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Volumn 543, Issue , 2009, Pages 389-402

Ultraviolet crosslinking of DNA-protein complexes via 8-azidoadenine

Author keywords

8 azido 2 deoxyadenosine 5 triphosphate; DNA protein crosslinks; Nick translation; Photoaffinity crosslinking; tet Operator; Tet repressor

Indexed keywords

8 AZIDO 2' DEOXYADENOSINE 5' TRIPHOSPHATE; 8 AZIDOADENINE; 8-AZIDO-2'-DEOXYADENOSINE-5'-TRIPHOSPHATE; 8-AZIDOADENINE; ADENINE; ADENINE NUCLEOTIDE; AZIDE; CROSS LINKING REAGENT; DEOXYADENOSINE PHOSPHATE; DNA; DRUG DERIVATIVE; IMINE; PHENYLNITRENE; PROTEIN;

EID: 67649122100     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-015-1_24     Document Type: Article
Times cited : (2)

References (37)
  • 2
    • 0011217347 scopus 로고
    • Photogenerated reagents in biochemistry and molecular biology
    • ( Work, T.S. and Burdon, R.H., eds.) Elsevier, Amsterdam
    • Bayley, H. (1983). Photogenerated reagents in biochemistry and molecular biology. In Laboratory Techniques in Biochemistry, vol.12 ( Work, T.S. and Burdon, R.H., eds.) Elsevier, Amsterdam.
    • (1983) Laboratory Techniques in Biochemistry , vol.12
    • Bayley, H.1
  • 3
    • 26544471933 scopus 로고
    • Photoaffinity labeling and photoaffinity crosslinking of enzymes
    • ( Eyzaguirre, J., ed.), Ellis Horwood, Chichester, UK
    • Schäfer, H. J. (1987). Photoaffinity labeling and photoaffinity crosslinking of enzymes. In Chemical Modifications of Enzymes, Active Site Studies ( Eyzaguirre, J., ed.), Ellis Horwood, Chichester, UK, pp. 45-62.
    • (1987) Chemical Modifications of Enzymes, Active Site Studies , pp. 45-62
    • Schäfer, H.J.1
  • 4
    • 0012607974 scopus 로고
    • Dose dependent decrease in extractability of DNA from bacteria (by UV-light)
    • Smith, K. C. (1962). Dose dependent decrease in extractability of DNA from bacteria (by UV-light). Biochem. Biophys. Res. Commun. 8, 157-163.
    • (1962) Biochem. Biophys. Res. Commun. , vol.8 , pp. 157-163
    • Smith, K.C.1
  • 5
    • 0000201391 scopus 로고
    • Cross-linking of proteins to nucleic acids by UV-light
    • Shetlar, M. D. (1980). Cross-linking of proteins to nucleic acids by UV-light. Photochem. Photobiol. Rev. 5, 105-197.
    • (1980) Photochem. Photobiol. Rev. , vol.5 , pp. 105-197
    • Shetlar, M.D.1
  • 7
    • 0022543392 scopus 로고
    • Study of several factors in RNA-protein cross-link formation induced by ionizing radiations within 70S ribosomes of E. coli MRE 600
    • Ekert, B., Giocanti, N., and Sabattier, R. (1986). Study of several factors in RNA-protein crosslink formation induced by ionizing radiations within 70 S ribosomes of E. coli MRE 600. Int. J. Radiat. Biol. 50, 507-525. (Pubitemid 16049042)
    • (1986) International Journal of Radiation Biology , vol.50 , Issue.3 , pp. 507-525
    • Ekert, B.1    Giocanti, N.2    Sabattier, R.3
  • 10
    • 0021240701 scopus 로고
    • Cross-linking of DNA in liver and testes of rats fed 1,3-propanediol
    • DOI 10.1016/0009-2797(84)90134-0
    • Summerfield, F. W. and Tappel, A. L. (1984). Cross-linking of DNA in liver and testis of rats fed 1,3-propanediol. Chem. Biol. Interact. 50, 87-96. (Pubitemid 14124175)
    • (1984) Chemico-Biological Interactions , vol.50 , Issue.1 , pp. 87-96
    • Summerfield, F.W.1    Tappel, A.L.2
  • 12
    • 0016382053 scopus 로고
    • Photochemical attachment of lac repressor to bro-modeoxyuridine- substituted lac operator by UV radiation
    • Lin, S. Y. and Riggs, A. D. (1974). Photochemical attachment of lac repressor to bro-modeoxyuridine-substituted lac operator by UV radiation. Proc. Natl. Acad. Sci. U S A 71, 947-951.
    • (1974) Proc. Natl. Acad. Sci. U S A , vol.71 , pp. 947-951
    • Lin, S.Y.1    Riggs, A.D.2
  • 13
    • 0347358350 scopus 로고
    • 5-Azido-2'-deoxyuridine 5'-triphosphate: A photoaffinity-labeling reagent and tool for the enzymatic synthesis of photoactive DNA
    • DOI 10.1073/pnas.83.15.5382
    • Evans, R. K., Johnson, J. D., and Haley, B. E. (1986). 5-Azido-2 ¢ -deoxyuridine-5 ¢ -triphosphate: a photoaffinity labeling reagent and tool for the enzymatic synthesis of photoactive DNA. Proc. Natl. Acad. Sci. U S A 83, 5382-5386. (Pubitemid 16001226)
    • (1986) Proceedings of the National Academy of Sciences of the United States of America , vol.83 , Issue.15 , pp. 5382-5386
    • Evans, R.K.1    Johnson, J.D.2    Haley, B.E.3
  • 14
    • 0025291547 scopus 로고
    • The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent
    • Bartholomew, B., Kassavetis, G. A., Braun, B. R., and Geiduschek, E. P. (1990). The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent. EMBO J. 9, 2197-2205.
    • (1990) EMBO J. , vol.9 , pp. 2197-2205
    • Bartholomew, B.1    Kassavetis, G.A.2    Braun, B.R.3    Geiduschek, E.P.4
  • 15
    • 0026047741 scopus 로고
    • Contacts between 5 S DNA and xenopus TFIIIA identified using 5-azido-2′-deoxyuridine-substituted DNA
    • Lee, D. K., Evans, R. K., Blanco, J., Gottesfeld, J., and Johnson, J. D. (1991). Contacts between 5 S DNA and Xenopus TFIIIA identified using 5-azido-2 ¢ -deoxyuridine-substituted DNA. J. Biol. Chem. 266, 16478-16484. (Pubitemid 21907824)
    • (1991) Journal of Biological Chemistry , vol.266 , Issue.25 , pp. 16478-16484
    • Lee, D.K.1    Evans, R.K.2    Blanco, J.3    Gottesfeld, J.4    Johnson, J.D.5
  • 16
    • 0026782249 scopus 로고
    • Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinking
    • Blatter, E. E., Ebright, Y. W., and Ebright, R. H. (1992). Identification of an amino acid-base contact in the GCN4-DNA complex by bromouracil-mediated photocrosslinking. Nature 83, 650-652.
    • (1992) Nature , vol.83 , pp. 650-652
    • Blatter, E.E.1    Ebright, Y.W.2    Ebright, R.H.3
  • 17
    • 0027717964 scopus 로고
    • Photocrosslinking of 5-iodouracil-substituted RNA and DNA to proteins
    • Willis, M. C., Hicke, B. J., Uhlenbeck, O. C., Cech, T. R., and Koch, T. H. (1993). Photocrosslinking of 5-iodouracil-substituted RNA and DNA to proteins. Science 262, 1255-1257. (Pubitemid 24036089)
    • (1993) Science , vol.262 , Issue.5137 , pp. 1255-1257
    • Willis, M.C.1    Hicke, B.J.2    Uhlenbeck, O.C.3    Cech, T.R.4    Koch, T.H.5
  • 18
    • 0028323417 scopus 로고
    • Telomeric protein-DNA point contacts identified by photo-cross-linking using 5-bromodeoxyuridine
    • Hicke, B. J., Willis, M. C., Koch, T. H., and Cech, T. R. (1994). Telomeric protein-DNA point contacts identified by photo-cross-linking using 5-bromodeoxyuridine. Biochemistry 33, 3364-3373. (Pubitemid 24112651)
    • (1994) Biochemistry , vol.33 , Issue.11 , pp. 3364-3373
    • Hicke, B.J.1    Willis, M.C.2    Koch, T.H.3    Cech, T.R.4
  • 19
    • 33644833711 scopus 로고    scopus 로고
    • Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: A case study using the restriction endonuclease SsoII
    • DOI 10.1039/b503091a
    • Pingoud, V., Geyer, H., Geyer, R., Kubareva, E., Bujnicki, J. M., and Pingoud, A. (2005). Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease Ssoll. Mol. Biosyst. 1, 135-141. (Pubitemid 43362239)
    • (2005) Molecular BioSystems , vol.1 , Issue.2 , pp. 135-141
    • Pingoud, V.1    Geyer, H.2    Geyer, R.3    Kubareva, E.4    Bujnicki, J.M.5    Pingoud, A.6
  • 20
    • 0028291635 scopus 로고
    • Probing close DNA contacts of RNA polymerase III transcription complexes with the photoactive nucleoside 4-thiodeoxythymidine
    • Bartholomew, B., Braun, B. R., Kassavetis, G. A., and Geiduschek, E. P. (1994). Probing close DNA contacts of RNA-polymerase III transcription complexes with the photoactive nucleoside 4-thiodeoxythymidine. J. Biol. Chem. 269, 18090-18095. (Pubitemid 24206207)
    • (1994) Journal of Biological Chemistry , vol.269 , Issue.27 , pp. 18090-18095
    • Bartholomew, B.1    Braun, B.R.2    Kassavetis, G.A.3    Geiduschek, E.P.4
  • 21
    • 12344296411 scopus 로고    scopus 로고
    • A new highly efficient photoreactive analogue of dCTP. Synthesis, characterization, and application in photoaffinity modification of DNA binding proteins
    • DOI 10.1021/bc0497867
    • Dezhurov, S. V., Khodyreva, S. N., Plekhanova, E. S., and Lavrik, O. I. (2005). A new highly efficient photoreactive analogue of dCTP. Synthesis, characterization, and application in photoaffinity modification of DNA binding proteins. Bioconjug. Chem. 16, 215-222. (Pubitemid 40129696)
    • (2005) Bioconjugate Chemistry , vol.16 , Issue.1 , pp. 215-222
    • Dezhurov, S.V.1    Khodyreva, S.N.2    Plekhanova, E.S.3    Lavrik, O.I.4
  • 22
    • 33947113402 scopus 로고    scopus 로고
    • Crosslinking of the NER damage recognition proteins XPC-HR23B, XPA and RPA to photoreactive probes that mimic DNA damages
    • DOI 10.1016/j.bbagen.2007.01.007, PII S030441650700030X
    • Maltseva, E. A., Rechkunova, N. I., Gillet, L. C., Petruseva, I. O., Schärer, O. D., and Lavrik, O. I. (2007). Crosslinking of the NER damage recognition proteinsXPC-HR23B, XPA and RPA to photoreactive probes that mimic DNA damages. Biochim. Biophys. Acta 1770, 781-789. (Pubitemid 46412638)
    • (2007) Biochimica et Biophysica Acta - General Subjects , vol.1770 , Issue.5 , pp. 781-789
    • Maltseva, E.A.1    Rechkunova, N.I.2    Gillet, L.C.3    Petruseva, I.O.4    Scharer, O.D.5    Lavrik, O.I.6
  • 23
    • 0034327374 scopus 로고    scopus 로고
    • Two novel dATP analogs for DNA photoaffinity labeling
    • Zofall, M. and Bartholomew, B. (2000). Two novel dATP analogs for DNA photoaffinity labeling. Nucleic Acids Res. 28, 4382-4390.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4382-4390
    • Zofall, M.1    Bartholomew, B.2
  • 24
    • 0023761626 scopus 로고
    • UV-induced cross-linking of proteins to plasmid pBR322 containing 8-azidoadenine 2'-deoxyribonucleotides
    • DOI 10.1016/0014-5793(88)80914-1
    • Meffert, R. and Dose, K. (1988). UV-induced cross-linking of proteins to plasmid pBR322 containing 8-azidoadenine 2 ¢ -deoxyribonu-cleotides. FEBS Lett. 239, 190-194. (Pubitemid 18263447)
    • (1988) FEBS Letters , vol.239 , Issue.2 , pp. 190-194
    • Meffert, R.1    Dose, K.2
  • 25
    • 0025049443 scopus 로고
    • UV-induced cross-linking of Tet repressor to DNA containing tet operator sequences and 8-azidoadenines
    • Meffert, R., Rathgeber, G., Schäfer, H.-J., and Dose, K. (1990). UV-induced cross-linking of Tet repressor to DNA containing tet operator sequences and 8-azidoadenines. Nucleic Acids Res. 18, 6633-6636.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6633-6636
    • Meffert, R.1    Rathgeber, G.2    Schäfer, H.-J.3    Dose, K.4
  • 26
    • 0028829592 scopus 로고
    • Photochemical cross-linking assay for DNA tracking by replication proteins
    • Bartholomew, B., Tinker, R. L., Kassavetis, G. A., and Geiduschek, E. P. (1995). Photochemical cross-linking assay for DNA tracking by replication proteins. Methods Enzymol. 262, 476-494.
    • (1995) Methods Enzymol. , vol.262 , pp. 476-494
    • Bartholomew, B.1    Tinker, R.L.2    Kassavetis, G.A.3    Geiduschek, E.P.4
  • 27
    • 0000712932 scopus 로고
    • 3 ATP: Ein Agens zur Photoaffinitätsmarkierung von ATP-bindenden Proteinen
    • 3 ATP: ein Agens zur Photoaffinitä tsmarkierung von ATP-bindenden Proteinen. Liebigs Ann. Chem. 1978, 1749-1753.
    • (1978) Liebigs Ann. Chem. , vol.1978 , pp. 1749-1753
    • Schäfer, H.J.1    Scheurich, P.2    Dose, K.3
  • 28
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680.
    • (1970) Nature , vol.227 , pp. 680
    • Laemmli, U.K.1
  • 29
    • 84858126444 scopus 로고
    • A unique silver staining procedure for color characterization of polypeptides
    • Adams, L. D. and Sammons, D. W. (1981). A unique silver staining procedure for color characterization of polypeptides. Electrophore-sis 2, 155-165.
    • (1981) Electrophore-sis , vol.2 , pp. 155-165
    • Adams, L.D.1    Sammons, D.W.2
  • 31
    • 0016832046 scopus 로고
    • Properties of UV-light-mediated binding of BSA to DNA
    • Braun, A. and Merrick, B. (1975). Properties of UV-light-mediated binding of BSA to DNA. Photochem. Photobiol. 21, 243-247.
    • (1975) Photochem. Photobiol. , vol.21 , pp. 243-247
    • Braun, A.1    Merrick, B.2
  • 33
    • 0017116029 scopus 로고
    • Interaction of the photoaffinity label 8-azido-ADP with glutamate dehydrogenase
    • Koberstein, R., Cobianchi, L., and Sund, H. (1976). Interaction of the photoaffinity label 8-azido-ADP with glutamate dehydrogenase. FEBS Lett. 64, 176-180.
    • (1976) FEBS Lett. , vol.64 , pp. 176-180
    • Koberstein, R.1    Cobianchi, L.2    Sund, H.3
  • 34
    • 0021891893 scopus 로고
    • Chemical probes of the mitochondrial ATP synthesis and translocation
    • Vignais, P. V. and Lunardi, J. (1985). Chemical probes of the mitochondrial ATP synthesis and translocation. Ann. Rev. Biochem. 54, 977-1014. (Pubitemid 15073669)
    • (1985) Annual Review of Biochemistry , vol.54 , pp. 977-1014
    • Vignais, P.V.1    Lunardi, J.2
  • 35
    • 84858134657 scopus 로고
    • Phd Thesis, University of Wyoming, Laramie, WY
    • Czarnecki, J. J. (1978). Phd Thesis, University of Wyoming, Laramie, WY.
    • (1978)
    • Czarnecki, J.J.1
  • 36
    • 0014670184 scopus 로고
    • Enzymatic synthesis of DNA: Binding of DNA to DNA polymerase
    • Englund, P. T., Kelly, R. B., and Kornberg, A. (1969). Enzymatic synthesis of DNA: binding of DNA to DNA polymerase. J. Biol. Chem. 244, 3045-3052.
    • (1969) J. Biol. Chem. , vol.244 , pp. 3045-3052
    • Englund, P.T.1    Kelly, R.B.2    Kornberg, A.3


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