Raman spectroscopic analysis of cupriavidus metallidurans LMG 1195 (CH34) cultured in low-shear microgravity conditions

Microgravity Science and Technology

Volumn 21, Issue 3, 2009, Pages 217-223

  De Gelder, Joke ^a   Vandenabeele, Peter ^a   De Boever, Patrick ^b,c   Mergeay, Max ^b   Moens, Luc ^a   De Vos, Paul ^a  

^a GHENT UNIVERSITY   (Belgium)

^b BELGIAN NUCLEAR RESEARCH CENTRE   (Belgium)

^c FLEMISH INSTITUTE FOR TECHNOLOGICAL RESEARCH VITO   (Belgium)

Author keywords

Bacteria; Cupriavidus metallidurans; Metabolomics; Microgravity; PHB; Raman spectroscopy

Indexed keywords

CARBON METABOLISM; CUPRIAVIDUS METALLIDURANS; HYDROXYBUTYRATE; INCUBATION TIME; INTERFERING EFFECT; METABOLOMICS; MICROGRAVITY CONDITIONS; PHB; PHB PRODUCTION; RAMAN SPECTRA; ROTATING WALL VESSELS;

BACTERIOLOGY; BIOCHEMISTRY; CHEMICAL REACTORS; DIFFRACTION GRATINGS; METABOLISM; MICROGRAVITY PROCESSING; RAMAN SCATTERING; RAMAN SPECTROSCOPY; SONOCHEMISTRY; SPECTROSCOPIC ANALYSIS; SPECTRUM ANALYSIS;

MICROGRAVITY;

EID: 67349216643     PISSN: 09380108     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12217-008-9037-0     Document Type: Article

References (39)

1. A.J. Anderson E.A. Dawes 1990 Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates Microbiol. Rev. 54 450 472 (Pubitemid 120004382)
2. P. De Boever V.L. Ilyin D. Forget-Hanus G. Van der Auwera J. Mahillon M. Mergeay 2008 Conjugation-mediated plasmid exchange between bacteria grown under space flight conditions Microgravity Sci. Technol. 19 138 144
3. J. De Gelder K. De Gussem P. Vandenabeele P. De Vos L. Moens 2007 Methods for extracting biochemical information from bacterial Raman spectra: an explorative study on Cupriavidus metallidurans LMG 1195 Anal. Chim. Acta 585 234 240 (Pubitemid 46176806)
4. J. De Gelder K. De Gussem P. Vandenabeele L. Moens 2007 Reference database of Raman spectra of biological molecules J. Raman Spectrosc. 38 1138 1147
5. J. De Gelder P. Scheldeman K. Leus M. Heyndrickx P. Vandenabeele L. Moens P. De Vos 2007 Raman spectroscopic study of bacterial endospores Anal. Bioanal. Chem. 389 2143 2151 (Pubitemid 350198031)
6. J. De Gelder D. Willemse-Erix M.J. Scholtes J.I. Sanchez K. Maquelin P. Vandenabeele P. De Boever G.J. Puppels L. Moens P. De Vos 2008 Monitoring poly-3-hydroxybutyrate production in Cupriavidus necator DSM 428 (H16) with Raman spectroscopy Anal. Chem. 60 2155 2160
7. A.L. Demain A. Fang 2001 Secondary metabolism in simulated microgravity The Chemical Record 1 333 346 (Pubitemid 33771587)
8. L.S. England M. Gorzelak J.T. Trevors 2003 Growth and membrane polarization in Pseudomonas aeruginosa UG2 grown in randomized microgravity in a high aspect ratio vessel Biochim. Biophys. Acta 1624 76 81
9. N. Fulget L. Poughon J. Richalet Ch. Lasseur 1999 MELISSA: global control strategy of the artificial ecosystem by using first principles models of the compartments Adv. Space Res. 24 397 405
10. H. Goa P.S. Ayyaswamy P. Ducheyne 1997 Dynamics of a microcarrier particle in the simulated microgravity environment of a rotating-wall vessel Microgravity Sci. Technol. X/3 154 165 (Pubitemid 127647079)
11. F. Godia J. Albiol J.L. Montesinos J. Pérez N. Creus F. Cabello X. Mengual A. Montras Ch. Lasseur 2002 MELISSA: a loop of interconnected bioreactors to develop life support in space J. Biotechnol. 99 319 330 (Pubitemid 35223328)
12. L. Hendrickx H. De Wever V. Hermans F. Mastroleo N. Morin A. Wilmotte P. Janssen M. Mergeay 2006 Microbial ecology of the closed artificial ecosystem MELiSSA (Micro-Ecological Life Support System Alternative): reinventing and compartmentalizing the Earth's food and oxygen regeneration system for long-haul space exploration missions Res. Microbiol. 157 77 86 (Pubitemid 43202120)
13. D. Hutsebaut P. Vandenabeele L. Moens 2005 Evaluation of an accurate calibration and spectral standardization procedure for Raman spectroscopy Analyst. 130 1204 1214 (Pubitemid 41113189)
14. D. Hutsebaut J. Vandroemme J. Heyrman P. Dawyndt P. Vandenabeele L. Moens P. De Vos 2006 Raman microspectroscopy as an identification tool within the phylogenetically homogeneous 'Bacillus subtilis'-group Syst. Appl. Microbiol. 29 650 660 (Pubitemid 44717524)
15. V.K. Ilyin 2005 Microbiological status of cosmonauts during orbital spaceflights on Salyut and Mir orbital stations Acta Astronaut. 56 839 850 (Pubitemid 40467239)
16. P.H. Janssen W. Liesack C. Kluge S. Seeliger B. Schink C.G. Harfoot 1996 Sodium-dependent succinate decarboxylation by a new anaerobic bacterium belonging to the genus Peptostreptococcus Antonie Van Leeuwenhoek 70 11 20 (Pubitemid 26235912)
17. D.M. Klaus 2001 Clinostats and bioreactors Gravit. Space Biol. Bull. 14 55 64
18. J. Kiefer H.D. Pross 1999 Space radiation effects and microgravity Mutat. Res. Fundam. Mol. Mech. Mutagen. 430 299 305 (Pubitemid 30021446)
19. C. Kirschner K. Maquelin P. Pina N.A.N. Thi L.P. Choo-Smith G.D. Sockalingum C. Sandt D. Ami F. Orsini S.M. Doglia P. Allouch M. Mainfait G.J. Puppels D. Naumann 2001 Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study J. Clin. Microbiol. 39 1763 1770 (Pubitemid 32417017)
20. K.S. Lam S.W. Mamber E.J. Pack S. Forenza P.B. Fernandes D.M. Klaus 1998 The effects of space flight on the production of monorden by Humicola fuscatra WC5157 in solid-state fermentation Appl. Microbiol. Technol. 49 579 583 (Pubitemid 28267251)
21. N.M.E.J. Leys L. Hendrickx P. De Boever S. Baatout M. Mergeay 2004 Space flight effects on bacterial physiology J. Biol. Regul. Homeost. Agents 18 193 199 (Pubitemid 39378004)
22. T.Q. Lui X.Q. Li X.Y. Sun X.H. Ma Z.F. Cui 2004 Analysis on forces and movement of cultivated particles in a rotating wall vessel bioreactor Biochem. Eng. J. 18 97 104
23. S.V. Lynch K. Mukundakrishnan M.R. Benoit P.S. Ayyaswamy A. Matin 2006 Escherichia coli biofilms formed under low-shear modeled microgravity in a ground-based system Appl. Environ. Microbiol. 72 7701 7710 (Pubitemid 44927675)
24. K. Maquelin L. Dijkshoorn T.J.K. van der Reijden G.J. Puppels 2006 Rapid epidemiological analysis of Acinetobacter strains by Raman spectroscopy J. Microbiol. Methods. 64 126 131 (Pubitemid 41790493)
25. K. Maquelin C. Krischner L.P. Choo-Smith N. van den braak H.P. Endtz D. Naumann G.J. Puppels 2002 Identification of medically relevant microorganisms by vibrational spectroscopy J. Microbiol. Methods. 51 255 271 (Pubitemid 35245847)
26. H. Martens E. Stark 1991 Extended multiplicative signal correction and spectral interference subtraction: new preprocessing methods for near infrared spectroscopy J. Pharm. Biomed. Anal. 9 625 635
27. M. Mergeay 2006 Editorial Res. Microbiol. 157 1 4
28. E.A. Nauman C.M. Ott E. Sander D.L. Tucker D. Pierson J.W. Wilson C.A. Nickerson 2007 Novel quantitative biosystem for modeling physiological fluid shear stress on cells Appl. Environ. Microbiol. 73 699 705 (Pubitemid 46233484)
29. D. Naumann S. Keller D. Helm C. Schultz B. Schrader 1995 FT-IR spectroscopy and FT-Raman spectroscopy are powerful analytical tools for the non-invasive characterization of intact microbial cells J. Mol. Struct. 347 399 406
30. C.A. Nickerson C.M. Ott J.W. Wilson R. Ramamurthy C.L. LeBlanc K.H.Z. Bentrup T. Hammond D.L. Pierson 2003 Low-shear modelled microgravity: a global environmental regulatory signal affecting bacterial gene expression, physiology, and pathogenesis J. Microbiol. Methods. 54 1 11 (Pubitemid 36559595)
31. C.A. Nickerson C.M. Ott J.W. Wilson R. Ramamurthy D.J. Pierson 2004 Microbial responses to microgravity and other low-shear environments Microbiol. Mol. Biol. R. 68 345 361 (Pubitemid 38756869)
32. N. Novikova P. De Boever S. Poddubko E. Deshevaya N. Polikarpov N. Rakova I. Coninx M. Mergeay 2006 Survey of environmental biocontamination on board the international space station Res. Microbiol. 157 5 12 (Pubitemid 43202111)
33. A. Oust T. Moretro K. Naterstad G.D. Sockalingum I. Adt M. Manfait A. Kohler 2006 Fourier transform infrared and Raman spectroscopy for characterization of Listeria monocytogenes strains Appl. Environ. Microb. 72 228 232
34. H.D. Pross A. Casares J. Kiefer 2000 Induction and repair of DNA double-strand breaks under irradiation and microgravity Radiat. Res. 153 521 525 (Pubitemid 30252599)
35. H. Shi M. Shiraishi K. Shimizu 1997 Metabolic flux analysis for biosynthesis of poly(beta-hydroxybutyric acid) in Alcaligenes eutrophus from various carbon sources J. Ferment. Bioeng. 84 579 587 (Pubitemid 128752698)
36. L.Z. Tavares E.S. da Silva J.G.D. Pradella 2004 Production of pol(3-hydroxybutyrate) in an airlift bioreactor by Ralstonia eutropha Biochem. Eng. J. 18 21 31 (Pubitemid 38317124)
37. R. Thiruvenkatam C. Scholz 2000 Synthesis of poly(β-hydroxybutyrate) in simulated microgravity: an investigation of aeration profiles in shake flask and bioreactor J. Polym. Environ. 8 155 159
38. Tucker, D.L., Ott, C.M., Huff, S., Fofanov, V., Willson, R.C., Fox, G.E.: Characterization of Escherichia coli MG1655 grown in a low shear modeled microgravity environment. BMC Microbiology 7, Art. No. 15 (2007)
39. J.W. Wilson C.M. Ott K.H. Bentrup R. Ramamurthy L. Quick S. Porwollik P. Cheng M. McClelland G. Tsaprailis T. Radabaugh A. Hunt D. Fernandez E. Richter M. Shah M. Kilcoyne L. Joshi M. Neiman-Gonzalez S. Hing M. Parra P. Dumars K. Norwood R. Bober J. Devich A. Ruggles C. Goulart M. Rupert L. Stodieck P. Stafford L. Catella M.J. Schurr K. Buchanan L. Morici J. McCracken P. Allen C. Baker-Coleman T. Hammond J. Vogel R. Nelson D.L. Pierson H.M. Stefanyshyn-Piper C.A. Nickerson 2007 Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq Proc. Natl. Acad. Sci. U.S.A. 104 16299 16304 (Pubitemid 350099400)