Independent arrays or independent time courses for gene expression time series

Proceedings - IEEE International Symposium on Circuits and Systems

Volumn , Issue , 2005, Pages 5886-5889

  Kim, Sookjeong ^a   Choi, Seungjin ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BEST MATCH; CELL CYCLE; COMPARATIVE STUDIES; GENE CLUSTERING; GENE EXPRESSION DATA; GENE EXPRESSION TIME SERIES; LINEAR MODES; TIME COURSE; YEAST CELL CYCLES;

BIOACTIVITY; CLUSTER ANALYSIS; GENE EXPRESSION; HEMODYNAMICS; TIME SERIES; TIME SERIES ANALYSIS;

INDEPENDENT COMPONENT ANALYSIS;

EID: 67649086240     PISSN: 02714310     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISCAS.2005.1465978     Document Type: Conference Paper

References (10)

1. R. J. Cho, M. J. Campbell, E. A. Winzeler, L. Steinmetz, A. Conway, L. Wodicka, T. G. Wolfsberg, A. E. Gabrielian, D. Landsman, D. J. Lcokhart, and R. W. Davis, "A genome-wide transcriptional analysis of the mitotic cell cycle," Mol. Cell, vol. 2, pp. 65-73, 1998.
2. Gene Ontology Consortium, "Creating the gene ontology resource: Design and implementation," Genome Research, vol. 11, pp. 1425-1433, 2001.
3. S. Lee and S. Batzoglou, "ICA-based clustering of genes from microarray expression data," in Advances in Neural Information Processing Systems, vol. 16. MIT Press, 2004.
4. W. Liebermeister, "Linear modes of gene expression determined by independent component analysis," Bioinformatics, vol. 18, no. 1, pp. 51-60, 2002.
5. M. J. McKeown, T. Jung, S. Makeig, G. Brown, S. S. Kindermann, T. W. Lee, and T. J. Sejnowski, "Spatially independent activity patterns in functional magnetic resonance imaging data during the stroop colornaming task," Proc. Natl. Acad. Sci. USA, vol. 95, pp. 803-810, 1998.
6. T. P. Minka, "Automatic choice of dimensionality for PCA," in Advances in Neural Information Processing Systems, vol. 13. MIT Press, 2001.
7. P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein, and B. Futcher, "Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization," Molecular Biology of the Cell, vol. 9, pp. 3273-3297, Dec. 1998.
8. J. V. Stone, J. Porrill, N. R. Porter, and I. W. Wilkinson, "Spatiotemporal independent component analysis of event-related fmri data using skewed probability density functions," NeuroImage, vol. 15, no. 2, pp. 407-421, 2002.
9. S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, and G. M. Church, "Systematic determination of generic network architecture," Nature Genetics, vol. 22, pp. 281-285, 1999.
10. O. Troyanskaya, M. Cantor, G. Sherlock, P. Brown, T. Hastie, R. Tibshirani, D. Botstein, and R. B. Altman, "Missing value estimation methods for DNA microarrays," Bioinformatics, vol. 17, no. 6, pp. 520-525, 2001.