Development of a reverse transcription multiplex real-time PCR for the detection and genotyping of classical swine fever virus

Journal of Virological Methods

Volumn 160, Issue 1-2, 2009, Pages 111-118

  Huang, Yu Liang ^a,b   Pang, Victor Fei ^b   Pan, Chu Hsiang ^a   Chen, Tsu Han ^a   Jong, Ming Hwa ^a   Huang, Tien Shine ^a   Jeng, Chian Ren ^b  

^a FISHERIES RESEARCH INSTITUTE   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Classical swine fever virus; Genotyping; Reverse transcription multiplex real time PCR

Indexed keywords

SUBUNIT VACCINE;

3' UNTRANSLATED REGION; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; GENOTYPE; INTERMETHOD COMPARISON; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; PESTIVIRUS; PRIORITY JOURNAL; PROCESS DEVELOPMENT; REAL TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY ANALYSIS; SENSITIVITY AND SPECIFICITY; SWINE; SWINE DISEASE; VIRAL GENETICS; VIREMIA; VIRUS DETECTION; VIRUS ISOLATION; VIRUS STRAIN; WILD TYPE;

3' UNTRANSLATED REGIONS; ANIMALS; CLASSICAL SWINE FEVER; CLASSICAL SWINE FEVER VIRUS; DNA PRIMERS; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SWINE; TIME FACTORS; VIREMIA;

CLASSICAL SWINE FEVER VIRUS; SUIDAE;

EID: 67549131964     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.04.029     Document Type: Article

References (29)

1. Baxi M., McRae D., Boxi S., Greiser-Wike I., Vilcek S., Amoako K., and Deregt D. A one-step multiplex real-time RT-PCR for detection and typing of bovine viral diarrhea viruses. Vet. Microbiol. 116 (2006) 37-44
2. Biagetti M., Greiser-Wilke I., and Rutili D. Molecular epidemiology of classical swine fever in Italy. Vet. Microbiol. 83 (2001) 205-215
3. Blacksell S.D., Khounsy S., Boyle D.B., Gleeson L.J., Westbury H.A., and Mackenzie J.S. Genetic typing of classical swine fever viruses from Lao PDR by analysis of the 5′ non-coding region. Virus Genes 31 (2005) 349-355
4. Chao D.Y., Davis B.S., and Chang G.J. Development of multiplex real-time reverse transcriptase PCR assays for detecting eight medically important flaviviruses in mosquitoes. J. Clin. Microbiol. 45 (2007) 584-589
5. Depner K., Hoffmann B., and Beer M. Evaluation of real-time RT-PCR assay for the routine intra vitam diagnosis of classical swine fever. Vet. Microbiol. 121 (2007) 338-343
6. Ferrari M. A tissue culture vaccine with lapinized Chinese (LC) strain of hog cholera virus (HCV). Comp. Immunol. Microbiol. Infect. Dis. 15 (1992) 221-228
7. Greiser-Wilke I., Dreier S., Haas L., and Zimmermann B. Genetic typing of classical swine fever viruses-a review. Dtsch. Tierarztl. Wochenschr. 113 (2006) 134-138
8. Haegeman A., Dewulf J., Vrancken R., Tignon M., Ribbens S., and Koenen F. Characterisation of the discrepancy between PCR and virus isolation in relation to classical swine fever virus detection. J. Virol. Methods 136 (2006) 44-50
9. Hofmann M.A., Brechtbuhl K., and Stauber N. Rapid characterization of new pestivirus strains by direct sequencing of PCR-amplified cDNA from the 5′ noncoding region. Arch. Virol. 139 (1994) 217-229
10. Hoffmann B., Beer M., Schelp C., Schirrmeier H., and Depner K. Validation of a real-time RT-PCR assay for sensitive and specific detection of classical swine fever. J. Virol. Methods 130 (2005) 36-44
11. Jong M.H., Chan I.P., Chi C.W., Huang C.C., Chiou T.F., Lee J.T., and Hung W.K. Immunoprotection induced by tissue culture-adapted LPC strain of hog cholera virus. Exp. Rep. Taiwan Provincial Res. Inst. Animal Heath 25 (1989) 49-58
12. Jong M.H., Huang C.C., Chan I.P., Liu T.H., Chi C.W., Chiou T.F., and Lee J.T. Development of tissue culture hog cholera vaccine. Exp. Rep. Taiwan Provincial Res. Inst. Animal Heath 24 (1988) 33-41
13. Kamolsiriprichaiporn S., Morrissy C.J., and Westbury H.A. A comparison of the pathogenicity of two strains of hog cholera virus. 2. Virological studies. Aust. Vet. J. 69 (1992) 245-248
14. Koenig P., Hoffmann B., Depner K.R., Reimann I., Teifke J.P., and Beer M. Detection of classical swine fever vaccine virus in blood and tissue samples of pigs vaccinated either with a conventional C-strain vaccine or a modified live marker vaccine. Vet. Microbiol. 120 (2007) 343-351
15. Lai Y.L., Chung Y.K., Tan H.C., Yap G., Ooi E.E., and Ng L.C. Cost-effective real-time reverse transcriptase PCR (RT-PCR) to screen for Dengue virus followed by rapid single-tube multiplex RT-PCR for serotyping of the virus. J. Clin. Microbiol. 45 (2007) 935-941
16. Ophuis R.J., Morrissy C.J., and Boyle D.B. Detection and quantitative pathogenesis study of classical swine fever virus using a real time RT-PCR assay. J. Virol. Methods 131 (2006) 78-85
17. Office International des Epizooties. World Organisation for Animal Health. Classical swine fever. Terrestrial Animal Health Code. 16th ed. (2007), Office International des Epizooties, Paris, Fance pp. 252-258 (Chapter 2.6.7)
18. Pan C.H., Jong M.H., Huang T.S., Liu H.F., Lin S.Y., and Lai S.S. Phylogenetic analysis of classical swine fever virus in Taiwan. Arch. Virol. 150 (2005) 1019-1101
19. Pan C.H., Jong M.H., Huang Y.L., Huang T.S., Chao P.H., and Lai S.S. Rapid detection and differentiation of wild-type and three attenuated lapinized vaccine strains of Classical swine fever virus by reverse transcription polymerase chain reaction. J. Vet. Diagn. Invest. 20 (2008) 448-456
20. Paton D.J., McGoldrick A., Greiser-Wilke I., Parchariyanon S., Song J.Y., Liou P.P., Stadejek T., Lowings J.P., Bjorklund H., and Belak S. Genetic typing of classical swine fever virus. Vet. Microbiol. 73 (2000) 137-157
21. Payungpom S., Chutinimitkul S., Chaisingh A., Damrongwantanapokin S., Buranathia C., Amonsin A., Theamboonlers A., and Poovorawan Y. Single step multiplex real-time RT-PCR for H5N1 influenza A virus detection. J. Virol. Methods 131 (2006) 143-147
22. Pereda A.J., Greiser-Wilke I., Schmitt B., Rincon M.A., Mogollon J.D., Sabogal Z.Y., Lora A.M., Sanguinetti H., and Piccone M.E. Phylogenetic analysis of classical swine fever virus (CSFV) field isolates from outbreaks in South and Central America. Virus Res. 110 (2005) 111-118
23. Sabogal Z.Y., Mogollon J.D., Rincon M.A., and Clavijo A. Phylogenetic analysis of recent isolates of classical swine fever virus from Colombia. Virus Res. 115 (2006) 99-103
24. Stegeman A., Elbers A., de Smit H., Moser H., Smak J., and Pluimers F. The 1997-1998 epidemic of classical swine fever in the Netherlands. Vet. Microbiol. 73 (2000) 183-196
25. Suradhat S., Damrongwatanapokin S., and Thanawongnuwech R. Factors critical for successful vaccination against classical swine fever in endemic areas. Vet. Microbiol. 119 (2007) 1-9
26. Thrusfield M. Diagnostic testing. Veterinary Epidemiology. 2nd ed. (1995), Blackwell Science Ltd., Oxford 280-282
27. Uttenthal A., Le Potier M.F., Romero L., De Mia G.M., and Floegel-Niesmann G. Classical swine fever (CSF) marker vaccine. Trial I. Challenge studies in weaner pigs. Vet. Microbiol. 83 (2001) 85-106
28. van Oirschot J.T. Vaccinology of classical swine fever: from lab to field. Vet. Microbiol. 96 (2003) 367-384
29. Vilcek S., and Nettleton P.F. Pestiviruses in wild animals. Vet. Microbiol. 116 (2006) 1-12