Analysis of DNA supercoiling induced by DNA-protein interactions

Methods in Molecular Biology

Volumn 543, Issue , 2009, Pages 523-535

  Clark, David J ^a   Leblanc, Benoît ^a  

^a UNIVERSITÉ DE SHERBROOKE   (Canada)

Author keywords

Chloroquine; DNA protein interaction; Supercoiling; Topology

Indexed keywords

PROTEIN;

ARTICLE; CHEMISTRY; CONFORMATION; DNA SUPERCOILING; ELECTROPHORESIS; METABOLISM; METHODOLOGY; MOLECULAR BIOLOGY; NUCLEIC ACID HYBRIDIZATION; PROTEIN BINDING; STANDARD;

DNA, SUPERHELICAL; ELECTROPHORESIS; MOLECULAR BIOLOGY; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; PROTEIN BINDING; PROTEINS; REFERENCE STANDARDS;

EID: 67649107393     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-015-1_30     Document Type: Article

References (8)

1. Simpson, R. T., Thoma, F., and Brubaker, J. M. (1985). Chromatin reconstituted from tandemly repeated cloned DNA fragments and core his-tones: a model system for study of higher order structure. Cell 42, 799-808. (Pubitemid 16083721)
2. Javaherian, K., Liu, J. F., and Wang, J. C. (1978). Nonhistone proteins HMG1 and HMG2 change the DNA helical structure. Science 199, 1345-1346. (Pubitemid 8292505)
3. Bazett-Jones, D. P., Leblanc, B., Herfort, M., and Moss, T. (1994). Short-range DNA looping by the Xenopus HMG-box transcription factor, xUBF. Science 264, 1134-1137. (Pubitemid 24210673)
4. Giese, K., Pagel, J., and Grosschedl, R. (1997). Functional analysis of DNA bending and unwinding by the high mobility group domain of LEF-1. Proc. Natl. Acad. Sci. U S A 94, 12845-12850. (Pubitemid 27518439)
5. Dif fley, J. F. and Stillman, B. (1992). DNA binding properties of an HMG1-related protein from yeast mitochondria. J. Biol. Chem. 267, 3368-3374.
6. Crick, F. H. (1976). Linking numbers and nucleosomes. Proc. Natl. Acad. Sci. U S A 73, 2639-2643.
7. Clark, D. J. (1998). Counting nucleosome cores on circular DNA using topoisomerase I. In Gould. H (ed.) Chromatin: A Practical Approach. Oxford University Press, Oxford.
8. Shure, M., Pulleyblank, D. E., and Vinograd, J. (1977). The problems of eukaryotic and prokaryotic DNA packaging and in vivo conformation posed by superhelix density heterogeneity. Nucleic Acids Res. 4, 1183-1205. (Pubitemid 8102380)