Allelic variation at Psy1-A1 and association with yellow pigment in durum wheat grain

Theoretical and Applied Genetics

Volumn 118, Issue 8, 2009, Pages 1539-1548

  Singh, A ^a   Reimer, S ^a   Pozniak, C J ^a   Clarke, F R ^b   Clarke, J M ^b   Knox, R E ^b   Singh, A K ^b  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

^b SWIFT CURRENT RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELIC VARIATIONS; BIOSYNTHETIC PATHWAYS; BREEDING LINES; CAROTENOID PIGMENTS; DISTAL REGIONS; DURUM WHEAT CULTIVARS; DURUM WHEATS; END USE; GENETIC MAPPINGS; MAPPING POPULATIONS; PHYTOENE SYNTHASE; QTL MAPPINGS; QUANTITATIVE TRAIT LOCUS; RATE-LIMITING ENZYMES; TRITICUM;

CHROMOSOMES; ENZYMES; PLANTS (BOTANY); POPULATION STATISTICS; SODIUM COMPOUNDS;

GRAIN (AGRICULTURAL PRODUCT);

COMPLEMENTARY DNA; PHYTOENE SYNTHASE; PLANT DNA; TRANSFERASE;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CHROMOSOME MAP; CROSS BREEDING; EXON; GENETIC MARKER; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; HAPLOIDY; INTRON; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PIGMENTATION; PLANT CHROMOSOME; PLANT GENE; QUANTITATIVE TRAIT LOCUS; SEQUENCE HOMOLOGY; WHEAT;

ALKYL AND ARYL TRANSFERASES; ALLELES; AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CLONING, MOLECULAR; CROSSES, GENETIC; DNA, COMPLEMENTARY; DNA, PLANT; EXONS; GENES, PLANT; GENETIC MARKERS; GENETIC VARIATION; HAPLOIDY; INTRONS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PIGMENTATION; QUANTITATIVE TRAIT LOCI; RECOMBINATION, GENETIC; SEQUENCE HOMOLOGY, AMINO ACID; TRITICUM;

SEMOLINA; TRITICUM AESTIVUM; TRITICUM TURGIDUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 67349259037     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1001-x     Document Type: Article

References (43)

1. American Association for Cereal Chemistry (2000) Approved methods of the AACC-method, 10th edn. St. Paul, Minnesota, pp 14-50
2. SG Atienza J Ballesteros A Martín D Hornero-Méndez 2007 Genetic variability of carotenoid concentration and degree of esterification among Tritordeum (×Tritordeum Ascherson et Graebner) and durum wheat accessions Agric Food Chem 55 4244 4251
3. GM Borrelli A Troccolo N Di Fonzo C Fares 1999 Durum wheat lipoxygenase activity and other quality parameters that affect pasta colour Cereal Chem 76 335 340
4. PK Burkhardt P Beyer J Wunn A Kloti GA Armstrong M Schledz J von Lintig I Potrykus 1997 Transgenic rice (Oryza sativa) endosperm expressing daffodil (Narcissus pseudonarcissus) phytoene synthase accumulates phytoene, a key intermediate of provitamin A biosynthesis Plant J 11 1071 1078
5. A Cenci S Somma N Chantret J Dubcovsky A Blanco 2004 PCR identification of durum wheat BAC clones containing genes coding for carotenoid biosynthesis enzymes and their chromosome localization Genome 47 911 917
6. Cervigni G, Zhang W, Picca A, Carrera A, Helguera M, Manthey F, Miranda R, Dubcovsky J, Echenique V (2005) QTL mapping for LOX Activity and quality traits in durum wheat. In: Proceedings of the 7th international wheat conference. SAGPyA/INTA. Mar del Plata, Argentina, 27 November-2 December
7. JM Clarke TN McCaig RM DePauw RE Knox FR Clarke MR Fernandez NP Ames 2005 Strongfield durum wheat Can J Plant Sci 85 651 654
8. JM Clarke TN McCaig RM DePauw RE Knox NP Ames FR Clarke MR Fernandez BA Marchylo JE Dexter 2005 Commander durum wheat Can J Plant Sci 85 901 904
9. FR Clarke JM Clarke TN McCaig RE Knox RM DePauw 2006 Inheritance of yellow pigment in concentration in four durum wheat crosses Can J Plant Sci 86 133 141
10. V Corona B Aracri G Kosturkova GE Bartley L Pitto L Giorgette PA Scolnik G Giuliano 1996 Regulation of a carotenoid biosynthesis gene promoter during plant development Plant J 9 505 512
11. FX Cunningham Jr B Pogson ZR Sun KA McDonald D Della Penna E Gantt 1996 Functional analysis of the β and lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation Plant Cell 8 1613 1626
12. I Elouafi MM Nachit LM Martin 2001 Identification of a microsatellite on chromosome 7B showing a strong linkage with yellow pigment in durum wheat (Triticum turgidum L. var. durum) Hereditas 135 255 261
13. CE Gallagher PD Matthews F Li ET Wurtzel 2004 Gene duplication in the carotenoid biosynthetic pathway preceded evolution of the grasses Plant Physiol 135 1776 1783
14. XY He YL Zhang ZH He YP Wu YG Xiao CX Ma XC Xia 2008 Characterization of Phytoene synthase 1 gene (Psy1) located on common wheat chromosome 7A and development of a functional marker Theor Appl Genet 116 213 221
15. V Hentschel K Kranl J Hollmann MG Lindhauer V Bohm R Bitsch 2002 Spectrophotometric determination of yellow pigment content and evaluation of carotenoids by high-performance liquid chromatography in durum wheat grain J Agric Food Chem 50 6663 6668
16. TG Hessler MJ Thomson D Benscher MM Nachit ME Sorrells 2002 Association of a lipoxygenase locus, Lpx-B1, with variation in lipoxygenase activity in durum wheat seeds Crop Sci 42 1695 1700
17. J Hirschberg 2001 Carotenoid biosynthesis in flowering plants Curr Opin Plant Biol 4 210 218
18. RA Johnston JS Quick JJ Hammond 1983 Inheritance of semolina color in six durum wheat crosses Crop Sci 23 607 610
19. Knapp SJ (2001) Mapping quantitative trait loci. In: Phillips RI, Vasil IK (eds) DNA-based markers in plants. Kluwer, Netherlands, pp 59-99
20. RE Knox JM Clarke RM DePauw 2000 Dicamba and growth condition effects on doubled haploid production in durum wheat crossed with maize Plant Breed 119 289 298
21. H Kuchel P Langridge L Mosionek K Williams SP Jefferies 2006 The genetic control of milling yield, dough rheology and baking quality of wheat Theor Appl Genet 112 1487 1495
22. M La Rota ME Sorrells 2004 Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat Funct Integr Genomics 4 34 46
23. DW Lee S Lee GJ Lee KH Lee S Kim GW Cheong I Hwang 2006 Functional characterization of sequence motifs in the transit peptide of Arabidopsis small subunit of Rubisco Plant Physiol 140 466 483
24. F Li R Vallabhaneni J Yu T Rocheford ET Wurtzel 2008 The maize phytoene synthase gene family: overlapping roles for carotenogenesis in endosperm, photomorphogenesis, and thermal stress tolerance Plant Physiol 147 1334 1346
25. LO Lindgren KG Stalberg AS Hoglund 2003 Seed-specific overexpression of an endogenous Arabidopsis phytoene synthase gene results in delayed germination and increased levels of carotenoids, chlorophyll, and abscisic acid Plant Physiol 132 779 785
26. Littell RC, Milliken GA, Stroup WW, Wolfinger RD (1996) SAS system for mixed models. SAS Institute Inc., Cary
27. Lynch M, Walsh JB (1998) Genetics and analysis of quantitative traits. Sinauer Assocs., Inc., Sunderland
28. DJ Mares AW Campbell 2001 Mapping components of flour and noodle colour in Australian wheat Aust J Agric Res 52 1297 1309
29. RR Matsuo JE Dexter 1980 Relationship between some durum wheat physical characteristics and semolina milling properties Can J Plant Sci 60 49 53
30. TN McCaig JG McLeod JM Clarke RM DePauw 1992 Measurement of durum pigment with an NIR instrument operating in the visible range Cereal Chem 69 671 672
31. G Panfili A Fratianni M Irano 2004 Improved normal-phase high-performance liquid chromatography procedure for the determination of carotenoids in cereals J Agric Food Chem 52 6373 6377
32. GD Parker KJ Chalmers AJ Rathjen P Langridge 1998 Mapping loci associated with flour color in wheat Theor Appl Genet 97 238 245
33. RM Patil MD Oak SA Tamhankar P Sourdille VS Rao 2008 Mapping and validation of a major QTL for yellow pigment content on 7AL in durum wheat (Triticum turgidum L. ssp durum) Mol Breed 21 485 496
34. CJ Pozniak RE Knox FR Clarke JM Clarke 2007 Identification of QTL and association of a phytoene synthase gene with endosperm colour in durum wheat Theor Appl Genet 114 525 537
35. SO Reimer CJ Pozniak FR Clarke JM Clarke DJ Somers RE Knox AK Singh 2008 Association mapping of yellow pigment in an elite collection of durum wheat cultivars and breeding lines Genome 51 1016 1025
36. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
37. M Schuelke 2000 An economic method for the fluorescent labeling of PCR fragments Nat Biotech 18 233 234
38. DJ Somers P Isaac K Edwards 2004 A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) Theor Appl Genet 109 1105 1114
39. DJ Somers G Fedak J Clarke C Wenguang 2006 Mapping of FHB resistance QTLs in tetraploid wheat Genome 49 1586 1593
40. A Troccoli GM Borrelli P De Vita C Fares N Di Fonzo 2000 Durum wheat quality: a multidisciplinary concept J. Cereal Sci 32 99 113
41. van Ooijen JW, Voorips RE (2004) JoinMap Version 3.0, Software for the calculation of genetic linkage maps. Kyazma BV, Wageningen
42. W Zhang J Dubcovsky 2008 Association between allelic variation at the Phytoene synthase 1 gene and yellow pigment content in the wheat grain Theor Appl Genet 116 635 645
43. W Zhang S Chao F Manthey O Chicaiza JC Brevis V Echenique J Dubcovsky 2008 QTL analysis of pasta quality using a composite microsatellite and SNP map of durum wheat Theor Appl Genet 117 1361 1377