Identification of possible source markers in marine dissolved organic matter using ultrahigh resolution mass spectrometry

Geochimica et Cosmochimica Acta

Volumn 73, Issue 15, 2009, Pages 4384-4399

  Kujawinski, Elizabeth B ^a   Longnecker, Krista ^a   Blough, Neil V ^b   Vecchio, Rossana Del ^c   Finlay, Liam ^d   Kitner, Joshua B ^d   Giovannoni, Stephen J ^d  

^a WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

^b Bldg 142   (United States)

^c UNIVERSITY OF MARYLAND   (United States)

^d OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; CHEMICAL COMPOSITION; DISSOLVED ORGANIC MATTER; IDENTIFICATION METHOD; MARINE ENVIRONMENT; MASS SPECTROMETRY; MULTIVARIATE ANALYSIS; PHOTODEGRADATION; SEAWATER;

ATLANTIC OCEAN; ATLANTIC OCEAN (NORTH);

BACTERIA (MICROORGANISMS); CANDIDATUS PELAGIBACTER UBIQUE; PROTEOBACTERIA;

EID: 67449159003     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2009.04.033     Document Type: Article

References (80)

1. Alonso C., and Pernthaler J. Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters. Environ. Microbiol. 8 (2006) 2022-2030
2. Alonso-Saez L., Aristegui J., Pinhassi J., Gomez-Consarnau L., Gonzalez J.M., Vaque D., Agusti S., and Gasol J.M. Bacterial assemblage structure and carbon metabolism along a productivity gradient in the NE Atlantic Ocean. Aquat. Microb. Ecol. 46 (2007) 43-53
3. Aluwihare L.I., Repeta D.J., and Chen R.F. Chemical composition and cycling of dissolved organic matter in the Mid-Atlantic Bight. Deep Sea Res. II 49 (2002) 4421-4437
4. Amon R.M.W., Fitznar H.P., and Benner R. Linkages among the bioreactivity, chemical composition, and diagenetic state of marine dissolved organic matter. Limnol. Oceanogr. 46 (2001) 287-297
5. Azam F., and Cho B.C. Bacterial Utilization of Organic Matter in the Sea, Ecology of Microbial Communities (1987), Cambridge University Press, Cambridge
6. Benner R., and Biddanda B. Photochemical transformations of surface and deep marine dissolved organic matter: effects on bacterial growth. Limnol. Oceanogr. 43 (1998) 1373-1378
7. Blough N.V., and Del Vecchio R. Chromophoric DOM in the coastal environment. In: Hansell D.A., and Carlson C.A. (Eds). Biogeochemistry of Marine Dissolved Organic Matter (2002), Academic Press, San Diego, CA
8. Bushaw K.L., Zepp R.G., Tarr M.A., Schulz-Janders D., Bourbonniere R.A., Hodson R.E., Miller W.L., Bronk D.A., and Moran M.A. Photochemical release of biologically available nitrogen from aquatic dissolved organic matter. Nature 381 (1996) 404-407
9. Cammack W.K.L., Kalff J., Prairie Y.T., and Smith E.M. Fluorescent dissolved organic matter in lakes: relationships with heterotrophic metabolism. Limnol. Oceanogr. 49 (2004) 2034-2045
10. Carlson C.A. Production and removal processes. In: Hansell D.A., and Carlson C.A. (Eds). Biogeochemistry of Marine Dissolved Organic Matter (2002), Elsevier Science, San Diego CA
11. Connon S.A., and Giovannoni S.J. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68 (2002) 3878-3885
12. Del Vecchio R., and Blough N.V. On the origin of the optical properties of humic substances. Environ. Sci. Technol. 38 (2004) 3885-3891
13. Del Vecchio R., and Blough N.V. Spatial and seasonal distribution of chromophoric dissolved organic matter and dissolved organic carbon in the Middle Atlantic Bight. Mar. Chem. 89 (2004) 169-187
14. Dittmar T., and Koch B.P. Thermogenic organic matter dissolved in the Abyssal Ocean. Mar. Chem. 102 (2006) 208-217
15. Dittmar T., Whitehead K., Minor E.C., and Koch B.P. Tracing terrigenous dissolved organic matter and its photochemical decay in the ocean by liquid chromatography/mass spectrometry. Mar. Chem. 107 (2007) 378-387
16. Dittmar T., Koch B., Hertkorn N., and Kattner G. A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater. Limnol. Oceanogr. Methods 6 (2008) 230-235
17. Dufrene M., and Legendre P. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67 (1997) 345-366
18. Giovannoni S.J., Britschgi B.T., Moyer C.L., and Field K.G. Genetic diversity in Sargasso Sea bacterioplankton. Nature 345 (1990) 60-63
19. Giovannoni S.J., Tripp H.J., Givan S., Podar M., Vergin K.L., Baptista D., Bibbs L., Eads J., Richardson T.H., Noordewier M., Rappé M.S., Short J.M., Carrington J.C., and Mathur E.J. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309 (2005) 1242-1245
20. Goni M.A., and Montgomery S. Alkaline CuO oxidation with a microwave digestion system: lignin analyses of geochemical samples. Anal. Chem. 72 (2000) 3116-3121
21. Gonsior, M., Peake, B. M., Cooper, W. T., Podgorski, D., D'Andrilli, J., and Cooper, W. J. (2009) Photochemically induced changes in dissolved organic matter identified by ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry. Environ. Sci. Technol. 43, 698-703.
22. Green S.A., and Blough N.V. Optical-absorption and fluorescence properties of chromophoric dissolved organic-matter in natural-waters. Limnol. Oceanogr. 39 (1994) 1903-1916
23. Hansell D.A., and Carlson C.A. Biogeochemistry of Marine Dissolved Organic Matter (2002), Academic Press, San Diego, CA
24. Hatcher P.G., Rowan R., and Mattingly M.A. 1-H and 13-C NMR of marine humic acids. Org. Geochem. 2 (1980) 77-85
25. Hedges J.I. Compositional indicators of organic acid sources and reactions in natural environments. In: Perdue E.M., and Gjessing E.T. (Eds). Organic Acids in Aquatic Ecosystems (1990), John Wiley & Sons Ltd.
26. Hedges J.I. Why dissolved organics matter. In: Hansell D.A., and Carlson C.A. (Eds). Biogeochemistry of Marine Dissolved Organic Matter (2002), Elsevier Science, San Diego, CA
27. Hedges J.I., and Ertel J.R. Characterization of lignin by gas capillary chromatography of cupric oxide oxidation products. Anal. Chem. 54 (1982) 174-178
28. Hernes P.J., and Benner R. Photochemical and microbial degradation of dissolved lignin phenols: implications for the fate of terrigenous dissolved organic matter in marine environments. J. Geophys. Res. 108 (2003) 3921
29. Hertkorn N., Frommberger M., Witt M., Koch B.P., Schmitt-Kopplin P., and Perdue E.M. Natural organic matter and the event horizon of mass spectrometry. Anal. Chem. 80 (2008) 8908-8919
30. Hughey C.A., Rodgers R.P., Marshall A.G., Walters C.C., Qian K.N., and Mankiewicz P. Acidic and neutral polar NSO compounds in Smackover oils of different thermal maturity revealed by electrospray high field Fourier transform ion cyclotron resonance mass spectrometry. Org. Geochem. 35 (2004) 863-880
31. Kieber D.J. Photochemical production of biological substrates. In: de Mora S.J., Demers S., and Vernet M. (Eds). The effect of UV radiation in the marine environment (2000), Cambridge University Press, Cambridge
32. Kieber D.J., McDaniel J., and Mopper K. Photochemical source of biological substrates in sea water: implications for carbon cycling. Nature 341 (1989) 637-639
33. Kim S., Kramer R.W., and Hatcher P.G. Graphical method for analysis of ultrahigh-resolution broadband mass spectra of natural organic matter, the Van Krevelen diagram. Anal. Chem. 75 (2003) 5336-5344
34. Kim S., Simpson A.J., Kujawinski E.B., Freitas M.A., and Hatcher P.G. Non-invasive advanced spectroscopic methods (electrospray ionization mass spectrometry and 2D solution NMR) for analysis of DOM isolated by C18 solid phase disk extraction. Org. Geochem. 34 (2003) 1325-1335
35. Kim S., Kaplan L.A., and Hatcher P.G. Biodegradable dissolved organic matter in a temperate and a tropical stream determined from ultra-high resolution mass spectrometry. Limnol. Oceanogr. 51 (2006) 1054-1063
36. Kim S., Rodgers R.P., and Marshall A.G. Truly "exact" mass: elemental composition can be determined uniquely from molecular mass measurement at similar to 0.1 mDa accuracy for molecules up to similar to 500 Da. Int. J. Mass Spectrom. 251 (2006) 260-265
37. Koch B.P., Witt M., Engbrodt R., Dittmar T., and Kattner G. Molecular formulae of marine and terrigenous dissolved organic matter detected by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Geochim. Cosmochim. Acta 69 (2005) 3299-3308
38. Koch B.P., Ludwichowski K.U., Kattner G., Dittmar T., and Witt M. Advanced characterization of marine dissolved organic matter by combining reversed-phase liquid chromatography and FT-ICR-MS. Mar. Chem. 111 (2008) 233-241
39. Kruskal J.B. Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29 (1964) 1-27
40. Kujawinski E.B., and Behn M.D. Automated analysis of electrospray ionization Fourier transform ion cyclotron resonance mass spectra of natural organic matter. Anal. Chem. 78 (2006) 4363-4373
41. Kujawinski E.B., Hatcher P.G., and Freitas M.A. High-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) of humic and fulvic acids: improvements and comparisons. Anal. Chem. 74 (2002) 413-419
42. Kujawinski E.B., Del Vecchio R., Blough N.V., Klein G.C., and Marshall A.G. Probing molecular-level transformations of dissolved organic matter: insights from electrospray ionization Fourier-transform ion cyclotron resonance mass spectrometry. Mar. Chem. 92 (2004) 23-37
43. Loh A.N., Bauer J.E., and Druffel E.R.M. Variable ageing and storage of dissolved organic components in the open ocean. Nature 430 (2004) 877-881
44. Louchouarn P., Opsahl S., and Benner R. Isolation and quantification of dissolved lignin from natural waters using solid-phase extraction and GC/MS. Anal. Chem. 72 (2000) 2780-2787
45. Malmstrom R.R., Cottrell M.T., Elifantz H., and Kirchman D.L. Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean. Appl. Environ. Microbiol. 71 (2005) 2979-2986
46. Mannino A., and Harvey H.R. Lipid composition in particulate and dissolved organic matter in the Delaware Estuary: sources and diagenetic patterns. Geochim. Cosmochim. Acta 63 (1999) 2219-2235
47. Maranon E., Cermeno P., Fernandez E., Rodriguez J., and Zabala L. Significance and mechanisms of photosynthetic production of dissolved organic carbon in a coastal eutrophic ecosystem. Limnol. Oceanogr. 49 (2004) 1652-1666
48. Marshall A.G., Hendrickson C.L., and Jackson G.S. Fourier transform ion cyclotron resonance mass spectrometry: a primer. Mass Spectrom. Rev. 17 (1998) 1-35
49. Mather P.M. Computational methods of multivariate analysis in physical geography (1976), J. Wiley & Sons, London
50. McCallister S.L., Bauer J.E., Kelly J., and Ducklow H.W. Effects of sunlight on decomposition of estuarine dissolved organic C, N and P and bacterial metabolism. Aquat. Microb. Ecol. 40 (2005) 25-35
51. McCune B., and Grace J.B. Analysis of Ecological Communities (2002), MjM Software Design, Gleneden Beach, Oregon
52. McIntyre C., and McRae C. Proposed guidelines for sample preparation and ESI-MS analysis of humic substances to avoid self-esterification. Org. Geochem. 36 (2005) 543-553
53. Meyers-Schulte K.J., and Hedges J.I. Molecular evidence of a terrestrial component of organic matter dissolved in ocean water. Nature 321 (1986) 61-63
54. Mopper K., and Kieber D.J. The photochemistry and cycling of carbon, sulfur, nitrogen and phosphorus. In: Hansel D.A., and Carlson C.A. (Eds). Biogeochemistry of Marine Dissolved Organic Matter (2002), Academic Press, San Diego, CA
55. Mopper K., Zhou X., Kieber R.J., Kieber D.J., Sikorski R.J., and Jones R.D. Photochemical degradation of dissolved organic carbon and its impact on the oceanic carbon cycle. Nature 353 (1991) 60-62
56. Moran M.A., and Zepp R.G. Role of photoreactions in the formation of biologically labile compounds from dissolved organic matter. Limnol. Oceanogr. 42 (1997) 1307-1316
57. Moran M.A., Sheldon W.M., and Zepp R.G. Carbon loss and optical property changes during long-term photochemical and biological degradation of estuarine dissolved organic matter. Limnol. Oceanogr. 45 (2000) 1254-1264
58. Morris R.M., Rappé M.S., Connon S.A., Vergin K.L., Siebold W.A., Carlson C.A., and Giovannoni S.J. SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420 (2002) 806-810
59. Mou X.Z., Hodson R.E., and Moran M.A. Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater. Environ. Microbiol. 9 (2007) 2025-2037
60. Muddiman D.C., and Oberg A.L. Statistical evaluation of internal and external mass calibration laws utilized in Fourier transform ion cyclotron resonance mass spectrometry. Anal. Chem. 77 (2005) 2406-2414
61. Nagata T. Production mechanisms of dissolved organic matter. In: Kirchman D.L. (Ed). Microbial Ecology of the Oceans (2000), Wiley-Liss, Inc., NY, New York
62. Nelson N.B., and Siegel D.A. Chromophoric DOM in the open ocean. In: Hansell D.A., and Carlson C.A. (Eds). Biogeochemistry of Marine Dissolved Organic Matter (2002), Academic Press, San Diego, CA
63. Obernosterer I., and Benner R. Competition between biological and photochemical processes in the mineralization of dissolved organic carbon. Limnol. Oceanogr. 49 (2004) 117-124
64. Opsahl S., and Benner R. Distribution and cycling of terrigenous dissolved organic matter in the ocean. Nature 386 (1997) 480-482
65. Pett-Ridge J., and Firestone M.K. Redox fluctuation structures microbial communities in a wet tropical soil. Appl. Environ. Microbiol. 71 (2005) 6998-7007
66. Rappé M.S., Connon S.A., Vergin K.L., and Giovannoni S.J. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418 (2002) 630-633
67. Rossello-Mora R., Lucio M., Pena A., Brito-Echeverria J., Lopez-Lopez A., Valens-Vadell M., Frommberger M., Anton J., and Schmitt-Kopplin P. Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber. Isme J. 2 (2008) 242-253
68. Rostad C.E., and Leenheer J.A. Factors that affect molecular weight distribution of Suwannee river fulvic acid as determined by electrospray ionization mass spectrometry. Anal. Chim. Acta 523 (2004) 269-278
69. Rusch D.B., Halpern A.L., Sutton G., Heidelberg K.B., Williamson S., Yooseph S., Wu D.Y., Eisen J.A., Hoffman J.M., Remington K., Beeson K., Tran B., Smith H., Baden-Tillson H., Stewart C., Thorpe J., Freeman J., Andrews-Pfannkoch C., Venter J.E., Li K., Kravitz S., Heidelberg J.F., Utterback T., Rogers Y.H., Falcon L.I., Souza V., Bonilla-Rosso G., Eguiarte L.E., Karl D.M., Sathyendranath S., Platt T., Bermingham E., Gallardo V., Tamayo-Castillo G., Ferrari M.R., Strausberg R.L., Nealson K., Friedman R., Frazier M., and Venter J.C. The sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol. 5 (2007) 398-431
70. Schmitt-Kopplin P., Hertkorn N., Schulten H.-R., and Kettrup A. Structural changes in a dissolved soil humic acid during photochemical degradation processes under O2 and N2 atmosphere. Environ. Sci. Techcnol. 32 (1998) 2531-2541
71. Seitzinger S.P., Hartnett H., Lauck R., Mazurek M.A., Minegishi T., Spyres G., and Styles R.M. Molecular-level chemical characterization and bioavailability of dissolved organic matter in stream water using electrospray ionization mass spectrometry. Limnol. Oceanogr. 50 (2005) 1-12
72. Senko M.W., Canterbury J.D., Guan S., and Marshall A.G. A high-performance modular data system for FT-ICR mass spectrometry. Rapid Commun. Mass Spectrom. 10 (1996) 1839-1844
73. Senko M.W., Hendrickson C.L., Pasa-Tolic L., Marto J.A., White F.M., Guan S., and Marshall A.G. Electrospray ionization Fourier transform ion cyclotron resonance at 9.4 T. Rapid Commun. Mass Spectrom. 10 (1996) 1824-1828
74. Sleighter R.L., and Hatcher P.G. Molecular characterization of dissolved organic matter (DOM) along a river to ocean transect of the lower Chesapeake Bay by ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Mar. Chem. 110 (2008) 140-152
75. Sleighter, R. L., McKee, G. A. and Hatcher, P. G. (2009) Direct Fourier transform mass spectral analysis of natural waters with low dissolved organic matter. Org. Geochem. 40, 119-125.
76. Stenson A.C., Marshall A.G., and Cooper W.T. Exact masses and chemical formulas of individual Suwannee River fulvic acids from ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectra. Anal. Chem. 75 (2003) 1275-1284
77. Tranvik L., and Kokalj S. Decreased biodegradability of algal DOC due to interactive effects of UV radiation and humic matter. Aquat. Microb. Ecol. 14 (1998) 301-307
78. Tremblay L.B., Dittmar T., Marshall A.G., Cooper W.J., and Cooper W.T. Molecular characterization of dissolved organic matter in a North Brazilian mangrove porewater and mangrove-fringed estuaries by ultrahigh resolution Fourier transform-ion cyclotron resonance mass spectrometry and excitation/emission spectroscopy. Mar. Chem. 105 (2007) 15-29
79. Vaillancourt, R. D., Marra, J., Prieto, L., Houghton, R. W., Hales, B. and Hebert, D. (2005) Light absorption and scattering by particles and CDOM at the New England shelfbreak front. Geochem. Geophys. Geosystems 6, Article No. Q11003.
80. Vodacek A., Blough N.V., DeGrandpre M.D., Peltzer E.T., and Nelson R.K. Seasonal variation of CDOM and DOC in the Middle Atlantic Bight: terrestrial inputs and photooxidation. Limnol. Oceanogr. 42 (1997) 674-686