메뉴 건너뛰기




Volumn 543, Issue , 2009, Pages 121-138

Site-directed cleavage of DNA by protein-Fe(II) EDTA conjugates within model chromatin complexes

Author keywords

Cleavage mapping; EPD; Hydroxyl radical cleavage of DNA; Linker histones; Nucleosomes; Site directed cleavage

Indexed keywords

CYSTEINE; DNA; DRUG DERIVATIVE; EDETIC ACID; EDTA (2 AMINOETHYL 2 PYRIDYL DISULFIDE) FE; EDTA-(2-AMINOETHYL 2-PYRIDYL DISULFIDE)-FE; HYDROXYL RADICAL; PROTEIN; RADIOISOTOPE; RESTRICTION ENDONUCLEASE; SODIUM CHLORIDE;

EID: 67649109219     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-015-1_10     Document Type: Article
Times cited : (1)

References (21)
  • 2
    • 0031106457 scopus 로고    scopus 로고
    • Where is the globular domain of linker histone located on the nucleosome?
    • DOI 10.1016/S0968-0004(97)01013-X, PII S096800049701013X
    • Crane-Robinson C. (1997). Where is the globular domain of linker histone located on the nucleosome?. Trends Biochem Sci 22, 75-77. (Pubitemid 27107856)
    • (1997) Trends in Biochemical Sciences , vol.22 , Issue.3 , pp. 75-77
    • Crane-Robinson, C.1
  • 3
    • 0032563864 scopus 로고    scopus 로고
    • Position and orientation of the globular domain of linker histone H5 on the nucleosome
    • DOI 10.1038/26521
    • Zhou Y. B., Gerchman S. E., Ramakrishnan V., Travers A., and Muyldermans S. (1998). Position and orientation of the globular domain of linker histone H5 on the nucleosome. Nature 395, 402-405. (Pubitemid 28450693)
    • (1998) Nature , vol.395 , Issue.6700 , pp. 402-405
    • Zhou, Y.-B.1    Gerchman, S.E.2    Ramakrishnan, V.3    Travers, A.4    Muyldermans, S.5
  • 5
    • 0037385490 scopus 로고    scopus 로고
    • Structures and interactions of the core histone tail domains
    • DOI 10.1002/bip.10303
    • Zheng C., and Hayes J. J. (2003). Structures and interactions of the core histone tail domains. Biopolymers 68, 539-546. (Pubitemid 36432066)
    • (2003) Biopolymers , vol.68 , Issue.4 , pp. 539-546
    • Zheng, C.1    Hayes, J.J.2
  • 6
    • 0032553013 scopus 로고    scopus 로고
    • Linker histones stabilize the intrinsic salt-dependent folding of nucleosomal arrays: Mechanistic ramifications for higher-order chromatin folding
    • DOI 10.1021/bi981684e
    • Carruthers L. M., Bednar J., Woodcock C. L., and Hansen J. C. (1998). Linker histones stabilize the intrinsic salt-dependent folding of nucleosomal arrays: mechanistic ramifications for higher-order chromatin folding. Biochemistry 37, 14776-14787. (Pubitemid 28487585)
    • (1998) Biochemistry , vol.37 , Issue.42 , pp. 14776-14787
    • Carruthers, L.M.1    Bednar, J.2    Woodcock, C.L.3    Hansen, J.C.4
  • 7
    • 33644800314 scopus 로고    scopus 로고
    • 0 with the nucleosome of native chromatin in vivo
    • DOI 10.1038/nsmb1050, PII N1050
    • Brown D. T., Izard T., and Misteli T. (2006). Mapping the interaction surface of linker histone H1(0) with the nucleosome of native chromatin in vivo. Nat Struct Mol Biol 13, 250-255. (Pubitemid 43348511)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.3 , pp. 250-255
    • Brown, D.T.1    Izard, T.2    Misteli, T.3
  • 8
    • 0026483710 scopus 로고
    • Determination of the orientation of a DNA binding motif in a protein-DNA complex by photocrosslinking
    • Pendergrast P. S., Chen Y., Ebright Y. W., and Ebright R. H. (1992). Determination of the orientation of a DNA binding motif in a protein-DNA complex by photocrosslinking. Proc Natl Acad Sci USA 89, 10287-10291.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10287-10291
    • Pendergrast, P.S.1    Chen, Y.2    Ebright, Y.W.3    Ebright, R.H.4
  • 9
    • 0026766292 scopus 로고
    • Conformation-dependent cleavage of staphlyococcal nuclease with a disulfide-linked iron chelate
    • Ermacora M. R., Delfino J. M., Cuenoud B., Schepartz A., and Fox R. O. (1992). Conformation-dependent cleavage of staphlyococcal nuclease with a disulfide-linked iron chelate. Proc Natl Acad Sci USA 89, 6383-6387.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 6383-6387
    • Ermacora, M.R.1    Delfino, J.M.2    Cuenoud, B.3    Schepartz, A.4    Fox, R.O.5
  • 10
    • 0027302181 scopus 로고
    • Phenyl-azide-mediated photocrosslinking analysis of Cro-DNA interaction
    • DOI 10.1006/jmbi.1993.1162
    • Chen Y., and Ebright R. H. (1993). Phenylazide-mediated photocrosslinking analysis of Cro-DNA interaction. J Mol Biol 230, 453-460. (Pubitemid 23161355)
    • (1993) Journal of Molecular Biology , vol.230 , Issue.2 , pp. 453-460
    • Chen, Y.1    Ebright, R.H.2
  • 11
    • 0029973105 scopus 로고    scopus 로고
    • Anatomy of a flexer-DNA complex inside a higher-order transposition intermediate
    • DOI 10.1016/S0092-8674(00)81241-6
    • Lavoie B. D., Shaw G. S., Millner A., and Chaconas G. (1996). Anatomy of a flexer-DNA complex inside a higher-order transposition intermediate. Cell 85, 761-771. (Pubitemid 26181054)
    • (1996) Cell , vol.85 , Issue.5 , pp. 761-771
    • Lavoie, B.D.1    Shaw, G.S.2    Millner, A.M.3    Chaconas, G.4
  • 12
    • 0029787814 scopus 로고    scopus 로고
    • Site-directed cleavage of DNA by a linker histone-Fe(II) EDTA conjugate: Localization of a globular domain binding site within a nucleosome
    • DOI 10.1021/bi961590+
    • Hayes J. J. (1996). Site-directed cleavage of DNA by a linker histone-Fe(II) EDTA conjugate: localization of a globular domain binding site within a nucleosome. Biochemistry 35, 11931-11937. (Pubitemid 26313662)
    • (1996) Biochemistry , vol.35 , Issue.37 , pp. 11931-11937
    • Hayes, J.J.1
  • 13
    • 0029896213 scopus 로고    scopus 로고
    • Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5
    • Heilek G. M., and Noller H. F. (1996). Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5. Science 272, 1659-1662. (Pubitemid 26200026)
    • (1996) Science , vol.272 , Issue.5268 , pp. 1659-1662
    • Heilek, G.M.1    Noller, H.F.2
  • 14
    • 0029928550 scopus 로고    scopus 로고
    • Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals
    • Flaus A., Luger K., Tan S., and Richmond T. J. (1996). Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proc Natl Acad Sci USA 93, 1370-1375.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 1370-1375
    • Flaus, A.1    Luger, K.2    Tan, S.3    Richmond, T.J.4
  • 15
    • 33745842952 scopus 로고    scopus 로고
    • A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex
    • Miller G., and Hahn S. A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex. Nat Struct Mol Biol 13, 603-610.
    • Nat Struct Mol Biol , vol.13 , pp. 603-610
    • Miller, G.1    Hahn, S.2
  • 16
    • 0033289229 scopus 로고    scopus 로고
    • Site-directed chemical probing of histone-DNA interactions
    • Chafin D. R., Lee K. M., and Hayes J. J. (1999). Site-directed chemical probing of histone-DNA interactions. Methods Mol Biol 119, 27-43.
    • (1999) Methods Mol Biol , vol.119 , pp. 27-43
    • Chafin, D.R.1    Lee, K.M.2    Hayes, J.J.3
  • 17
    • 0023924111 scopus 로고
    • DNA footprinting with hydroxyl radical
    • Tullius T. D. (1988). DNA footprinting with hydroxyl radical. Nature 332, 663-664.
    • (1988) Nature , vol.332 , pp. 663-664
    • Tullius, T.D.1
  • 18
    • 0031148959 scopus 로고    scopus 로고
    • In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins
    • DOI 10.1006/meth.1997.0441
    • Hayes J. J., and Lee K. M. (1997). In vitro reconstitution and analysis of mononucleo-somes containing defined DNAs and proteins. Methods 12, 2-9. (Pubitemid 27226173)
    • (1997) Methods: A Companion to Methods in Enzymology , vol.12 , Issue.1 , pp. 2-9
    • Hayes, J.J.1    Lee, K.-M.2
  • 19
    • 0018435056 scopus 로고
    • A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite
    • Simon R. H. and Felsenfeld G. (1979). A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite. Nucleic Acids Res 6, 689-696.
    • (1979) Nucleic Acids Res , vol.6 , pp. 689-696
    • Simon, R.H.1    Felsenfeld, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.