The genetics of amphibian declines: Population substructure and molecular differentiation in the Yosemite Toad, Bufo canorus (Anura, Bufonidae) based on single-strand conformation polymorphism analysis (SSCP) and mitochondrial DNA sequence data

Molecular Ecology

Volumn 9, Issue 3, 2000, Pages 245-257

  Bradley Shaffer, H ^a   Fellers, Gary M ^b   Magee, Allison ^a   Randal Voss, S ^a,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b U S GEOLOGICAL SURVEY   (United States)

^c Immunology and Pathology   (United States)

Author keywords

Bufo canorus; Bufonidae; Conservation genetics; Declining amphibian; DNA; Mitochondrial; SSCP

Indexed keywords

BUFO; ENVIRONMENTAL MANAGEMENT; GENETIC VARIANCE; HAPLOTYPE; MITOCHONDRIAL DNA; MONOPHYLY; MOVEMENT PATTERN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION STRUCTURE; SINGLE STRAND CONFORMATION POLYMORPHISM; UNITED STATES;

ANIMALS; BASE SEQUENCE; BUFONIDAE; CALIFORNIA; DNA PRIMERS; DNA, MITOCHONDRIAL; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETICS, POPULATION; HAPLOTYPES; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL;

AMPHIBIA; ANURA; BOREAS; BUFO BOREAS; BUFO CANORUS; BUFO EXSUL; BUFONIDAE;

EID: 6744248897     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2000.00835.x     Document Type: Article

References (38)

1. Baum DA (1992) Phylogenetic species concepts. Trends in Ecology and Evolution, 7, 1-2.
2. Baum DA, Shaw KL (1995) Genealogical perspectives on the species problem. Monographs in Systematic Botany, 53, 289-303.
3. Berger L, Speare R, Daszak P et al. (1998) Chydridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America. Proceedings of the National Academy of Sciences of the USA, 95, 9031-9036.
4. Blaustein AR, Wake DB (1990) Declining amphibian populations: a global phenomenon? Trends in Ecology and Evolution, 5, 203-204.
5. Bradford DF, Graber DM, Johnson RD, Andrews RD, Jennings WB (1994) Population declines of the native frog, Rana muscosa, in Sequoia and Kings Canyon National Parks, California. Southwestern Naturalist, 39, 323-327.
6. Chakravarty G, Redkar A, Mittra I (1996) A comparative study of detection of p53 mutations in human breast cancer by flow cytometry, single-strand conformation polymorphism and genomic sequencing. British Journal of Cancer, 74, 1181-1187.
7. Chenoweth SF, Hughes JM, Keenan CP, Shane L (1998) Concordance between dispersal and mitochondrial gene flow: isolation by distance in a tropical teleost, Lats calcarifer (Australian barramundi). Heredity, 80, 187-197.
8. Dodd CK, Seigel RA (1991) Relocation, repatriation, and translocation of amphibians and reptiles: are they conservation strategies that work? Herpetologica, 47, 336-250.
9. Driscoll DA (1998) Genetic structure, metapopulation processes and evolution influence the conservation strategies for two endangered frog species. Biological Conservation, 83, 43-54.
10. Drost CA, Fellers GM (1996) Collapse of a regional frog fauna in the Yosemite area of the California Sierra Nevada, USA. Conservation Biology, 10, 414-425.
11. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
12. Fellers GM, Drost CA (1993) Disappearance of the Cascades Frog, Rana cascade, at the southern end of its range. Biological Conservation, 65, 177-181.
13. Fisher RN, Shaffer HB (1996) The decline of amphibians in California's Great Central Valley. Conservation Biology, 10, 1387-1397.
14. Gascon C, Lougheed SC, Bogart JP (1996) Genetic and morphological variation in Vanzolinius discodactylus: a test of the river hypothesis of speciation. Biotropica, 28, 376-387.
15. Gascon C, Lougheed SC, Bogart JP (1998) Patterns of genetic population differentiation in four species of Amazonian frogs: a test of the riverine barrier hypothesis. Biotropica, 30, 104-119.
16. Graybeal A (1993) The phylogenetic utility of cytochrome b: lessons from bufonid frogs. Molecular Phylogenetics and Evolution, 2, 256-269.
17. Hillis DM, Mable BK, Larson A, Davis SK, Zimmer EA (1996) Nucleic Acids IV: sequencing and cloning. In: Molecular Systematics (2nd edn), (eds Hillis DM, Moritz C, Mable BK) pp. 321-381. Sinauer Associates, Inc. Sunderland, MA.
18. Hiss RH, Norris DE, Dietrich CH, Whitcombe RF, West DF, Bosio CF, Kambhampati S, Piesman J, Antolin MF, Black WCIV (1994) Molecular taxonomy using single-strand conformation polymorphism (SSCP) analysis of mitochondrial ribosomal DNA genes. Insect Molecular Biology, 3, 171-182.
19. Hitchings SP, Beebee TJC (1997) Genetic substructuring as a result of barriers to gene flow in urban Rana temporaria (common frog) populations: implications for biodiversity conservation. Heredity, 79, 117-127.
20. Jennings MR, Hayes MP (1994) Amphibian and reptile species of special concern in California. California Department of Fish and Game, Final Report.
21. Kagarise Sherman C, Morton ML (1993) Population declines of Yosemite toads in the eastern Sierra Nevada of California. Journal of Herpetology, 27, 186-198.
22. Karlstrom EL (1973) Bufo canorus. Catalogue of American Amphibians and Reptiles. 132.1-132.2.
23. Kimberling DN, Ferreira AR, Shuster SM, Keim P (1996) RAPD marker estimation of genetic structure among isolated northern leopard frog populations in the south-western USA. Molecular Ecology, 5, 521-529.
24. Lande R (1988) Genetics and demography in biological conservation. Science, 241, 1455-1460.
25. Lips KR (1998) Decline of a tropical montane amphibian fauna. Conservation Biology, 12, 106-117.
26. Martin DL (1991) Population census of a species of special concern: The Yosemite toad (Bufo canorus). Fourth Biennial Conference of Research in California's National Parks. University of California, Davis, CA (Abstract).
27. Moritz C (1994) Applications of mitochondrial DNA analysis in conservation: a critical review. Molecular Ecology, 3, 401-411.
28. Moritz C, Faith DP (1998) Comparative phylogeography and the identification of genetically divergent areas for conservation. Molecular Ecology, 7, 419-429.
29. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proceedings of the National Academy of Sciences of the USA, 86, 2766-2770.
30. Pechmann JHK, Wilbur HM (1994) Putting declining amphibian populations in perspective: Natural fluctuations and human impacts. Herpetologica, 50, 65-84.
31. Rowe G, Beebee TJC, Burke T (1998) Phylogeography of the natterjack toad Bufo calamita in Britain: genetic differentiation of native and translocated populations. Molecular Ecology, 7, 751-760.
32. Shaffer HB, Breden F (1989) The relationship between allozyme variation and life history: Non-transforming salamanders are less variable. Copeia, 1989 (4), 1016-1023.
33. Slatkin M (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
34. Slatkin M, Maddison WP (1990) Detecting isolation by distance using phylogenies of genes. Genetics, 126, 249-260.
35. Stebbins RC (1951) Amphibians of Western North America. University of California Press, Berkeley, CA.
36. Stebbins RC, Cohen NW (1995) A Natural History of Amphibians. Princeton University Press. Princeton, NJ.
37. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
38. Wake DB (1998) Action on amphibians. Trends in Ecology and Evolution, 13, 379-380.