메뉴 건너뛰기




Volumn 89, Issue 3, 2009, Pages 233-237

Comparison of four-colour IS6110-fAFLP with the classic IS6110-RFLP on the ability to detect recent transmission in the city of Barcelona, Spain

Author keywords

Fluorescent AFLP analysis; IS6110; Molecular typing; Mycobacterium tuberculosis; RFLP

Indexed keywords

BACTERIAL DNA;

EID: 67349221462     PISSN: 14729792     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tube.2009.03.003     Document Type: Article
Times cited : (3)

References (27)
  • 1
    • 0027498478 scopus 로고
    • Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology
    • Van Embden J.D., Cave M.D., Crawford J.T., Dale J.W., Eisenach K.D., Gicquel B., et al. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 31 2 (1993) 406-409
    • (1993) J Clin Microbiol , vol.31 , Issue.2 , pp. 406-409
    • Van Embden, J.D.1    Cave, M.D.2    Crawford, J.T.3    Dale, J.W.4    Eisenach, K.D.5    Gicquel, B.6
  • 3
    • 0028287309 scopus 로고
    • Transmission of tuberculosis in New York city. An analysis by DNA fingerprinting and conventional epidemiologic methods
    • Alland D., Kalkut G.E., Moss A.R., McAdam R.A., Hahn J.A., Bosworth W., et al. Transmission of tuberculosis in New York city. An analysis by DNA fingerprinting and conventional epidemiologic methods. N Engl J Med 330 24 (1994) 1710-1716
    • (1994) N Engl J Med , vol.330 , Issue.24 , pp. 1710-1716
    • Alland, D.1    Kalkut, G.E.2    Moss, A.R.3    McAdam, R.A.4    Hahn, J.A.5    Bosworth, W.6
  • 4
    • 0036848889 scopus 로고    scopus 로고
    • Molecular epidemiology of tuberculosis in a low- to moderate-incidence state: are contact investigations enough?
    • Cronin W.A., Golub J.E., Lathan M.J., Mukasa L.N., Hooper N., Razeq J.H., et al. Molecular epidemiology of tuberculosis in a low- to moderate-incidence state: are contact investigations enough?. Emerg Infect Dis 8 11 (2002) 1271-1279
    • (2002) Emerg Infect Dis , vol.8 , Issue.11 , pp. 1271-1279
    • Cronin, W.A.1    Golub, J.E.2    Lathan, M.J.3    Mukasa, L.N.4    Hooper, N.5    Razeq, J.H.6
  • 5
    • 4544331356 scopus 로고    scopus 로고
    • Added epidemiologic value to tuberculosis prevention and control of the investigation of clustered genotypes of Mycobacterium tuberculosis isolates
    • 10.1093/aje/kwh253 [doi]; 160/6/589 [pii]
    • McNabb S.J., Kammerer J.S., Hickey A.C., Braden C.R., Shang N., Rosenblum L.S., et al. Added epidemiologic value to tuberculosis prevention and control of the investigation of clustered genotypes of Mycobacterium tuberculosis isolates. Am J Epidemiol 160 6 (2004 Sep 15) 589-597 10.1093/aje/kwh253 [doi]; 160/6/589 [pii]
    • (2004) Am J Epidemiol , vol.160 , Issue.6 , pp. 589-597
    • McNabb, S.J.1    Kammerer, J.S.2    Hickey, A.C.3    Braden, C.R.4    Shang, N.5    Rosenblum, L.S.6
  • 6
    • 34047262513 scopus 로고    scopus 로고
    • Utility of genotyping of Mycobacterium tuberculosis in the contact investigation: a decision analysis
    • 10.1016/j.tube.2006.10.003
    • Sintchenko V., and Gilbert G.L. Utility of genotyping of Mycobacterium tuberculosis in the contact investigation: a decision analysis. Tuberculosis (Edinb) 87 3 (2007) 176-184 10.1016/j.tube.2006.10.003
    • (2007) Tuberculosis (Edinb) , vol.87 , Issue.3 , pp. 176-184
    • Sintchenko, V.1    Gilbert, G.L.2
  • 7
    • 1642570282 scopus 로고    scopus 로고
    • Clustered tuberculosis cases: do they represent recent transmission and can they be detected earlier?
    • 10.1164/rccm.200306-856
    • Van Deutekom H., Hoijng S.P., de Haas P.E., Langendam M.W., Horsman A., van Soolingen D., et al. Clustered tuberculosis cases: do they represent recent transmission and can they be detected earlier?. Am J Respir Crit Care Med 169 7 (2004 Apr 1) 806-810 10.1164/rccm.200306-856
    • (2004) Am J Respir Crit Care Med , vol.169 , Issue.7 , pp. 806-810
    • Van Deutekom, H.1    Hoijng, S.P.2    de Haas, P.E.3    Langendam, M.W.4    Horsman, A.5    van Soolingen, D.6
  • 8
    • 0036165855 scopus 로고    scopus 로고
    • Epidemiology of tuberculosis in Hamburg, Germany: long-term population-based analysis applying classical and molecular epidemiological techniques
    • Diel R., Schneider S., Meywald-Walter K., Ruf C.M., Rusch-Gerdes S., and Niemann S. Epidemiology of tuberculosis in Hamburg, Germany: long-term population-based analysis applying classical and molecular epidemiological techniques. J Clin Microbiol 40 2 (2002) 532-539
    • (2002) J Clin Microbiol , vol.40 , Issue.2 , pp. 532-539
    • Diel, R.1    Schneider, S.2    Meywald-Walter, K.3    Ruf, C.M.4    Rusch-Gerdes, S.5    Niemann, S.6
  • 9
    • 0345074118 scopus 로고    scopus 로고
    • Annual Mycobacterium tuberculosis infection risk and interpretation of clustering statistics
    • Vynnycky E., Borgdorff M.W., van Soolingen D., and Fine P.E. Annual Mycobacterium tuberculosis infection risk and interpretation of clustering statistics. Emerg Infect Dis 9 2 (2003) 176-183
    • (2003) Emerg Infect Dis , vol.9 , Issue.2 , pp. 176-183
    • Vynnycky, E.1    Borgdorff, M.W.2    van Soolingen, D.3    Fine, P.E.4
  • 10
    • 0034870707 scopus 로고    scopus 로고
    • Molecular evidence for independent occurrence of IS6110 insertions at the same sites of the genome of Mycobacterium tuberculosis in different clinical isolates
    • Fang Z., Kenna D.T., Doig C., Smittipat D.N., Palittapongarnpim P., Watt B., et al. Molecular evidence for independent occurrence of IS6110 insertions at the same sites of the genome of Mycobacterium tuberculosis in different clinical isolates. J Bacteriol 183 18 (2001) 5279-5284
    • (2001) J Bacteriol , vol.183 , Issue.18 , pp. 5279-5284
    • Fang, Z.1    Kenna, D.T.2    Doig, C.3    Smittipat, D.N.4    Palittapongarnpim, P.5    Watt, B.6
  • 11
    • 0031060015 scopus 로고    scopus 로고
    • Use of a PCR method based on IS6110 polymorphism for typing Mycobacterium tuberculosis strains from BACTEC cultures
    • Otal I., Samper S., Asensio M.P., Vitoria M.A., Rubio M.C., Gomez-Lus R., et al. Use of a PCR method based on IS6110 polymorphism for typing Mycobacterium tuberculosis strains from BACTEC cultures. J Clin Microbiol 35 1 (1997) 273-277
    • (1997) J Clin Microbiol , vol.35 , Issue.1 , pp. 273-277
    • Otal, I.1    Samper, S.2    Asensio, M.P.3    Vitoria, M.A.4    Rubio, M.C.5    Gomez-Lus, R.6
  • 12
    • 0031692843 scopus 로고    scopus 로고
    • Evaluation of strategies for molecular fingerprinting for use in the routine work of a Mycobacterium reference unit
    • Wilson S.M., Goss S., and Drobniewski F. Evaluation of strategies for molecular fingerprinting for use in the routine work of a Mycobacterium reference unit. J Clin Microbiol 36 11 (1998) 3385-3388
    • (1998) J Clin Microbiol , vol.36 , Issue.11 , pp. 3385-3388
    • Wilson, S.M.1    Goss, S.2    Drobniewski, F.3
  • 13
    • 27744491175 scopus 로고    scopus 로고
    • Fast ligation-mediated PCR, a fast and reliable method for IS6110-based typing of Mycobacterium tuberculosis complex
    • 10.1128/JCM.43.11.5622-5627.2005
    • Reisig F., Kremer K., Amthor B., van Soolingen D., and Haas W.H. Fast ligation-mediated PCR, a fast and reliable method for IS6110-based typing of Mycobacterium tuberculosis complex. J Clin Microbiol 43 11 (2005 Nov) 5622-5627 10.1128/JCM.43.11.5622-5627.2005
    • (2005) J Clin Microbiol , vol.43 , Issue.11 , pp. 5622-5627
    • Reisig, F.1    Kremer, K.2    Amthor, B.3    van Soolingen, D.4    Haas, W.H.5
  • 14
    • 0031705719 scopus 로고    scopus 로고
    • Molecular fingerprinting of Mycobacterium tuberculosis isolates obtained in Havana, Cuba, by IS6110 restriction fragment length polymorphism analysis and by the double-repetitive-element PCR method
    • Montoro E., Valdivia J., and Leao S.C. Molecular fingerprinting of Mycobacterium tuberculosis isolates obtained in Havana, Cuba, by IS6110 restriction fragment length polymorphism analysis and by the double-repetitive-element PCR method. J Clin Microbiol 36 10 (1998) 3099-3102
    • (1998) J Clin Microbiol , vol.36 , Issue.10 , pp. 3099-3102
    • Montoro, E.1    Valdivia, J.2    Leao, S.C.3
  • 15
    • 34548541314 scopus 로고    scopus 로고
    • An IS6110-targeting fluorescent amplified fragment length polymorphism alternative to IS6110 restriction fragment length polymorphism analysis for Mycobacterium tuberculosis DNA fingerprinting
    • 10.1111/j.1469-0691.2007.01783.x
    • Thorne N., Evans J.T., Smith E.G., Hawkey P.M., Gharbia S., and Arnold C. An IS6110-targeting fluorescent amplified fragment length polymorphism alternative to IS6110 restriction fragment length polymorphism analysis for Mycobacterium tuberculosis DNA fingerprinting. Clin Microbiol Infect 13 10 (2007 Oct) 964-970 10.1111/j.1469-0691.2007.01783.x
    • (2007) Clin Microbiol Infect , vol.13 , Issue.10 , pp. 964-970
    • Thorne, N.1    Evans, J.T.2    Smith, E.G.3    Hawkey, P.M.4    Gharbia, S.5    Arnold, C.6
  • 16
    • 58849149993 scopus 로고    scopus 로고
    • Factors associated with differences between conventional contact tracing and molecular epidemiology in study of tuberculosis transmission and analysis in the city of Barcelona, Spain
    • Borrell S., Espanol M., Orcau A., Tudo G., March F., Cayla J.A., et al. Factors associated with differences between conventional contact tracing and molecular epidemiology in study of tuberculosis transmission and analysis in the city of Barcelona, Spain. J Clin Microbiol 47 1 (2009 Jan) 198-204
    • (2009) J Clin Microbiol , vol.47 , Issue.1 , pp. 198-204
    • Borrell, S.1    Espanol, M.2    Orcau, A.3    Tudo, G.4    March, F.5    Cayla, J.A.6
  • 17
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan S., Pan X., Stockbauer K.E., Connell N.D., Kreiswirth B.N., Whittam T.S., et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci U S A 94 18 (1997) 9869-9874
    • (1997) Proc Natl Acad Sci U S A , vol.94 , Issue.18 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.E.3    Connell, N.D.4    Kreiswirth, B.N.5    Whittam, T.S.6
  • 18
    • 0025952233 scopus 로고
    • Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis
    • Van Soolingen D., Hermans P.W., de Haas P.E., Soll D.R., and van Embden J.D. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29 11 (1991) 2578-2586
    • (1991) J Clin Microbiol , vol.29 , Issue.11 , pp. 2578-2586
    • Van Soolingen, D.1    Hermans, P.W.2    de Haas, P.E.3    Soll, D.R.4    van Embden, J.D.5
  • 19
    • 33750083037 scopus 로고    scopus 로고
    • Molecular epidemiology of tuberculosis: current insights
    • 10.1128/CMR.00061-05
    • Mathema B., Kurepina N.E., Bifani P.J., and Kreiswirth B.N. Molecular epidemiology of tuberculosis: current insights. Clin Microbiol Rev 19 4 (2006 Oct) 658-685 10.1128/CMR.00061-05
    • (2006) Clin Microbiol Rev , vol.19 , Issue.4 , pp. 658-685
    • Mathema, B.1    Kurepina, N.E.2    Bifani, P.J.3    Kreiswirth, B.N.4
  • 20
    • 0034462389 scopus 로고    scopus 로고
    • Genetic heterogeneity in Mycobacterium tuberculosis isolates reflected in IS6110 restriction fragment length polymorphism patterns as low-intensity bands
    • De Boer A.S., Kremer K., Borgdorff M.W., de Haas P.E., Heersma H.F., and van Soolingen D. Genetic heterogeneity in Mycobacterium tuberculosis isolates reflected in IS6110 restriction fragment length polymorphism patterns as low-intensity bands. J Clin Microbiol 38 12 (2000) 4478-4484
    • (2000) J Clin Microbiol , vol.38 , Issue.12 , pp. 4478-4484
    • De Boer, A.S.1    Kremer, K.2    Borgdorff, M.W.3    de Haas, P.E.4    Heersma, H.F.5    van Soolingen, D.6
  • 21
    • 0036207878 scopus 로고    scopus 로고
    • Evolution of the IS6110-based restriction fragment length polymorphism pattern during the transmission of Mycobacterium tuberculosis
    • Warren R.M., van der Spuy G.D., Richardson M., Beyers N., Booysen C., Behr M.A., et al. Evolution of the IS6110-based restriction fragment length polymorphism pattern during the transmission of Mycobacterium tuberculosis. J Clin Microbiol 40 4 (2002) 1277-1282
    • (2002) J Clin Microbiol , vol.40 , Issue.4 , pp. 1277-1282
    • Warren, R.M.1    van der Spuy, G.D.2    Richardson, M.3    Beyers, N.4    Booysen, C.5    Behr, M.A.6
  • 22
    • 0027229397 scopus 로고
    • Characterization of Mycobacterium tuberculosis strains from Vietnamese patients by southern blot hybridization
    • Yuen L.K., Ross B.C., Jackson K.M., and Dwyer B. Characterization of Mycobacterium tuberculosis strains from Vietnamese patients by southern blot hybridization. J Clin Microbiol 31 6 (1993) 1615-1618
    • (1993) J Clin Microbiol , vol.31 , Issue.6 , pp. 1615-1618
    • Yuen, L.K.1    Ross, B.C.2    Jackson, K.M.3    Dwyer, B.4
  • 23
    • 0033375318 scopus 로고    scopus 로고
    • Analysis of rate of change of IS6110 RFLP patterns of Mycobacterium tuberculosis based on serial patient isolates
    • De Boer A.S., Borgdorff M.W., de Haas P.E., Nagelkerke N.J., van Embden J.D., and van Soolingen D. Analysis of rate of change of IS6110 RFLP patterns of Mycobacterium tuberculosis based on serial patient isolates. J Infect Dis 180 4 (1999) 1238-1244
    • (1999) J Infect Dis , vol.180 , Issue.4 , pp. 1238-1244
    • De Boer, A.S.1    Borgdorff, M.W.2    de Haas, P.E.3    Nagelkerke, N.J.4    van Embden, J.D.5    van Soolingen, D.6
  • 24
    • 0032927421 scopus 로고    scopus 로고
    • Stability of Mycobacterium tuberculosis IS6110 restriction fragment length polymorphism patterns and spoligotypes determined by analyzing serial isolates from patients with drug-resistant tuberculosis
    • Niemann S., Richter E., and Rusch-Gerdes S. Stability of Mycobacterium tuberculosis IS6110 restriction fragment length polymorphism patterns and spoligotypes determined by analyzing serial isolates from patients with drug-resistant tuberculosis. J Clin Microbiol 37 2 (1999) 409-412
    • (1999) J Clin Microbiol , vol.37 , Issue.2 , pp. 409-412
    • Niemann, S.1    Richter, E.2    Rusch-Gerdes, S.3
  • 25
    • 0342646901 scopus 로고    scopus 로고
    • Stability of IS6110 restriction fragment length polymorphism patterns of Mycobacterium tuberculosis strains in actual chains of transmission
    • Niemann S., Rusch-Gerdes S., Richter E., Thielen H., Heykes-Uden H., and Diel R. Stability of IS6110 restriction fragment length polymorphism patterns of Mycobacterium tuberculosis strains in actual chains of transmission. J Clin Microbiol 38 7 (2000) 2563-2567
    • (2000) J Clin Microbiol , vol.38 , Issue.7 , pp. 2563-2567
    • Niemann, S.1    Rusch-Gerdes, S.2    Richter, E.3    Thielen, H.4    Heykes-Uden, H.5    Diel, R.6
  • 26
    • 0141656318 scopus 로고    scopus 로고
    • Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis
    • Rosenberg N.A., Tsolaki A.G., and Tanaka M.M. Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis. Theor Popul Biol 63 4 (2003) 347-363
    • (2003) Theor Popul Biol , vol.63 , Issue.4 , pp. 347-363
    • Rosenberg, N.A.1    Tsolaki, A.G.2    Tanaka, M.M.3
  • 27
    • 0032722735 scopus 로고    scopus 로고
    • Context-sensitive transposition of IS6110 in mycobacteria
    • Wall S., Ghanekar K., McFadden J., and Dale J.W. Context-sensitive transposition of IS6110 in mycobacteria. Microbiology 145 Pt. 11 (1999) 3169-3176
    • (1999) Microbiology , vol.145 , Issue.PART 11 , pp. 3169-3176
    • Wall, S.1    Ghanekar, K.2    McFadden, J.3    Dale, J.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.