Characterization of a cryptic plasmid pSFKW33 from Shewanella sp. 33B

Plasmid

Volumn 62, Issue 1, 2009, Pages 44-49

  Werbowy, Katarzyna ^a   Cieśliński, Hubert ^a   Kur, Józef ^a  

^a GDANSK UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

Cryptic plasmid; Plasmid copy number; Psychrotrophic bacterium; Real time PCR; Shewanella spp.

Indexed keywords

INTEGRASE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM ISOLATE; BINDING SITE; CHROMOSOME; ENTEROPATHOGENIC ESCHERICHIA COLI; ESCHERICHIA COLI; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; PROMOTER REGION; PSEUDOMONAS PUTIDA; REAL TIME POLYMERASE CHAIN REACTION; RIBOSOME; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SHEWANELLA; SHEWANELLA BENTHICA; TRANSCRIPTION REGULATION;

BASE SEQUENCE; GENE DOSAGE; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLASMIDS; REFERENCE STANDARDS; SHEWANELLA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PSEUDOMONAS PUTIDA GB-1; SHEWANELLA; SHEWANELLA BENTHICA; SHEWANELLA HALIFAXENSIS; SHEWANELLA SP.;

EID: 67349269202     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2009.03.003     Document Type: Article

References (21)

1. Abeles A.L., Reaves L.D., and Austin S.J. A single DnaA box is sufficient for initiation from the P1 plasmid origin. J. Bacteriol. 172 (1990) 4386-4391
2. Ashiuchi M., Zakaria M.M., Sakaguchi Y., and Yagi T. Sequence analysis of a cryptic plasmid from Flavobacterium sp. KP1, a psychrophilic bacterium. FEMS Microbiol. Lett. 170 (1999) 243-249
3. Barragán M.J., Blázquez B., Zamarro M.T., Mancheño J.M., García J.L., Díaz E., and Carmona M. BzdR, a repressor that controls the anaerobic catabolism of benzoate in Azoarcus sp. CIB, is the first member of a new subfamily of transcriptional regulators. J. Biol. Chem. 18 (2005) 10683-10694
4. Cook M.A., Osborn A.M., Bettandorff J., and Sobecky P.A. Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology 8 (2001) 2089-2101
5. Couturier M., Bex F., Bergquist P.L., and Maas W.K. Identification and classification of bacterial plasmids. Microbiol. Rev. 52 (1988) 375-395
6. Galli D.M., and Chen J. Entry exclusion activity on conjugative plasmid pVT745. Plasmid 55 (2006) 158-163
7. Korenevsky A.A., Vinogradov E., Gorby Y., and Beveridge T.J. Characterization of the lipopolysaccharides and capsules of Shewanella spp. App. Environ. Microbiol. 68 (2002) 4653-4657
8. Lee Ch.L., Ow D.S., and Oh S.K. Quantitative real-time polymerase chain reaction for determination of plasmid copy number in bacteria. J. Microbiol. Met. 65 (2006) 258-267
9. Lee Ch., Kim J., Shin S.G., and Hwang S. Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli. J. Biotechnol. 123 (2006) 273-280
10. Miyake R., Kawamoto J., Wei Y.L., Kitagawa M., Kato I., Kurihara T., and Esaki N. Construction of a low-temperature protein expression system using a cold-adapted bacterium, Shewanella sp. strain Ac10, as the host. Appl. Environ. Microbiol. 73 (2007) 4849-4856
11. Ozawa K., Tsapin A.I., Nealson K.H., Cusanovich M.A., and Akutsu H. Expression of a tetraheme protein, Desulfovibrio vulgaris cytochrome c(3), in Shewanella oneidensis MR-1. Appl. Environ. Microbiol. 66 (2000) 4168-4171
12. Ozawa K., Yasukawa F., Fujiwara Y., and Akutsu H. A simple, rapid, and highly efficient gene expression system for multiheme cytochromes c. Biosci. Biotechnol. Biochem. 65 (2001) 185-189
13. Reyes-Ramirez F., Dobbin P., Sawers G., and Richardson D.J. Characterization of transcriptional regulation of Shewanella frigidimarina Fe(III)-induced flavocytochrome c reveals a novel iron-responsive gene regulation system. J. Bacteriol. 185 (2003) 4564-4571
14. Roh Y., Gao H., Vali H., Kennedy D.W., Yang Z.K., Gao W., Dohnalkova A.C., Stapleton R.D., Moon J.-W., Phelps T.J., Fredrickson J.K., and Zhou J. Metal reduction and iron biomineralization by a psychrotolerant Fe(III)-reducing bacterium, Shewanella sp. strain PV-4. App. Environ. Microbiol. 72 (2006) 3236-3244
15. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
16. Schaper S., and Messer W. Interactions of the initiator protein DnaA of Escherichia coli with its DNA target. J. Biol. Chem. 270 (1995) 17622-17626
17. Sybirna K., Antoine T., Lindberg P., Fourmond V., Rousset M., Méjean V., and Bottin H. Shewanella oneidensis: a new and efficient system for expression and maturation of heterologous [Fe-Fe] hydrogenase from Chlamydomonas reinhardtii. BMC Biotechnol. 8 (2008) 73
18. Takayama Y., and Akutsu H. Expression in periplasmic space of Shewanella oneidensis. Protein Expr. Purif. 56 (2007) 80-84
19. Weisburg W.G., Barns S.M., Pelletier D.A., and Lane D.J. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173 (1991) 697-703
20. Wolinowska R., Masny A., and Płucienniczak A. Integrons. Kosmos 51 (2002) 353-364
21. Zhang, R., Gu, J.D., 2008. Complete sequence of plasmid pMP1 from the marine environmental Vibrio vulnificus and location of its replication origin. Mar. Biotechnol. (NY). [Epub ahead of print].