Expressed sequence tags from the zhikong scallop (Chlamys farreri): Discovery and annotation of host-defense genes

Fish and Shellfish Immunology

Volumn 26, Issue 5, 2009, Pages 744-750

  Wang, Lingling ^a   Song, Linsheng ^a   Zhao, Jianmin ^a   Qiu, Limei ^a   Zhang, Huan ^a   Xu, Wei ^a   Li, Honglei ^a   Li, Chenhua ^a   Wu, Longtao ^a   Guo, Ximing ^b  

^a INSTITUTE OF OCEANOLOGY   (China)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

Bacteria challenge; cDNA library; Chlamys farreri; Expressed sequence tags; Functional annotation; Host defense genes

Indexed keywords

BACTERIA (MICROORGANISMS); CHLAMYS FARRERI; LISTONELLA ANGUILLARUM; MOLLUSCA; PECTINIDAE;

EID: 67349265232     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2009.03.002     Document Type: Article

References (86)

1. Tanguy A., Bierne N., Saavedra C., Pina B., Bachère E., Kube M., et al. Increasing genomic information in bivalves through new EST collections in four species: development of new genetic markers for environmental studies and genome evolution. Gene 408 (2008 Jan 31) 27-36
2. Novoa B., Balseiro P., and Figueras A. Molecular detection of a haplosporidian parasite in carpet shell clam Ruditapes decussatus from Spain. Dis Aquat Organ 61 (2004) 89-93
3. Fu C., Song W., and Li Y. Monoclonal antibodies developed for detection of an epizootic virus associated with mass mortalities of cultured scallop Chlamys farreri. Dis Aquat Organ 65 (2005 Jun 14) 17-22
4. Garnier M., Labreuche Y., Garcia C., Robert M., and Nicolas J.L. Evidence for the involvement of pathogenic bacteria in summer mortalities of the Pacific oyster Crassostrea gigas. Microb Ecol 53 (Feb 2007) 187-196
5. Garnier M., Labreuche Y., and Nicolas J.L. Molecular and phenotypic characterization of Vibrio aestuarianus subsp. francensis subsp. nov., a pathogen of the oyster Crassostrea gigas. Syst Appl Microbiol 31 (2008) 358-365
6. Tanguy A., Guo X., and Ford S.E. Discovery of genes expressed in response to Perkinsus marinus challenge in eastern (Crassostrea virginica) and Pacific (C. gigas) oysters. Gene 338 (2004) 121-131
7. Gueguen Y., Cadoret J.P., Flament D., Barreau-Roumiguiere C., Girardot A.L., Garnier J., et al. Immune gene discovery by expressed sequence tags generated from hemocytes of the bacteria-challenged oyster, Crassostrea gigas. Gene 303 (2003) 139-145
8. Kang Y.S., Kim Y.M., Park K.I., Kim Cho S., Choi K.S., and Cho M. Analysis of EST and lectin expressions in hemocytes of Manila clams (Ruditapes philippinarum) (Bivalvia: Mollusca) infected with Perkinsus olseni. Dev Comp Immunol 30 (2006) 1119-1131
9. Venier P., De Pittà C., Pallavicini A., Marsano F., Varotto L., Romualdi C., et al. Development of mussel mRNA profiling: can gene expression trends reveal coastal water pollution?. Mutat Res 602 (2006 Dec 1) 121-134
10. Medzhitov R., and Janeway Jr. C.A. Decoding the patterns of self and nonself by the innate immune system. Science 296 (2002) 298-300
11. Loker E.S., Adema C.M., Zhang S.M., and Kepler T.B. Invertebrate immune systems-not homogeneous, not simple, not well understood. Immunol Rev 198 (2004) 10-24
12. Kocabas A.M., Li P., Cao D., Karsi A., He C., Patterson A., et al. Expression profile of the channel catfish spleen: analysis of genes involved in immune functions. Mar Biotechnol 4 (2002) 526-536
13. Tsoi S.C.M., Ewart K.V., Penny S., Melville K., Liebscher R.S., Brown L.L., et al. Identification of immunerelevant genes from Atlantic salmon using suppression subtractive hybridization. Mar Biotechnol 6 (2004) 199-214
14. Douglas S.E., Knickle L.C., Kimball J., and Reith M.E. Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species. BMC Genomics 8 (2007) 144
15. Supungul P., Klinbunga S., Pichyangkura R., Jitrapakdee S., Hirono I., Aoki T., et al. Identification of immune-related genes in hemocytes of black tiger shrimp (Penaeus monodon). Mar Biotechnol 4 (2002) 487-494
16. Song L., Xu W., Li C., Wu L., Xiang J., and Guo X. Development of expressed sequence tags from the Bay Scallop, Argopecten irradians irradians. Mar Biotechnol 8 (2006) 161-169
17. Jenny M.J., Ringwood A.H., Lacy E.R., Lewitus A.J., Kempton J.W., Gross P.S., et al. Potential indicators of stress response identified by expressed sequence tag analysis of hemocytes and embryos from the American oyster, Crassostrea virginica. Mar Biotechnol 4 (2002) 81-93
18. Peatman E.J., Wei X., Feng J., Liu L., Kucuktas H., Li P., et al. Development of expressed sequence tags from eastern oyster (Crassostrea virginica): lessons learned from previous efforts. Mar Biotechnol 6 (2004) S491-S496
19. Tanguy A., Bierne N., Saavedra C., Pina B., Bachère E., Kube M., et al. Increasing genomic information in bivalves through new EST collections in four species: development of new genetic markers for environmental studies and genome evolution. Gene 408 (2008) 27-36
20. Guo X., Ford S.E., and Zhang F. Molluscan aquaculture in China. J Shellfish Res 18 (1999) 19-31
21. Zhang Y., Zhang X., Scheuring C.F., Zhang H., Huan P., Li F., et al. Construction and characterization of two bacterial artificial chromosome libraries of zhikong scallop, Chlamys farreri Jones et Preston, and identification of BAC clones containing the genes involved in its innate immune system. Mar Biotechnol 10 (2008) 358-365
22. Zhang L., Bao Z., Cheng J., Li H., Huang X., Wang S., et al. Fosmid library construction and initial analysis of end sequences in zhikong scallop (Chlamys farreri). Mar Biotechnol 9 (2008) 606-612
23. Boutet I., Moraga D., Marinovic L., Obreque J., and Chavez-Crooker P. Characterization of reproduction-specific genes in a marine bivalve mollusc: influence of maturation stage and sex on mRNA expression. Gene 407 (2008 Jan 15) 130-138
24. Roberts S.B., and Goetz F.W. Expressed sequence tag analysis of genes expressed in the bay scallop, Argopecten irradians. Biol Bull 205 (2003) 227-228
25. Matsubara K. Okubo KcDNA analyses in the human genome project. Gene 135 (1993) 265-274
26. Chini V., Rimoldi S., Terova G., Saroglia M., Rossi F., Bernardini G., et al. EST-based identification of genes expressed in the liver of adult seabass (Dicentrarchus labrax, L.). Gene 376 (2006) 102-106
27. Beata S., Rebecca F., Edwin C., and Pang K. Construction of a cDNA library of Lathyrus sativus inoculated with Mycosphaerella pinodes and the expression of potential defence-related expressed sequence tags (ESTs). Physiol Mol Plant Pathol 66 (2005) 55-67
28. Quilang J., Wang S., Li P., Abernathy J., Peatman E., Wang Y., et al. Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers. BMC Genomics 8 (2007) 157
29. Beutler B. Innate immunity: an overview. Mol Immunol 40 (2004) 845-859
30. Janeway Jr. C.A., and Medzhitov R. Innate immune recognition. Annu Rev Immunol 20 (2002) 197-216
31. Christophides G.K., Zdobnov E., Barillas-Mury C., Birney E., Blandin S., Blass C., et al. Immunity-related genes and gene families in Anopheles gambiae. Science 298 (2002) 159-165
32. Bilej M., De Baetselier P., Van Dijck E., Stijlemans B., Colige A., and Beschin A. Distinct carbohydrate recognition domains of an invertebrate defense molecule recognize Gram-negative and Gram-positive bacteria. J Biol Chem 276 (2001) 45840-45847
33. Roux M.M., Pain A., Klimpel K.R., and Dhar A.K. The lipopolysaccharide and h-1,3-glucan binding protein gene is upregulated in white spot virus-infected shrimp (Penaeus stylirostris). J Virol 76 (2002) 7140-7149
34. Su J., Song L., Xu W., Wu L., Li H., and Xiang J. cDNA cloning and mRNA expression of the lipopolysaccharide- and beta-1,3-glucan-binding protein gene from scallop Chlamys farreri. Aquaculture 239 (2004) 69-80
35. Lee S.Y., Wang R., and Söderhäll K. A lipopolysaccharide- and beta -1,3-glucan-binding protein from hemocytes of the freshwater crayfish Pacifastacus leniusculus purification, characterization, and cDNA cloning. J Biol Chem 275 (2000) 1337-1343
36. Vasta G.R., Ahmed H., and Odom E.W. Structural and functional diversity of lectin repertoires in invertebrates, protochordates and ectothermic vertebrates. Curr Opin Struct Biol 14 (2004) 617-630
37. Zelensky A.N., and Gready J.E. The C-type lectin-like domain superfamily. FEBS J 272 (2005) 6179-6217
38. Tunkijjanukij S., and Olafsen J.A. Sialic acid-binding lectin with antibacterial activity from the horse mussel: further characterization and immunolocalization. Dev Comp Immunol 22 (1998) 139-150
39. Wang H., Song L., Li C., Zhao J., Zhang H., Ni D., et al. Cloning and characterization of a novel C-type lectin from zhikong scallop Chlamys farreri. Mol Immunol 44 (2007) 722-731
40. Zheng P., Wang H., Zhao J., Song L., Qiu L., Dong C., et al. A lectin (CfLec-2) aggregating Staphylococcus haemolyticus from scallop Chlamys farreri. Fish Shellfish Immunol 24 (2008) 286-293
41. Akira S., Takeda K., and Kaisho T. Toll-like receptors: critical proteins linking innate and acquired immunity. Nat Immunol 2 (2001) 675-680
42. Goldstein D.R. Toll-like receptors and other links between innate and acquired alloimmunity. Curr Opin Immunol 16 (2004) 538-544
43. Qiu L., Song L., Xu W., Ni D., and Yu Y. Molecular cloning and expression of a Toll receptor gene homologue from zhikong Scallop, Chlamys farreri. Fish Shellfish Immunol 22 (2007) 451-466
44. Lemaitre B., Nicolas E., Michaut L., Reichhart J.M., and Hoffmann J.A. The dorsoventral regulatory gene cassette spatzle/Toll/cactus controls the potent antifungal response in Drosophila adults. Cell 86 (1996) 973-983
45. Goodson M.S., Kojadinovic M., Troll J.V., Scheetz T.E., Casavant T.L., Soares M.B., et al. Identifying components of the NF-kappaB pathway in the beneficial Euprymna scolopes-Vibrio fischeri light organ symbiosis. Appl Environ Microbiol 71 (2005) 6934-6946
46. Qiu L., Song L., Yu Y., Xu W., Ni D., and Zhang Q. Identification and characterization of a myeloid differentiation factor 88 (MyD88) cDNA from zhikong scallop Chlamys farreri. Fish Shellfish Immunol 23 (2007) 614-623
47. Qiu L., Song L., Yu Y., Zhao J., Wang L., and Zhang Q. Identification and expression of TRAF6 (TNF receptor-associated factor 6) gene in zhikong Scallop Chlamys farreri. Fish Shellfish Immunol 26 (2009) 359-369
48. Yu Y., Qiu L., Song L., Zhao J., Ni D., Zhang Y., et al. Molecular cloning and characterization of a putative lipopolysaccharide-induced TNF-α factor (LITAF) gene homologue from zhikong scallop Chlamys farreri. Fish Shellfish Immunol 23 (2007) 419-429
49. Gourdon I., Guerin M.C., and Torreilles J. Cellular and molecular mechanisms of the stress response in marine bivalves. C R Soc Biol 192 (1998) 749-774
50. Afonso V., Champy R., Mitrovic D., Collin P., and Lomri A. Reactive oxygen species and superoxide dismutases: role in joint diseases. Joint Bone Spine 74 (2007) 324-329
51. Manduzio H., Monsinjon T., Galap C., Leboulenger F., and Rocher B. Seasonal variations in antioxidant defences in blue mussels Mytilus edulis collected from a polluted area: major contributions in gills of an inducible isoform of Cu/Zn-superoxide dismutase and of glutathione S-transferase. Aquat Toxicol 7 (2004) 83-93
52. Mittapalli O., Neal J.J., and Shukle R.H. Antioxidant defense response in a galling insect. Proc Natl Acad Sci U S A 104 (2007) 1889-1894
53. Ni D., Song L., Gao Q., Wu L., Yu Y., Zhao J., et al. The cDNA cloning and mRNA expression of cytoplasmic Cu, Zn superoxide dismutase (SOD) gene in scallop Chlamys farreri. Fish Shellfish Immunol 23 (2007) 1032-1042
54. Cong M., Ni D., Song L., Wang L., Zhao J., Qiu L., et al. Molecular cloning, characterization and mRNA expression of peroxiredoxin in zhikong scallop Chlamys farreri. Mol Biol Rep (2008 Aug 14) [Epub ahead of print]
55. Li C., Ni D., Song L., Zhao J., Zhang H., and Li L. Molecular cloning and characterization of a catalase gene from zhikong scallop Chlamys farreri. Fish Shellfish Immunol 24 (2008) 26-34
56. Sheehan D., Meade G., Foley V.M., and Dowd C.A. Structure, function and evolution of glutathione transferases: implications for classification of non-mammalian members of an ancient enzyme superfamily. Biochem J 360 Pt 1 (2001) 1-16
57. Song X., Wang L., Song L., Zhao J., Zhang H., Zheng P., et al. A cyclophilin A inducible expressed in gonad of zhikong scallop Chlamys farreri. Mol Biol Rep (2008 Sep 26) [Epub ahead of print]
58. Feder M.E., and Hofmann G.E. Heat-shock proteins, molecular chaperones, and the stress response: evolutionary and ecological physiology. Annu Rev Physiol 61 (1999) 243-282
59. Lindquist S., and Craig E.A. The heat-shock proteins. Annu Rev Genet 22 (1988) 631-677
60. Gao Q., Song L., Ni D., Wu L., Zhang H., and Chang Y. cDNA cloning and mRNA expression of heat shock protein 90 gene in the haemocytes of zhikong scallop Chlamys farreri. Comp Biochem Physiol B 147 (2007) 704-715
61. Zandman-Goddard G., and Shoenfeld Y. Ferritin in autoimmune diseases. Autoimmun Rev 6 (2007) 457-463
62. Song L., Zou H., Chang Y., Xu W., and Wu L. The cDNA cloning and mRNA expression of a potential selenium-binding protein gene in the scallop Chlamys farreri. Dev Comp Immunol 30 (2006) 265-273
63. Mason A.Z., and Jenkins K.D. Metal detoxification in aquatic organisms. In: Tessier A., and Turner D.R. (Eds). Metal speciation and bioavailability in aquatic systems (1995), John Wiley and Sons Ltd., New York 478-608
64. Buico A., Cassino C., Dondero F., Vergani L., and Osell D. Radical scavenging abilities of fish MT-A and mussel MT-10 metallothionein isoforms: an ESR study. J Inorg Biochem 102 (2008) 921-927
65. Patston P.A. Serpins and other serine protease inhibitors. Immunol Today 21 (2000 Jul) 354
66. Ashida M., and Brey P.T. Recent advances on the research of the insect prophenoloxidase cascade. In: Brey P.T., and Hultmark D. (Eds). Molecular mechanisms of immune responses in insects (1998), Chapman and Hall, London 135-172
67. Zhu L., Song L., Zhao J., Xu W., and Chang Y. Molecular cloning, characterization and expression of a serine protease with clip-domain homologue from scallop Chlamys farreri. Fish Shellfish Immunol 22 (2007) 556-566
68. Zhu L., Song L., Mao Y., Zhao J., Li C., and Xu W. A novel serine protease with clip domain from scallop Chlamys farreri. Mol Biol Rep 35 (2008) 257-264
69. Zhu L., Song L., Chang Y., Xu W., and Wu L. Molecular cloning, characterization and expression of a novel serine proteinase inhibitor gene in bay scallops (Argopecten irradians, Lamarck 1819). Fish Shellfish Immunol 20 (2006) 320-331
70. Sommerhoff C.P., Sollner C., Mentele R., Piechottka G.P., Auerswald E.A., and Fritz H. A Kazal-type inhibitor of human mast cell tryptase: isolation from the medical leech Hirudo medicinalis, characterization, and sequence analysis. Biol Chem Hoppe-Seyler 375 (1994) 685-694
71. Wang B., Zhao J., Song L., Zhang H., Wang L., Li C., et al. Molecular cloning and expression of a novel Kazal-type serine proteinase inhibitor gene from zhikong scallop Chlamys farreri, and the inhibitory activity of its recombinant domain. Fish Shellfish Immunol 24 (2008) 629-637
72. Hiemstra P.S. Novel roles of protease inhibitors in infection and inflammation. Biochem Soc Trans 30 (2002) 116-120
73. Vasiljeva O., Reinheckel T., Peters C., Turk D., Turk V., and Turk B. Emerging roles of cysteine cathepsins in disease and their potential as drug targets. Curr Pharm Des 13 (2007) 385-401
74. Conus S., and Simon H.U. Cathepsins: key modulators of cell death and inflammatory responses. Biochem Pharmacol 76 (2008) 1374-1382
75. Hsing L.C., and Rudensky A.Y. The lysosomal cysteine proteases in MHC class II antigen presentation. Immunol Rev 207 (2005) 229-241
76. Kagedal K., Johansson U., and Ollinger K. The lysosomal protease cathepsin D mediates apoptosis induced by oxidative stress. FASEB J 15 (2001) 1592-1594
77. Zhao J., Song L., Li C., Zou H., Ni D., Wang W., et al. Molecular cloning of an invertebrate goose-type lysozyme gene from Chlamys farreri, and lytic activity of the recombinant protein. Mol Immunol 44 (2007) 1198-1208
78. Grunclová L., Fouquier H., Hypsa V., and Kopácek P. Lysozyme from the gut of the soft tick Ornithodoros moubata: the sequence, phylogeny and post-feeding regulation. Dev Comp Immunol 27 (2003) 651-660
79. Hikima S., Hikima J., Rojtinnakorn J., Hirono I., and Aoki T. Characterization and function of kuruma shrimp lysozyme possessing lytic activity against Vibrio species. Gene 316 (2003) 187-195
80. Hikima J., Minagawa S., Hirono I., and Aoki T. Molecular cloning, expression and evolution of the Japanese flounder goose-type lysozyme gene, and the lytic activity of its recombinant protein. Biochim Biophys Acta 1520 (2001) 35-44
81. Smith L.C., Clow L.A., and Terwilliger D.P. The ancestral complement system in sea urchins. Immunol Rev 180 (2001) 16-34
82. Zhu Y., Thangamani S., Ho B., and Ding J.L. The ancient origin of the complement system. EMBO J 24 (2005) 382-394
83. Volanakis J.E. In: Volanakis J.E., and Frank M.M. (Eds). The human complement system in health and disease (1998), Marcel Deiierk Inc, New York 9-32
84. Zhang H., Song L., Li C., Zhao J., Wang H., Qiu L., et al. A novel C1q-domain-containing protein from zhikong scallop Chlamys farreri with lipopolysaccharide binding activity. Fish Shellfish Immunol 25 (2008) 281-289
85. Volanakis J.E. Overview of the complement system (1998), Dekker, New York
86. Zhang H., Song L., Li C., Zhao J., Wang H., Gao Q., et al. Molecular cloning and characterization of a thioester-containing protein from zhikong scallop Chlamys farreri. Mol Immunol 44 (2007) 3492-3500