Proteomic analysis on the temperature-dependent complexes in Thermoanaerobacter tengcongensis

Proteomics

Volumn 9, Issue 11, 2009, Pages 3189-3200

  Meng, Bo ^a,b   Qian, Zhong ^a,b   Wei, Fan ^a,b   Wang, Weiwei ^a   Zhou, Chuanqi ^a,b   Wang, Zhuowei ^a,b   Wang, Quanhui ^c   Tong, Wei ^a,b   Wang, Qian ^a,b   Ma, Yanhe ^c   Xu, Ningzhi ^a,b   Liu, Siqi ^a,b  

^a Chinese Academy of Sciences and China National Center for Bioinformation   (China)

^b Beijing Proteomics Institute   (China)

^c INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

Blue native PAGE; Chaperon; Protein complex; T. tengcongensis; Temperature

Indexed keywords

6 PHOSPHOFRUCTOKINASE; ACYL COENZYME A DEHYDROGENASE; ADENOSINE TRIPHOSPHATASE; ARGININE DEIMINASE; ASPARTATE CARBAMOYLTRANSFERASE; ASPARTYL AMINOPEPTIDASE; BACTERIAL PROTEIN; CELLULASE; DIHYDROOROTASE; DNA TOPOISOMERASE (ATP HYDROLYSING); ENOLASE; FLAVOPROTEIN; FORMAMIDASE; GLUCOSE 6 PHOSPHATE ISOMERASE; GLUTAMATE AMMONIA LIGASE; HYDROLASE; KETOL ACID REDUCTOISOMERASE; LACTATE DEHYDROGENASE; LIPOPROSTAGLANDIN E1; PHOSPHOMANNOMUTASE; PHOSPHORYLASE; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; PROTEIN SERINE KINASE; PYRUVATE SYNTHASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE); RIBONUCLEOTIDE REDUCTASE; RIBOSOME PROTEIN; TRANSALDOLASE; URIDINE KINASE;

ARTICLE; BACTERIUM CULTURE; COMPLEX FORMATION; CONTROLLED STUDY; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; TEMPERATURE DEPENDENCE; TEMPERATURE STRESS; THERMOANAEROBACTER; THERMOANAEROBACTER TENGCONGENSIS; THERMOPHILE; WESTERN BLOTTING;

BACTERIAL PROTEINS; BLOTTING, WESTERN; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MULTIPROTEIN COMPLEXES; POLYMERASE CHAIN REACTION; PROTEOMICS; REPRODUCIBILITY OF RESULTS; STRESS, PHYSIOLOGICAL; TANDEM MASS SPECTROMETRY; TEMPERATURE; THERMOANAEROBACTER;

THERMOANAEROBACTER TENGCONGENSIS;

EID: 67649213037     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800650     Document Type: Article

References (32)

1. Radford, S. E., GroEL: more than just a folding cage. Cell 2006, 125, 831-833. (Pubitemid 43795189)
2. Greaves, R. B., Warwicker, J., Mechanisms for stabilisation and the maintenance of solubility in proteins from thermophiles. BMC Struct. Biol. 2007, 7, 18.
3. Sterner, R., Liebl, W., Thermophilic adaptation of proteins. Crit. Rev. Biochem. Mol. Biol. 2001, 36, 39-106.
4. Truscott, K. N., Hoj, P. B., Scopes, R. K., Purification and characterization of chaperonin 60 and chaperonin 10 from the anaerobic thermophile Thermoanaerobacter brockii. Eur. J. Biochem. 1994, 222, 277-284.
5. Mizobata, T., Kagawa, M., Murakoshi, N., Kusaka, E. et al., Overproduction of Thermus sp. YS 8-13 manganese catalase in Escherichia coli production of soluble apoenzyme and in vitro formation of active holoenzyme. Eur. J. Biochem. 2000, 267, 4264-4271.
6. Gavin, A. C., Bosche, M., Krause, R., Grandi, P. et al., Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415, 141-147. (Pubitemid 34059510)
7. Zhao, R., Houry, W. A., Molecular interaction network of the Hsp90 chaperone system. Adv. Exp. Med. Biol. 2007, 594, 27-36.
8. Rungsarityotin, W., Krause, R., Schodl, A., Schliep, A., Identifying protein complexes directly from high-throughput TAP data with Markov random fields. BMC Bioinformatics 2007, 8, 482. (Pubitemid 351201686)
9. Houry, W. A., Chaperone-assisted protein folding in the cell cytoplasm. Curr. Protein Pept. Sci. 2001, 2, 227-244.
10. Eubel, H., Braun, H. P., Millar, A. H., Blue-native PAGE in plants: a tool in analysis of protein-protein interactions. Plant Methods 2005, 1, 11.
11. Wittig, I., Braun, H. P., Schagger, H., Blue native PAGE. Nat. Protoc. 2006, 1, 418-428.
12. Pyndiah, S., Lasserre, J. P., Menard, A., Claverol, S. et al., Two-dimensional blue native/SDS gel electrophoresis of multiprotein complexes from Helicobacter pylori. Mol. Cell. Proteomics 2007, 6, 193-206.
13. Bao, Q., Tian, Y., Li, W., Xu, Z. et al., A complete sequence of the T. tengcongensis genome. Genome Res. 2002, 12, 689-700. (Pubitemid 34546457)
14. Wang, J., Xue, Y., Feng, X., Li, X. et al., An analysis of the proteomic profile for Thermoanaerobacter tengcongensis under optimal culture conditions. Proteomics 2004, 4, 136-150. (Pubitemid 38140881)
15. Wang, J., Zhao, C., Meng, B., Xie, J. et al., The proteomic alterations of Thermoanaerobacter tengcongensis cultured at different temperatures. Proteomics 2007, 7, 1409-1419. (Pubitemid 46775875)
16. Meng, B., Wang, J. Q., Li, N., Ma, Y., Liu, S. Q., Dynamic analysis of the heat shock protein 60 and its gene expression in Thermoanaerobacter tengcongensis induced by temperature increase. Wei Sheng Wu Xue Bao 2006, 46, 269-274.
17. Choi-Rhee, E., Cronan, J. E., The biotin carboxylase- biotin carboxyl carrier protein complex of Escherichia coli acetyl-CoA carboxylase. J. Biol. Chem. 2003, 278, 30806-30812.
18. Horlacher, R., Xavier, K. B., Santos, H., DiRuggiero, J. et al., Archaeal binding protein-dependent ABC transporter: molecular and biochemical analysis of the trehalose/maltose transport system of the hyperthermophilic archaeon Thermococcus litoralis. J. Bacteriol. 1998, 180, 680-689. (Pubitemid 28100554)
19. Liu, X., Gong, X., Hicks, D. B., Krulwich, T.A. et al., Interaction between cytochrome caa3 and F1F0-ATP synthase of alkaliphilic Bacillus pseudofirmus OF4 is demonstrated by saturation transfer electron paramagnetic resonance and differential scanning calorimetry assays. Biochemistry 2007, 46, 306-313. (Pubitemid 46067759)
20. Liberek, K., Lewandowska, A., Zietkiewicz, S., Chaperones in control of protein disaggregation. EMBO J. 2008, 27, 328-335. (Pubitemid 351161659)
21. Taguchi, H., Chaperonin GroEL meets the substrate protein as a "load" of the rings. J. Biochem. 2005, 137, 543-549.
22. Houry, W. A., Frishman, D., Eckerskorn, C., Lottspeich, F., Hartl, F. U., Identification of in vivo substrates of the chaperonin GroEL. Nature 1999, 402, 147-154.
23. Kerner, M. J., Naylor, D. J., Ishihama, Y., Maier, T. et al., Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell 2005, 122, 209-220. (Pubitemid 41032985)
24. Klunker, D., Haas, B., Hirtreiter, A., Figueiredo, L. et al., Coexistence of group I and group II chaperonins in the archaeon Methanosarcina mazei. J. Biol. Chem. 2003, 278, 33256-33267.
25. Haslbeck, M., sHsps and their role in the chaperone network. Cell. Mol. Life Sci. 2002, 59, 1649-1657.
26. Friedrich, K. L., Giese, K. C., Buan, N. R., Vierling, E., Interactions between small heat shock protein subunits and substrate in small heat shock protein-substrate complexes. J. Biol. Chem. 2004, 279, 1080-1089.
27. Kudlicki, W., Coffman, A., Kramer, G., Hardesty, B., Renaturation of rhodanese by translational elongation factor (EF) Tu. Protein refolding by EF-Tu flexing. J. Biol. Chem. 1997, 272, 32206-32210.
28. Han, K. Y., Song, J. A., Ahn, K. Y., Park, J. S. et al., Enhanced solubility of heterologous proteins by fusion expression using stress-induced Escherichia coli protein Tsf. FEMS Microbiol. Lett. 2007, 274, 132-138.
29. Treptow, N. A., Shuman, H. A., Allele-specific malE mutations that restore interactions between maltose-binding protein and the inner-membrane components of the maltose transport system. J. Mol. Biol. 1988, 202, 809-822.
30. Kapust, R. B., Waugh, D. S., Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused. Protein Sci. 1999, 8, 1668-1674. (Pubitemid 29379949)
31. Friedrich, T., Bottcher, B., The gross structure of the respiratory complex I: a Lego System. Biochim. Biophys. Acta 2004, 1608, 1-9.
32. Braun, M., Bungert, S., Friedrich, T., Characterization of the overproduced NADH dehydrogenase fragment of the NADH: ubiquinone oxidoreductase (complex I) from Escherichia coli. Biochemistry 1998, 37, 1861-1867. (Pubitemid 28099808)