-
1
-
-
0003328368
-
Evidence for large domains of similarly expressed genes in the Drosophila genome
-
12144710. 10.1186/1475-4924-1-5
-
Evidence for large domains of similarly expressed genes in the Drosophila genome. PT Spellman GM Rubin, J Biol 2002 1 5 12144710 10.1186/1475-4924-1-5
-
(2002)
J Biol
, vol.1
, pp. 5
-
-
Spellman, P.T.1
Rubin, G.M.2
-
2
-
-
0037069672
-
Large clusters of co-expressed genes in the Drosophila genome
-
DOI 10.1038/nature01216
-
Large clusters of co-expressed genes in the Drosophila genome. AM Boutanaev AI Kalmykova YY Shevelyov DI Nurminsky, Nature 2002 420 666 669 12478293 10.1038/nature01216 (Pubitemid 36764497)
-
(2002)
Nature
, vol.420
, Issue.6916
, pp. 666-669
-
-
Boutanaev, A.M.1
Kalmykova, A.I.2
Shevelyov, Y.Y.3
Nurminsky, D.I.4
-
3
-
-
0037194732
-
Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans
-
12214599
-
Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. PJ Roy JM Stuart J Lund SK Kim, Nature 2002 418 975 979 12214599
-
(2002)
Nature
, vol.418
, pp. 975-979
-
-
Roy, P.J.1
Stuart, J.M.2
Lund, J.3
Kim, S.K.4
-
4
-
-
0141854009
-
The human transcriptome map reveals extremes in gene dentistry, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
-
DOI 10.1101/gr.1649303
-
The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. R Versteeg BD van Schaik MF van Batenburg M Roos R Monajemi H Caron HJ Bussemaker AH van Kampen, Genome Res 2003 13 1998 2004 12915492 10.1101/gr.1649303 (Pubitemid 37161757)
-
(2003)
Genome Research
, vol.13
, Issue.9
, pp. 1998-2004
-
-
Versteeg, R.1
Van Schaik, B.D.C.2
Van Batenburg, M.F.3
Roos, M.4
Monajemi, R.5
Caron, H.6
Bussemaker, H.J.7
Van Kampen, A.H.C.8
-
5
-
-
33745416080
-
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
-
DOI 10.1038/nmeth890, PII N890
-
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. PJ Sabo MS Kuehn R Thurman BE Johnson EM Johnson C Hua Y Man E Rosenzweig J Goldy A Haydock M Weaver A Shafer K Lee F Neri R Humbert MA Singer TA Richmond M O Dorschner M McArthur M Hawrylycz RD Green PA Navas WS Noble JA Stamatoyannopoulos, Nature Methods 2006 3 511 518 16791208 10.1038/nmeth890 (Pubitemid 43941768)
-
(2006)
Nature Methods
, vol.3
, Issue.7
, pp. 511-518
-
-
Sabo, P.J.1
Kuehn, M.S.2
Thurman, R.3
Johnson, B.E.4
Johnson, E.M.5
Cao, H.6
Yu, M.7
Rosenzweig, E.8
Goldy, J.9
Haydock, A.10
Weaver, M.11
Shafer, A.12
Lee, K.13
Neri, F.14
Humbert, R.15
Singer, M.A.16
Richmond, T.A.17
Dorschner, M.O.18
McArthur, M.19
Hawrylycz, M.20
Green, R.D.21
Navas, P.A.22
Noble, W.S.23
Stamatoyannopoulos, J.A.24
more..
-
6
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
DOI 10.1038/nature05874, PII NATURE05874
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. E Birney JA Stamatoyannopoulos A Dutta R Guigo TR Gingeras EH Margulies ZP Weng M Snyder ET Dermitzakis JA Stamatoyannopoulos RE Thurman MS Kuehn CM Taylor S Neph CM Koch S Asthana A Malhotra I Adzhubei JA Greenbaum RM Andrews P Flicek PJ Boyle H Cao NP Carter GK Clelland S Davis N Day P Dhami SC Dillon MO Dorschner H Fiegler PG Giresi J Goldy M Hawrylycz A Haydock R Humbert KD James BE Johnson EM Johnson TT Frum ER Rosenzweig N Karnani K Lee GC Lefebvre PA Navas F Neri SCJ Parker PJ Sabo R Sandstrom A Shafer D Vetrie M Weaver S Wilcox M Yu FS Collins J Dekker JD Lieb TD Tullius GE Crawford S Sunyaev WS Noble I Dunham A Dutta R Guigo F Denoeud A Reymond P Kapranov J Rozowsky DY Zheng R Castelo A Frankish J Harrow S Ghosh A Sandelin IL Hofacker R Baertsch D Keefe P Flicek S Dike J Cheng HA Hirsch EA Sekinger J Lagarde JF Abril A Shahab C Flamm C Fried J Hackermuller J Hertel M Lindemeyer K Missal A Tanzer S Washietl J Korbel O Emanuelsson JS Pedersen N Holroyd R Taylor D Swarbreck N Matthews MC Dickson DJ Thomas MT Weirauch J Gilbert J Drenkow I Bell X Zhao KG Srinivasan WK Sung HS Ooi KP Chiu S Foissac T Alioto M Brent L Pachter ML Tress A Valencia SW Choo CY Choo C Ucla C Manzano C Wyss E Cheung TG Clark JB Brown M Ganesh S Patel H Tammana J Chrast CN Henrichsen C Kai J Kawai U Nagalakshmi JQ Wu Z Lian J Lian P Newburger XQ Zhang P Bickel JS Mattick P Carninci Y Hayashizaki S Weissman ET Dermitzakis EH Margulies T Hubbard RM Myers J Rogers PF Stadler TM Lowe CL Wei YJ Ruan M Snyder E Birney K Struhl M Gerstein SE Antonarakis TR Gingeras JB Brown P Flicek YT Fu D Keefe E Birney F Denoeud M Gerstein ED Green P Kapranov U Karaoz RM Myers WS Noble A Reymond J Rozowsky K Struhl A Siepel JA Stamatoyannopoulos CM Taylor J Taylor RE Thurman TD Tullius S Washietl DY Zheng LA Liefer KA Wetterstrand PJ Good EA Feingold MS Guyer FS Collins EH Margulies GM Cooper G Asimenos DJ Thomas CN Dewey A Siepel E Birney D Keefe MM Hou J Taylor S Nikolaev JI Montoya-Burgos A Loytynoja S Whelan F Pardi T Massingham JB Brown HY Huang NR Zhang P Bickel I Holmes JC Mullikin A Ureta-Vidal B Paten M Seringhaus D Church K Rosenbloom WJ Kent EA Stone M Gerstein SE Antonarakis S Batzoglou N Goldman RC Hardison D Haussler W Miller L Pachter ED Green A Sidow ZP Weng ND Trinklein YT Fu ZDD Zhang U Karaoz L Barrera R Stuart DY Zheng S Ghosh P Flicek DC King J Taylor A Ameur S Enroth MC Bieda CM Koch HA Hirsch CL Wei J Cheng J Kim AA Bhinge PG Giresi N Jiang J Liu F Yao WK Sung KP Chiu VB Vega CWH Lee P Ng A Shahab EA Sekinger A Yang Z Moqtaderi Z Zhu XQ Xu S Squazzo MJ Oberley D Inman MA Singer TA Richmond KJ Munn A Rada-Iglesias O Wallerman J Komorowski GK Clelland S Wilcox SC Dillon RM Andrews JC Fowler P Couttet KD James GC Lefebvre AW Bruce OM Dovey PD Ellis P Dhami CF Langford NP Carter D Vetrie P Kapranov DA Nix I Bell S Patel J Rozowsky G Euskirchen S Hartman J Lian JQ Wu AE Urban P Kraus S Van Calcar N Heintzman TH Kim K Wang CX Qu G Hon R Luna CK Glass MG Rosenfeld SF Aldred SJ Cooper A Halees JM Lin HP Shulha XL Zhang MS Xu JNS Haidar Y Yu E Birney S Weissman YJ Ruan JD Lieb VR Iyer RD Green TR Gingeras C Wadelius I Dunham K Struhl RC Hardison M Gerstein PJ Farnham RM Myers B Ren M Snyder DJ Thomas K Rosenbloom RA Harte AS Hinrichs H Trumbower H Clawson J Hillman-Jackson AS Zweig K Smith A Thakkapallayil G Barber RM Kuhn D Karolchik D Haussler WJ Kent ET Dermitzakis L Armengol CP Bird TG Clark GM Cooper PIW de Bakker AD Kern N Lopez-Bigas JD Martin BE Stranger DJ Thomas A Woodroffe S Batzoglou E Davydov A Dimas E Eyras IB Hallgrimsdottir RC Hardison J Huppert A Sidow J Taylor H Trumbower MC Zody R Guigo JC Mullikin GR Abecasis X Estivill E Birney GG Bouffard XB Guan NF Hansen JR Idol VVB Maduro B Maskeri JC McDowell M Park PJ Thomas AC Young RW Blakesley DM Muzny E Sodergren DA Wheeler KC Worley HY Jiang GM Weinstock RA Gibbs T Graves R Fulton ER Mardis RK Wilson M Clamp J Cuff S Gnerre DB Jaffe JL Chang K Lindblad-Toh ES Lander M Koriabine M Nefedov K Osoegawa Y Yoshinaga BL Zhu PJ de Jong, Nature 2007 447 799 816 17571346 10.1038/nature05874 (Pubitemid 46920138)
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
Kuehn, M.S.11
Taylor, C.M.12
Neph, S.13
Koch, C.M.14
Asthana, S.15
Malhotra, A.16
Adzhubei, I.17
Greenbaum, J.A.18
Andrews, R.M.19
Flicek, P.20
Boyle, P.J.21
Cao, H.22
Carter, N.P.23
Clelland, G.K.24
Davis, S.25
Day, N.26
Dhami, P.27
Dillon, S.C.28
Dorschner, M.O.29
Fiegler, H.30
Giresi, P.G.31
Goldy, J.32
Hawrylycz, M.33
Haydock, A.34
Humbert, R.35
James, K.D.36
Johnson, B.E.37
Johnson, E.M.38
Frum, T.T.39
Rosenzweig, E.R.40
Karnani, N.41
Lee, K.42
Lefebvre, G.C.43
Navas, P.A.44
more..
-
7
-
-
33751505540
-
DNA methylation profiling of human chromosomes 6, 20 and 22
-
DOI 10.1038/ng1909, PII NG1909
-
DNA methylation profiling of human chromosomes 6, 20 and 22. F Eckhardt J Lewin R Cortese VK Rakyan J Attwood M Burger J Burton TV Cox R Davies TA Down C Haefliger R Horton K Howe DK Jackson J Kunde C Koenig J Liddle D Niblett T Otto R Pettett S Seemann C Thompson T West J Rogers A Olek K Berlin S Beck, Nature Genetics 2006 38 1378 1385 17072317 10.1038/ng1909 (Pubitemid 44837559)
-
(2006)
Nature Genetics
, vol.38
, Issue.12
, pp. 1378-1385
-
-
Eckhardt, F.1
Lewin, J.2
Cortese, R.3
Rakyan, V.K.4
Attwood, J.5
Burger, M.6
Burton, J.7
Cox, T.V.8
Davies, R.9
Down, T.A.10
Haefliger, C.11
Horton, R.12
Howe, K.13
Jackson, D.K.14
Kunde, J.15
Koenig, C.16
Liddle, J.17
Niblett, D.18
Otto, T.19
Pettett, R.20
Seemann, S.21
Thompson, C.22
West, T.23
Rogers, J.24
Olek, A.25
Berlin, K.26
Beck, S.27
more..
-
8
-
-
20044384522
-
Mapping of genetic and epigenetic regulatory networks using microarrays
-
DOI 10.1038/ng1559
-
Mapping of genetic and epigenetic regulatory networks using microarrays. B van Steensel, Nature Genetics 2005 37 18 S24 15920525 10.1038/ng1559 (Pubitemid 40770399)
-
(2005)
Nature Genetics
, vol.37
, Issue.6 SUPPL.
-
-
Van Steensel, B.1
-
9
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
10471496. 10.1038/14385
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays. JR Pollack CM Perou AA Alizadeh MB Eisen A Pergamenschikov CF Williams SS Jeffrey D Botstein PO Brown, Nature Genetics 1999 23 41 46 10471496 10.1038/14385
-
(1999)
Nature Genetics
, vol.23
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Pergamenschikov, A.5
Williams, C.F.6
Jeffrey, S.S.7
Botstein, D.8
Brown, P.O.9
-
10
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
DOI 10.1073/pnas.012025199
-
Large-scale analysis of the human and mouse transcriptomes. AI Su MP Cooke KA Ching Y Hakak JR Walker T Wiltshire AP Orth RG Vega LM Sapinoso A Moqrich A Patapoutian GM Hampton PG Schultz JB Hogenesch, Proceedings of the National Academy of Sciences of the United States of America 2002 99 4465 4470 11904358 10.1073/pnas.012025199 (Pubitemid 34286008)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.7
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutian, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
-
11
-
-
20144376345
-
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
-
DOI 10.1093/bioinformatics/bti042
-
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. I Yanai H Benjamin M Shmoish V Chalifa-Caspi M Shklar R Ophir A Bar-Even S Horn-Saban M Safran E Domany D Lancet O Shmueli, Bioinformatics 2005 21 650 659 15388519 10.1093/ bioinformatics/bti042 (Pubitemid 40424791)
-
(2005)
Bioinformatics
, vol.21
, Issue.5
, pp. 650-659
-
-
Yanai, I.1
Benjamin, H.2
Shmoish, M.3
Chalifa-Caspi, V.4
Shklar, M.5
Ophir, R.6
Bar-Even, A.7
Horn-Saban, S.8
Safran, M.9
Domany, E.10
Lancet, D.11
Shmueli, O.12
-
13
-
-
33645331577
-
The promise of a virtual lab in drug discovery
-
16580600. 10.1016/S1359-6446(05)03680-9
-
The promise of a virtual lab in drug discovery. H Rauwerda M Roos BO Hertzberger TM Breit, Drug Discovery Today 2006 11 228 236 16580600 10.1016/S1359-6446(05)03680-9
-
(2006)
Drug Discovery Today
, vol.11
, pp. 228-236
-
-
Rauwerda, H.1
Roos, M.2
Hertzberger, B.O.3
Breit, T.M.4
-
14
-
-
0035691938
-
The low down on e-science and grids for biology
-
DOI 10.1002/cfg.115
-
The low down on e-science and grids for biology. C Goble, Comparative and Functional Genomics 2001 2 365 370 10.1002/cfg.115 (Pubitemid 34083158)
-
(2001)
Comparative and Functional Genomics
, vol.2
, Issue.6
, pp. 365-370
-
-
Goble, C.1
-
15
-
-
33646549540
-
New challenges facing integrative biological science in the post-genomic era
-
DOI 10.1142/S0218339006001805, PII S0218339006001805
-
New challenges facing integrative biological science in the post-genomic era. CS Oehmen TP Straatsma GA Anderson G Orr BJM Webb-Robertson RC Taylor RW Mooney DJ Baxter DR Jones DA Dixon, Journal of Biological Systems 2006 14 275 293 10.1142/S0218339006001805 (Pubitemid 43725854)
-
(2006)
Journal of Biological Systems
, vol.14
, Issue.2
, pp. 275-293
-
-
Oehmen, C.S.1
Straatsma, T.P.2
Anderson, G.A.3
Orr, G.4
Webb-Robertson, B.-J.M.5
Taylor, R.C.6
Mooney, R.W.7
Baxter, D.J.8
Jones, D.R.9
Dixon, D.A.10
-
17
-
-
36448963071
-
A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data
-
DOI 10.1093/bioinformatics/btm461
-
A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. LJG Post M Roos MS Marshall R van Driel TM Breit, Bioinformatics 2007 23 3080 3087 17881406 10.1093/bioinformatics/btm461 (Pubitemid 350162874)
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3080-3087
-
-
Post, L.J.G.1
Roos, M.2
Marshall, S.M.3
Van Driel, R.4
Breit, T.M.5
-
18
-
-
33646040949
-
Scientific workflow management and the Kepler system
-
DOI 10.1002/cpe.994
-
Scientific workflow management and the Kepler system. B Ludascher I Altintas C Berkley D Higgins E Jaeger M Jones EA Lee J Tao Y Zhao, Concurrency and Computation-Practice & Experience 2006 18 1039 1065 10.1002/cpe.994 (Pubitemid 44258497)
-
(2006)
Concurrency Computation Practice and Experience
, vol.18
, Issue.10
, pp. 1039-1065
-
-
Ludascher, B.1
Altintas, I.2
Berkley, C.3
Higgins, D.4
Jaeger, E.5
Jones, M.6
Lee, E.A.7
Tao, J.8
Zhao, Y.9
-
19
-
-
33747833111
-
Taverna: A tool for building and running workflows of services
-
DOI 10.1093/nar/gkl320
-
Taverna: a tool for building and running workflows of services. D Hull K Wolstencroft R Stevens C Goble MR Pocock P Li T Oinn, Nucleic Acids Research 2006 34 729 W732 16845108 10.1093/nar/gkl320 (Pubitemid 44529867)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
Pocock, M.R.5
Li, P.6
Oinn, T.7
-
20
-
-
36048947329
-
VLAM-G: Interactive Dataflow Driven Engine for Grid-enabled Resources
-
VLAM-G: Interactive Dataflow Driven Engine for Grid-enabled Resources. V Korkhov D Vasunin A Wibisono ASZ Belloum MA Inda M Roos T Breit BLO Hertzberger, Scientific Programming 2007 15 173 188
-
(2007)
Scientific Programming
, vol.15
, pp. 173-188
-
-
Korkhov, V.1
Vasunin, D.2
Wibisono, A.3
Belloum, A.S.Z.4
Inda, M.A.5
Roos, M.6
Breit, T.7
Hertzberger, B.L.O.8
-
21
-
-
77955822620
-
-
WS-VLAM. http://www.science.uva.nl/∼gvlam/wsvlam
-
WS-VLAM
-
-
-
24
-
-
34548087632
-
MyExperiment: Social networking for workflow-using e-scientists
-
ACM Press
-
myExperiment: social networking for workflow-using e-scientists. C Goble DCD Roure, Proceedings of the 2nd workshop on Workflows in support of large-scale science; June 25, 2007; Monterey, California, USA ACM Press 2007 1 2
-
(2007)
Proceedings of the 2nd Workshop on Workflows in Support of Large-scale Science; June 25, 2007; Monterey, California, USA
, pp. 1-2
-
-
Goble, C.1
Roure, D.C.D.2
|