main chain dynamics of the regulatory domain (residues 1-91) of human cardiac troponin C
-
Paakkonen, K., Annila, A., Sorsa, T., Pollesello, P., Tilgmann, C., Kilpelainen, I., Karisola, P., Ulmanen, I., and Drakenberg, T. (1998) Solution structure and main chain dynamics of the regulatory domain (residues 1-91) of human cardiac troponin C. J. Biol. Chem. 273, 15633-15638.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 15633-15638
-
-
Paakkonen, K.1
Annila, A.2
Sorsa, T.3
Pollesello, P.4
Tilgmann, C.5
Kilpelainen, I.6
Karisola, P.7
Ulmanen, I.8
Drakenberg, T.9
-
34
-
-
22144489530
-
Inferential structure determination
-
Rieping, W., Habeck, M., and Nilges, M. (2005) Inferential structure determination. Science 309, 303-306.
-
(2005)
Science
, vol.309
, pp. 303-306
-
-
Rieping, W.1
Habeck, M.2
Nilges, M.3
-
35
-
-
32444439415
-
Weighting of experimental evidence in macromolecular structure determination
-
Habeck, M., Rieping, W., and Nilges, M. (2006) Weighting of experimental evidence in macromolecular structure determination. Proc. Natl. Acad. Sci. U.S.A. 6, 1756-1761.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.6
, pp. 1756-1761
-
-
Habeck, M.1
Rieping, W.2
Nilges, M.3
-
36
-
-
0029088936
-
Structures of the troponin C regulatory domains in the apo and calcium-saturated states
-
Gagné, S. M., Tsuda, S., Li, M. X., Smillie, L. B., and Sykes, B. D. (1995) Structures of the troponin C regulatory domains in the apo and calcium-saturated states. Nat. Struct. Biol. 2, 784-789.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 784-789
-
-
Gagné, S.M.1
Tsuda, S.2
Li, M.X.3
Smillie, L.B.4
Sykes, B.D.5
-
37
-
-
0022931544
-
2+-induced conformational transition of troponin C. A trigger for muscle contraction
-
2+-induced conformational transition of troponin C. A trigger for muscle contraction. J. Biol. Chem. 261, 2638-2644.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 2638-2644
-
-
Herzberg, O.1
Moult, J.2
James, M.N.G.3
-
38
-
-
0030936958
-
Mechanism of direct coupling between binding and induced structural change in regulatory calcium binding proteins
-
DOI 10.1021/bi963076+
-
Gagné, S. M., Li, M. X., and Sykes, B. D. (1997) Mechanism of direct coupling between binding and induced structural change in regulatory calcium binding proteins. Biochemistry 36, 4386-4392. (Pubitemid 27180284)
-
(1997)
Biochemistry
, vol.36
, Issue.15
, pp. 4386-4392
-
-
Gagne, S.M.1
Li, M.X.2
Sykes, B.D.3
-
39
-
-
0033773598
-
Conformations of the regulatory domain of cardiac troponin C examined by residual dipolar couplings
-
Paakkonen, K., Sorsa, T., Drakenberg, T., Pollesello, P., Tilgmann, C., Permi, P., Heikkinen, S., Kilpelainen, I., and Annila, A. (2000) Conformations of the regulatory domain of cardiac troponin C examined by residual dipolar couplings. Eur. J. Biochem. 267, 6665-6672.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 6665-6672
-
-
Paakkonen, K.1
Sorsa, T.2
Drakenberg, T.3
Pollesello, P.4
Tilgmann, C.5
Permi, P.6
Heikkinen, S.7
Kilpelainen, I.8
Annila, A.9
-
40
-
-
33846505918
-
3+ ions: Application to the N-terminal domain of cardiac troponinC
-
3+ ions: Application to the N-terminal domain of cardiac troponinC. J. Biomol. NMR 37, 79-95.
-
(2007)
J. Biomol. NMR
, vol.37
, pp. 79-95
-
-
Eichmuller, C.1
Skrynnikov, N.R.2
-
41
-
-
0020000902
-
2+-calmodulin complex with calmodulin antagonists. Naphthalenesulfonamide derivatives
-
2+-calmodulin complex with calmodulin antagonists. Naphthalenesulfonamide derivatives. Mol. Pharmacol. 22, 403-407.
-
(1982)
Mol. Pharmacol.
, vol.22
, pp. 403-407
-
-
Tanaka, T.1
Ohmura, T.2
Hidaka, H.3
-
42
-
-
27744497723
-
The role of electrostatics in the interaction of the inhibitory region of troponin I with troponin C
-
DOI 10.1021/bi051580l
-
Lindhout, D. A., Boyko, R. F., Corson, D. C., Li, M. X., and Sykes, B. D. (2005) The role of electrostatics in the interaction of the inhibitory region of troponin I with troponin C. Biochemistry 44 (45), 14750-14759. (Pubitemid 41612255)
-
(2005)
Biochemistry
, vol.44
, Issue.45
, pp. 14750-14759
-
-
Lindhout, D.A.1
Boyko, R.F.2
Corson, D.C.3
Li, M.X.4
Sykes, B.D.5
-
43
-
-
0013293280
-
The Xplor-NIH NMR molecular structure determination package
-
Schwieters, C. D., Kuszewski, J. J., Tjandra, N., and Clore, G. M. (2003) The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson. 160, 65-73.
-
(2003)
J. Magn. Reson.
, vol.160
, pp. 65-73
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Tjandra, N.3
Clore, G.M.4
|