Microarray profiling of microRNAs expressed in testis tissues of developing primates

Journal of Assisted Reproduction and Genetics

Volumn 26, Issue 4, 2009, Pages 179-186

  Yan, Naihong ^a   Lu, Yilu ^a   Sun, Huaqin ^a   Qiu, Weimin ^a   Tao, Dachang ^a   Liu, Yunqiang ^a   Chen, Huijiao ^a   Yang, Yuan ^a   Zhang, Sizhong ^a   Li, Xiang ^a   Ma, Yongxin ^a  

^a SICHUAN UNIVERSITY   (China)

Author keywords

Gene expression; PicTar and TargetScan; QRT PCR; Spermatogenesis

Indexed keywords

MICRORNA;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; GENE; HUMAN; HUMAN TISSUE; INFORMATION; MALE; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PRIMATE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHESUS MONKEY; SAMPLE; SPERMATOGENESIS; TESTIS;

ADULT; ANIMALS; HUMANS; MACACA MULATTA; MALE; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SPERMATOGENESIS; TESTIS;

MACACA MULATTA; MAMMALIA; PRIMATES;

EID: 67349271071     PISSN: 10580468     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10815-009-9305-y     Document Type: Article

References (34)

1. HL Feng 2003 Molecular biology of male infertility Arch Androl 49 19 27 10.1080/01485010290031556 (Pubitemid 36061299)
2. NB Hecht 1998 Molecular mechanisms of male germ cell differentiation Bioessays. 20 555 61 10.1002/(SICI) 1521-1878(199807) 20:7<555::AID- BIES6>3.0.CO;2-J (Pubitemid 28362301)
3. KC Kleene 1996 Patterns of translational regulation in the mammalian testis Mol Reprod Dev 43 268 81 10.1002/(SICI) 1098-2795(199602) 43:2<268::AID-MRD17>3.0.CO;2-# (Pubitemid 26049804)
4. V Ambros 2004 The functions of animal microRNAs Nature 31 350 5 10.1038/nature02871 (Pubitemid 39265675)
5. RI Gregory KP Yan G Amuthan T Chendrimada B Doratotaj N Cooch R Shiekhattar 2004 The Microprocessor complex mediates the genesis of microRNAs Nature 432 235 40 10.1038/nature03120 (Pubitemid 39545855)
6. Z Yu T Raabe NB Hecht 2005 MicroRNA Mirn122a reduces expression of the posttranscriptionally regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by mRNA cleavage Biol Reprod 73 427 33 10.1095/biolreprod.105.040998 (Pubitemid 41170197)
7. M Lagos-Quintana R Rauhut A Yalcin J Meyer W Lendeckel T Tuschl 2002 Identification of tissue-specific microRNA from mouse Curr Biol 12 735 9 10.1016/S0960-9822(02) 00809-6
8. T Watanabe A Takeda T Tsukiyama K Mise T Okuno H Sasaki N Minami H Imai 2006 Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes Genes Dev 20 1732 43 10.1101/gad.1425706 (Pubitemid 43992882)
9. S Ro C Park KM Sanders JR [tmp] McCarrey W Yan 2007 Cloning and expression profiling of testis-expressed microRNAs Dev Biol 311 592 602 10.1016/j.ydbio.2007.09.009 (Pubitemid 350064371)
10. RE Braun 1998 Post-transcriptional control of gene expression during spermatogenesis Semin Cell Dev Biol. 9 483 9 10.1006/scdb.1998.0226 (Pubitemid 128350676)
11. KJ Livak TD Schmittgen 2001 Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method Methods 25 402 8 10.1006/meth.2001.1262 (Pubitemid 34164012)
12. SN Peirson JN Butler RG Foster 2003 Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis Nucleic Acids Res 31 e73 10.1093/nar/gng073
13. S Lall D Grün A Krek K Chen YL Wang CN Dewey P Sood T Colombo N Bray P Macmenamin HL Kao KC Gunsalus L Pachter F Piano N Rajewsky 2006 A genome-wide map of conserved microRNA targets in C. elegans Curr Biol 16 460 71 10.1016/j.cub.2006.01.050 (Pubitemid 43343706)
14. BP Lewis IH Shih MW Jones-Rhoades DP Bartel CB Burge 2003 Prediction of mammalian microRNA targets Cell 115 787 98 10.1016/S0092-8674(03) 01018-3 (Pubitemid 38058492)
15. C Chen DA Ridzon AJ Broomer Z Zhou DH Lee JT Nguyen M Barbisin NL Xu VR Mahuvakar MR Andersen KQ Lao KJ Livak KJ Guegler 2005 Real-time quantification of microRNAs stem-loop RT-PCR Nucleic Acids Res 33 e179 10.1093/nar/gni178 (Pubitemid 41806407)
16. RA Gibbs J Rogers MG Katze R Bumgarner GM Weinstock ER Mardis KA Remington RL Strausberg JC Venter RK Wilson MA Batzer CD Bustamante 2007 Evolutionary and biomedical insights from the rhesus macaque genome Science 16 222 34 (Pubitemid 46633091)
17. M Selbach B Schwanhäusser N Thierfelder Z Fang R Khanin N Rajewsky 2008 Widespread changes in protein synthesis induced by microRNAs Nature 7209 58 63 10.1038/nature07228
18. D Baek J Villén C Shin FD Camargo SP Gygi DP Bartel 2008 The impact of microRNAs on protein output Nature 7209 64 71 10.1038/nature07242
19. M Scobey S Bertera J Somers S Watkins A Zeleznik W Walker 2001 Delivery of a cyclic adenosine 3', 5'-monophosphate response element-binding protein (CREB) mutant to seminiferous tubules results in impaired spermatogenesis Endocrinology. 142 948 54 10.1210/en.142.2.948 (Pubitemid 32222445)
20. B Granadino C Arias-de-la-Fuente C Pérez-Sánchez M Párraga LA López-Fernández J del Mazo J Rey-Campos 2000 Fhx (Foxj2) expression is activated during spermatogenesis and very early in embryonic development Mech Dev 97 157 60 10.1016/S0925-4773(00) 00410-X
21. P Chieffi S Battista M Barchi S Di Agostino GM Pierantoni M Fedele L Chiariotti D Tramontano A Fusco 2002 HMGA1 and HMGA2 protein expression in mouse spermatogenesis Oncogene. 21 3644 50 10.1038/sj.onc.1205501 (Pubitemid 34587696)
22. M Godmann I Kromberg J Mayer R Behr 2005 The mouse Krüppel-like Factor 4 (Klf4) gene: four functional polyadenylation sites which are used in a cell-specific manner as revealed by testicular transcript analysis and multiple processed pseudogenes Gene. 361 149 56 10.1016/j.gene.2005.07.025 (Pubitemid 41506943)
23. H Saito K Takeda K Yasumoto H Ohtani K Watanabe K Takahashi A Fukuzaki Y Arai H Yamamoto S Shibahara 2003 Germ cell-specific expression of microphthalmia-associated transcription factor mRNA in mouse testis J Biochem. 134 143 50 10.1093/jb/mvg122 (Pubitemid 37071190)
24. T Hayashi Y Kageyama K Ishizaka G Xia K Kihara H Oshima 2001 Requirement of Notch 1 and its ligand jagged 2 expressions for spermatogenesis in rat and human testes J Androl. 22 999 1011 (Pubitemid 33020322)
25. F Connor E Wright P Denny P Koopman A Ashworth 1995 The Sry-related HMG box-containing gene Sox6 is expressed in the adult testis and developing nervous system of the mouse Nucleic Acids Res 23 3365 72 10.1093/nar/23.17.3365
26. DC Wilkerson SA Wolfe SR Grimes 2002 Sp1 and Sp3 activate the testis specific histone H1t promoter through the H1t/GC-box J Cell Biochem. 86 716 25 10.1002/jcb.10265
27. Q Cui Z Yu EO Purisima E Wang 2006 Principles of microRNA regulation of a human cellular signaling network Mol Syst Biol. 2 46 52 10.1038/msb4100089 (Pubitemid 46061065)
28. Y Zhou J Ferguson JT Chang Y Kluger 2007 Inter- and intra-combinatorial regulation by transcription factors and microRNAs BMC Genomics. 8 396 405 10.1186/1471-2164-8-396
29. CM Yamamoto AP Hikim Y Lue AM Portugal TB Guo SY Hsu WA Salameh C Wang AJ Hsueh RS Swerdloff 2001 Impairment of spermatogenesis in transgenic mice with selective overexpression of Bcl-2 in the somatic cells of the testis J Androl. 22 981 91 (Pubitemid 33020320)
30. S Zheng TT Turner JJ Lysiak 2006 Caspase 2 activity contributes to the initial wave of germ cell apoptosis during the first round of spermatogenesis Biol Reprod 74 1026 33 10.1095/biolreprod.105.044610 (Pubitemid 47394290)
31. S Vasudevan Y Tong JA Steitz 2007 Switching from repression to activation: microRNAs can up-regulate translation Science 318 1931 4 10.1126/science.1149460
32. GP Nicchia A Frigeri B Nico D Ribatti M Svelto 2001 Tissue distribution and membrane localization of aquaporin-9 water channel: evidence for sex-linked differences in liver J Histochem Cytochem. 49 1547 56 (Pubitemid 34093109)
33. RF Domeniconi AM Orsi LA Justulin Jr CC Beu SL Felisbino 2007 Aquaporin 9 (AQP9) Localization in the Adult Dog Testis Excurrent Ducts by Immunohistochemistry Anat Rec 290 1519 25 10.1002/ar.20611 (Pubitemid 350247096)
34. P Lopez F Vidal L Martin LA Lopez-Fernandez JF Rual BS Rosen F Cuzin M Rassoulzadegan 2002 Gene control in germinal differentiation: Rnf6, a transcription regulatory protein in the mouse sertoli cell Mol Cell Biol 22 3488 96 10.1128/MCB.22.10.3488-3496.2002 (Pubitemid 34453987)