-
1
-
-
33644878582
-
ASD: a bioinformatics resource on alternative splicing
-
Stamm S., et al. ASD: a bioinformatics resource on alternative splicing. Nucleic Acids Res. 34 (2006) D46-D55
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Stamm, S.1
-
2
-
-
33645808501
-
AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation
-
Le Texier V., et al. AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. BMC Bioinformatics 7 (2006) 169
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 169
-
-
Le Texier, V.1
-
3
-
-
33644877169
-
HOLLYWOOD: a comparative relational database of alternative splicing
-
Holste D., Huo G., Tung V., and Burge C.B. HOLLYWOOD: a comparative relational database of alternative splicing. Nucleic Acids Res. 34 (2006) D56-D62
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Holste, D.1
Huo, G.2
Tung, V.3
Burge, C.B.4
-
4
-
-
0242594493
-
Database and analyses of known alternatively spliced genes in plants
-
Zhou Y., et al. Database and analyses of known alternatively spliced genes in plants. Genomics 82 (2003) 584-595
-
(2003)
Genomics
, vol.82
, pp. 584-595
-
-
Zhou, Y.1
-
5
-
-
0002430769
-
SpliceNest: visualization of gene structure and alternative splicing based on EST clusters
-
Coward E., Haas S.A., and Vingron M. SpliceNest: visualization of gene structure and alternative splicing based on EST clusters. Trends Genet. 18 (2002) 53-55
-
(2002)
Trends Genet.
, vol.18
, pp. 53-55
-
-
Coward, E.1
Haas, S.A.2
Vingron, M.3
-
6
-
-
0036081021
-
PALS db: Putative Alternative Splicing database
-
Huang Y.H., Chen Y.T., Lai J.J., Yang S.T., and Yang U.C. PALS db: Putative Alternative Splicing database. Nucleic Acids Res. 30 (2002) 186-190
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 186-190
-
-
Huang, Y.H.1
Chen, Y.T.2
Lai, J.J.3
Yang, S.T.4
Yang, U.C.5
-
7
-
-
0035165586
-
SpliceDB: database of canonical and non-canonical mammalian splice sites
-
Burset M., Seledtsov I.A., and Solovyev V.V. SpliceDB: database of canonical and non-canonical mammalian splice sites. Nucleic Acids Res. 29 (2001) 255-259
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 255-259
-
-
Burset, M.1
Seledtsov, I.A.2
Solovyev, V.V.3
-
8
-
-
0035175280
-
AsMamDB: an alternative splice database of mammals
-
Ji H., et al. AsMamDB: an alternative splice database of mammals. Nucleic Acids Res. 29 (2001) 260-263
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 260-263
-
-
Ji, H.1
-
9
-
-
0035393343
-
Genome-wide detection of alternative splicing in expressed sequences of human genes
-
Modrek B., Resch A., Grasso C., and Lee C. Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Res. 29 (2001) 2850-2859
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2850-2859
-
-
Modrek, B.1
Resch, A.2
Grasso, C.3
Lee, C.4
-
10
-
-
0038513944
-
ProSplicer: a database of putative alternative splicing information derived from protein, mRNA and expressed sequence tag sequence data
-
Huang H.D., Horng J.T., Lee C.C., and Liu B.J. ProSplicer: a database of putative alternative splicing information derived from protein, mRNA and expressed sequence tag sequence data. Genome Biol. 4 (2003) R29
-
(2003)
Genome Biol.
, vol.4
-
-
Huang, H.D.1
Horng, J.T.2
Lee, C.C.3
Liu, B.J.4
-
11
-
-
33846036722
-
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species
-
Kim N., Alekseyenko A.V., Roy M., and Lee C. The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Res. 35 (2007) D93-D98
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kim, N.1
Alekseyenko, A.V.2
Roy, M.3
Lee, C.4
-
12
-
-
34547599504
-
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets
-
Foissac S., and Sammeth M. ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic Acids Res. 35 (2007) W297-299
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Foissac, S.1
Sammeth, M.2
-
13
-
-
33846075227
-
H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
-
Takeda J., et al. H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Res 35 (2006) D104-D109
-
(2006)
Nucleic Acids Res
, vol.35
-
-
Takeda, J.1
-
14
-
-
33646866597
-
Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns
-
Nagasaki H., Arita M., Nishizawa T., Suwa M., and Gotoh O. Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns. Bioinformatics 22 (2006) 1211-1216
-
(2006)
Bioinformatics
, vol.22
, pp. 1211-1216
-
-
Nagasaki, H.1
Arita, M.2
Nishizawa, T.3
Suwa, M.4
Gotoh, O.5
-
15
-
-
0036712421
-
Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
-
Xu Q., Modrek B., and Lee C. Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Res. 30 (2002) 3754-3766
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3754-3766
-
-
Xu, Q.1
Modrek, B.2
Lee, C.3
-
16
-
-
27944431759
-
Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction micro arrays
-
Nagao K., et al. Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction micro arrays. Hum. Mol. Genet. 14 (2005) 3379-3388
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 3379-3388
-
-
Nagao, K.1
-
17
-
-
0035252410
-
Alternative splicing: increasing diversity in the proteomic world
-
Graveley B.R. Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17 (2001) 100-107
-
(2001)
Trends Genet.
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
18
-
-
0034721644
-
Protein diversity from alternative splicing: a challenge for bioinformatics and post-genomic biology
-
Black D. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genomic biology. Cell 103 (2000) 367-370
-
(2000)
Cell
, vol.103
, pp. 367-370
-
-
Black, D.1
-
19
-
-
33846467191
-
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
-
Gardina P.J., et al. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array. BMC Genomics 27 7 (2006) 325
-
(2006)
BMC Genomics
, vol.27
, Issue.7
, pp. 325
-
-
Gardina, P.J.1
-
20
-
-
42149171235
-
Alternative splicing and expression analysis of bovine DNA methyltransferase 1
-
Russell D.F., and Betts D.H. Alternative splicing and expression analysis of bovine DNA methyltransferase 1. Dev. Dyn. 237 (2004) 1051-1059
-
(2004)
Dev. Dyn.
, vol.237
, pp. 1051-1059
-
-
Russell, D.F.1
Betts, D.H.2
-
21
-
-
0036927671
-
Defects in pre-mRNA processing as causes of and predisposition to diseases
-
Stoilov P., et al. Defects in pre-mRNA processing as causes of and predisposition to diseases. DNA Cell Biol. 21 (2002) 803-818
-
(2002)
DNA Cell Biol.
, vol.21
, pp. 803-818
-
-
Stoilov, P.1
-
22
-
-
0037443035
-
Pre-mRNA splicing and human disease
-
Faustino N.A., and Cooper T.A. Pre-mRNA splicing and human disease. Genes Dev. 17 (2003) 419-437
-
(2003)
Genes Dev.
, vol.17
, pp. 419-437
-
-
Faustino, N.A.1
Cooper, T.A.2
-
23
-
-
42449149201
-
Relating alternative splicing to proteome complexity and genome evolution
-
Xing Y., and Lee C. Relating alternative splicing to proteome complexity and genome evolution. Adv. Exp. Med. Biol. 623 (2007) 36-49
-
(2007)
Adv. Exp. Med. Biol.
, vol.623
, pp. 36-49
-
-
Xing, Y.1
Lee, C.2
-
24
-
-
34547618269
-
Evolutionary conservation of alternative splicing in chicken
-
Katyal S., Gao Z., Liu R.Z., and Godbout R. Evolutionary conservation of alternative splicing in chicken. Cytogenet. Genome Res. 117 (2007) 146-157
-
(2007)
Cytogenet. Genome Res.
, vol.117
, pp. 146-157
-
-
Katyal, S.1
Gao, Z.2
Liu, R.Z.3
Godbout, R.4
-
25
-
-
33846990531
-
Splicing and the evolution of proteins in mammals
-
Parmley J.L., Urrutia A.O., Potrzebowski L., Kaessmann H., and Hurst L.D. Splicing and the evolution of proteins in mammals. PLoS Biol. 5 (2007) e14
-
(2007)
PLoS Biol.
, vol.5
-
-
Parmley, J.L.1
Urrutia, A.O.2
Potrzebowski, L.3
Kaessmann, H.4
Hurst, L.D.5
-
26
-
-
0037062982
-
Alternative pre-mRNA splicing and proteome expansion in metazoans
-
Maniatis T., and Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature 418 (2002) 236-243
-
(2002)
Nature
, vol.418
, pp. 236-243
-
-
Maniatis, T.1
Tasic, B.2
-
28
-
-
33846057724
-
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt K.D., et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35 (2007) D61-D65
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
-
29
-
-
33748486517
-
AceView: a comprehensive cDNA-supported gene and transcripts annotation
-
Thierry-Mieg D., and Thierry-Mieg J. AceView: a comprehensive cDNA-supported gene and transcripts annotation. Genome Biol. 7 (2006) S12
-
(2006)
Genome Biol.
, vol.7
-
-
Thierry-Mieg, D.1
Thierry-Mieg, J.2
-
30
-
-
33747200891
-
Comprehensive comparisons of the current human, mouse, and rat RefSeq, Ensembl, EST, and FANTOM3 datasets: identification of new human genes with specific tissue expression profile
-
Nordstrom K.J., et al. Comprehensive comparisons of the current human, mouse, and rat RefSeq, Ensembl, EST, and FANTOM3 datasets: identification of new human genes with specific tissue expression profile. Biochem. Biophys. Res. Commun. 348 (2006) 1063-1074
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.348
, pp. 1063-1074
-
-
Nordstrom, K.J.1
-
31
-
-
12744278777
-
Comparison of the current RefSeq, Ensembl and EST databases for counting genes and gene discovery
-
Larsson T.P., Murray C.G., Hill T., Fredriksson R., and Schioth H.B. Comparison of the current RefSeq, Ensembl and EST databases for counting genes and gene discovery. FEBS Lett. 579 (2005) 690-698
-
(2005)
FEBS Lett.
, vol.579
, pp. 690-698
-
-
Larsson, T.P.1
Murray, C.G.2
Hill, T.3
Fredriksson, R.4
Schioth, H.B.5
-
32
-
-
33846681383
-
Different levels of alternative splicing among eukaryotes
-
Kim E., Magen A., and Ast G. Different levels of alternative splicing among eukaryotes. Nucleic Acids Res. 35 (2007) 125-131
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 125-131
-
-
Kim, E.1
Magen, A.2
Ast, G.3
-
33
-
-
28844443988
-
Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes
-
Nagasaki H., Arita M., Nishizawa T., Suwa M., and Gotoh O. Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes. Gene 364 (2005) 53-62
-
(2005)
Gene
, vol.364
, pp. 53-62
-
-
Nagasaki, H.1
Arita, M.2
Nishizawa, T.3
Suwa, M.4
Gotoh, O.5
-
34
-
-
34247360831
-
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes
-
Alekseyenko A.V., Kim N., and Lee C.J. Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. RNA 13 (2007) 661-670
-
(2007)
RNA
, vol.13
, pp. 661-670
-
-
Alekseyenko, A.V.1
Kim, N.2
Lee, C.J.3
-
35
-
-
33745394130
-
Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes
-
Xing Y., and Lee C. Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes. Nat. Rev. Genet. (2006) 499-509
-
(2006)
Nat. Rev. Genet.
, pp. 499-509
-
-
Xing, Y.1
Lee, C.2
-
36
-
-
36248942556
-
Global analysis of alternative splicing differences between humans and chimpanzees
-
Calarco J.A. Global analysis of alternative splicing differences between humans and chimpanzees. Genes Dev. (2007) 2963-2975
-
(2007)
Genes Dev.
, pp. 2963-2975
-
-
Calarco, J.A.1
-
37
-
-
0242636197
-
Alternative splicing and evolution
-
Stephanie B., Ivica L., and Peer B. Alternative splicing and evolution. Bioessays (2003) 1031-1034
-
(2003)
Bioessays
, pp. 1031-1034
-
-
Stephanie, B.1
Ivica, L.2
Peer, B.3
-
38
-
-
34547869583
-
EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes
-
Bhasi A., Pandey R.V., Utharasamy S.P., and Senapathy P. EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes. Bioinformatics 23 (2007) 1815-1823
-
(2007)
Bioinformatics
, vol.23
, pp. 1815-1823
-
-
Bhasi, A.1
Pandey, R.V.2
Utharasamy, S.P.3
Senapathy, P.4
-
39
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
Wheeler D.L., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 36 (2008) D13-21
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wheeler, D.L.1
-
40
-
-
13444304389
-
GenBank
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., and Sayers E.W. GenBank. Nucleic Acids Res 33 (2005) D34-D38
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
41
-
-
13444273452
-
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
-
Lee Y., et al. The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucleic Acids Res. 33 (2005) D71-D74
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Lee, Y.1
-
42
-
-
0036086991
-
Gramene: a resource for comparative grass genomics
-
Ware D., et al. Gramene: a resource for comparative grass genomics. Nucleic Acids Res. 30 (2002) 103-105
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 103-105
-
-
Ware, D.1
|