An approach for the development and selection of chromatographic methods for high-throughput metabolomic screening of urine by ultra pressure LC-ESI-ToF-MS

Metabolomics

Volumn 5, Issue 2, 2009, Pages 166-182

  Hodson, Mark P ^a,b   Dear, Gordon J ^a   Griffin, Julian L ^b   Haselden, John N ^a  

^a GLAXOSMITHKLINE   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Metabolomics; Metabonomics; Multivariate data analysis; UPLC MS; Urine

Indexed keywords

RATTUS;

EID: 67349179176     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-008-0135-1     Document Type: Article

References (39)

1. Alpert, A. J., Shukla, M., Shukla, A. K., Zieske, L. R., Yuen, S. W., Ferguson, M. A. J., et al. (1994). Hydrophilic-interaction chromatography of complex carbohydrates. Journal of Chromatography. A, 676, 191-202. doi: 10.1016/0021-9673(94)00467-6.
2. Ayrton, J., Dear, G. J., Leavens, W. J., Mallett, D. N., & Plumb, R. S. (1998). Use of generic fast gradient liquid chromatography-tandem mass spectroscopy in quantitative bioanalysis. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 709, 243-254. doi: 10.1016/S0378-4347(98)00074-7.
3. Bourcier, S., Benoist, J.-F., Clerc, F., Rigal, O., Taghi, M., & Hoppilliard, Y. (2006). Detection of 28 neurotransmitters and related compounds in biological fluids by liquid chromatography/tandem mass spectrometry. Rapid Communications in Mass Spectrometry, 20, 1405-1421. doi: 10.1002/rcm.2459.
4. Brown, S. D., White, C. A., & Bartlett, M. G. (2002). Hydrophilic interaction liquid chromatography/electrospray mass spectrometry determination of acyclovir in pregnant rat plasma and tissues. Rapid Communications in Mass Spectrometry, 16, 1871-1876. doi: 10.1002/rcm.792.
5. Bruggink, C., Maurer, R., Herrmann, H., Cavalli, S., & Hoefler, F. (2005). Analysis of carbohydrates by anion exchange chromatography and mass spectrometry. Journal of Chromatography. A, 1085, 104-109. doi: 10.1016/j.chroma.2005.03.108.
6. Concha-Herrera, V., Vivo-Truyols, G., Torres-Lapasio, J. R., & Garcia-Alvarez-Coque, M. C. (2005). Limits of multi-linear gradient optimisation in reversed-phase liquid chromatography. Journal of Chromatography. A, 1063, 79-88. doi: 10.1016/j.chroma.2004.12.001.
7. Concha-Herrera, V., Torres-Lapasio, J. R., Vivo-Truyols, G., & Garcia-Alvarez-Coque, M. C. (2007). A comparative study of the performance of acetonitrile and methanol in the multi-linear gradient separation of proteic primary amino acids. Analytica Chimica Acta, 582, 250-258. doi: 10.1016/j.aca.2006.09.015.
8. Dallet, P., Labat, L., Kummer, E., & Dubost, J. P. (2000). Determination of urea, allantoin and lysine pyroglutamate in cosmetic samples by hydrophilic interaction chromatography. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 742, 447-452. doi: 10.1016/S0378-4347(00)00196-1.
9. Dalluge, J. J., Smith, S., Sanchez-Riera, F., McGuire, C., & Hobson, R. (2004). Potential of fermentation profiling via rapid measurement of amino acid metabolism by liquid chromatography-tandem mass spectrometry. Journal of Chromatography. A, 1043, 3-7. doi: 10.1016/ j.chroma.2004.02.010.
10. Destandau, E., Vial, J., Jardy, A., Hennion, M.-C., Bonnet, D., & Lancelin, P. (2005). Development and validation of a reversed-phase liquid chromatography method for the quantitative determination of carboxylic acids in industrial reaction mixtures. Journal of Chromatography. A, 1088, 49-56. doi: 10.1016/j.chroma.2005.01.002.
11. Duran, M., Dorland, L., Meuleman, E. E. E., Allers, P., & Berger, R. (1997). Inherited defects of purine and pyrimidine metabolism: Laboratory methods for diagnosis. Journal of Inherited Metabolic Disease, 20, 227-236. doi: 10.1023/A:1005360907238.
12. Ermer, J., & Vogel, M. (2000). Applications of hyphenated LC-MS techniques in pharmaceutical analysis. Biomedical Chromatography, 14, 373-383. doi:10.1002/ 1099-0801(200010)14:6<373::AID-BMC29>3.0.CO;2-S.
13. Gika, H. G., Theodoridis, G. A., Wingate, J. E., & Wilson, I. D. (2007). Within-day reproducibility of an HPLC-MS-based method for metabonomic analysis: Application to human urine. Journal of Proteome Research, 6, 3291-3303. doi: 10.1021/pr070183p.
14. Guignard, C., Jouve, L., Bogeat-Triboulot, M. B., Dreyer, E., Hausman, J.-F., & Hoffmann, L. (2005). Analysis of carbohydrates in plants by high-performance anion-exchange chromatography coupled with electrospray mass spectrometry. Journal of Chromatography. A, 1085, 137-142. doi: 10.1016/j.chroma.2005.05.068.
15. Guy, P. A., Tavazzi, I., Bruce, S. J., Ramadan, Z., & Kochhar, S. (2008). Global metabolic profiling analysis on human urine by UPLC-TOFMS: Issues and method validation in nutritional metabolomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 871, 253-260. doi: 10.1016/j.jchromb.2008.04.034.
16. Hodson, M. P., Dear, G. J., Roberts, A. D., Haylock, C. L., Ball, R. J., Plumb, R. S., et al. (2007). A gender-specific discriminator in Sprague-Dawley rat urine: The deployment of a metabolic profiling strategy for biomarker discovery and identification. Analytical Biochemistry, 362, 182-192. doi: 10.1016/j.ab.2006.12.037.
17. Hou, S., Hindle, M., & Byron, P. R. (2005). Chromatographic and mass spectral characterization of budesonide and a series of structurally related corticosteroids using LC-MS. Journal of Pharmaceutical and Biomedical Analysis, 39, 196-205. doi: 10.1016/j.jpba.2005.03.026.
18. Idborg-Bjorkman, H., Edlund, P. O., Kvalheim, O. M., Schuppe-Koistinen, I., & Jacobsson, S. P. (2003). Screening of biomarkers in rat urine using LC/electrospray ionization-MS and two-way data analysis. Analytical Chemistry, 75, 4784-4792. doi: 10.1021/ac0341618.
19. Jones, M. D., & Plumb, R. S. (2006). The application of sub-2-lmparticle liquid chromatography-operated high mobile linear velocities coupled to orthogonal accelerated time-of-flight mass spectrometry for the analysis of ranitidine and its impurities. Journal of Separation Science, 29, 2409-2420. doi: 10.1002/jssc.200600118.
20. Kang, W., Liu, K.-H., Ryu, J.-Y., & Shin, J.-G. (2004). Simultaneous determination of ebastine and its three metabolites in plasma using liquid chromatography-tandem mass spectrometry. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 813, 75-80. doi: 10.1016/j.jchromb.2004.09.017.
21. Kind, T., Tolstikov, V., Fiehn, O., & Weiss, R. H. (2007). A comprehensive urinary metabolomic approach for identifying kidney cancer. Analytical Biochemistry, 363, 185-195. doi: 10.1016/ j.ab.2007.01.028.
22. Kushnir, M. M., Komaromy-Hiller, G., Shushan, B., Urry, F. M., & Roberts, W. L. (2001). Analysis of dicarboxylic acids by tandem mass spectrometry. High-throughput quantitative measurement of methylmalonic acid in serum, plasma, and urine. Clinical Chemistry, 47, 1993-2002.
23. Lenz, E. M., Bright, J., Knight, R., Westwood, F. R., Davies, D., Major, H., et al. (2005). Metabonomics with 1 H-NMR spectroscopy and liquid chromatography-mass spectrometry applied to the investigation of metabolic changes caused by gentamicin-induced nephrotoxicity in the rat. Biomarkers, 10, 173-187. doi: 10.1080/13547500500094034.
24. Meng, L.-J., & Sjovall, J. (1997). Method for combined analysis of profiles of conjugated progesterone metabolites and bile acids in serum and urine of pregnant women. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 688(1), 11-26.
25. Novakova, L., Solichova, D., & Solich, P. (2006). Advantages of ultra performance liquid chromatography over high-performance liquid chromatography: Comparison of different analytical approaches during analysis of diclofenac gel. Journal of Separation Science, 29, 2433-2443. doi: 10.1002/jssc.200600147.
26. Oertel, R., Renner, U., & Kirch, W. (2004). Determination of neomycin by LC-tandem mass spectrometry using hydrophilic interaction chromatography. Journal of Pharmaceutical and Biomedical Analysis, 35, 633-638. doi: 10.1016/j.jpba.2004.01.018.
27. Paek, I. B., Moon, Y., Ji, H. Y., Kim, H.-H., Lee, H. W., Lee, Y.-B., et al. (2004). Hydrophilic interaction liquid chromatography-tandem mass spectrometry for the determination of levosulpiride in human plasma. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 809, 345-350.
28. Plumb, R. S., Castro-Perez, J., Granger, J., Beattie, I., Joncour, K., & Wright, A. (2004). Ultra-performance liquid chromatography coupled to quadrupole-orthogonal time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 18, 2331-2337. doi: 10.1002/ rcm.1627.
29. Plumb, R. S., Granger, J. H., Stumpf, C. L., Johnson, K. A., Smith, B. W., Gaulitz, S., et al. (2005). A rapid screening approach to metabonomics using UPLC and oa-TOF mass spectrometry: Application to age, gender and diurnal variation in normal/Zucker obese rats and black, white and nude mice. Analyst (London), 130, 844-849. doi: 10.1039/ b501767j.
30. Plumb, R. S., Rainville, P., Smith, B. W., Johnson, K. A., Castro-Perez, J., Wilson, I. D., et al. (2006). Generation of ultrahigh peak capacity LC separations via elevated temperatures and high linear mobile-phase velocities. Analytical Chemistry, 78, 7278-7283. doi: 10.1021/ac060935j.
31. Plumb, R. S., Stumpf, C. L., Gorenstein, M. V., Castro-Perez, J. M., Dear, G. J., Anthony, M., et al. (2002). Metabonomics: The use of electrospray mass spectrometry coupled to reversed-phase liquid chromatography shows potential for the screening of rat urine in drug development. Rapid Communications in Mass Spectrometry, 16, 1991-1996. doi: 10.1002/rcm.813.
32. Plumb, R. S., Stumpf, C. L., Granger, J. H., Castro-Perez, J., Haselden, J. N., & Dear, G. J. (2003). Use of liquid chromatography/ time-of-flight mass spectrometry and multivariate statistical analysis shows promise for the detection of drug metabolites in biological fluids. Rapid Communications in Mass Spectrometry, 17, 2632-2638. doi: 10.1002/rcm.1250.
33. Sangster, T., Major, H., Plumb, R., Wilson, A. J., & Wilson, I. D. (2006). A pragmatic and readily implemented quality control strategy for HPLC-MS and GC-MS-based metabonomic analysis. Analyst (London), 131, 1075-1078. doi: 10.1039/b604498k.
34. Schlichtherle-Cerny, H., Affolter, M., & Cerny, C. (2003). Hydrophilic interaction liquid chromatography coupled to electrospray mass spectrometry of small polar compounds in food analysis. Analytical Chemistry, 75, 2349-2354. doi: 10.1021/ac026313p.
35. Stumpf, C. L., & Goshawk, J. (2004). Waters application note - The MarkerLynx Application Manager: Informatics for Mass Spectrometric Metabonomic Discovery, Waters Corporation. http://www.waters.com/ webassets/cms/library/docs/720001056en.pdf.
36. Tolstikov, V. V., & Fiehn, O. (2002). Analysis of highly polar compounds of plant origin: Combination of hydrophilic interaction chromatography and electrospray ion trap mass spectrometry. Analytical Biochemistry, 301, 298-307. doi: 10.1006/abio.2001.5513.
37. Williams, R. E., Lenz, E. M., Evans, J. A., Wilson, I. D., Granger, J. H., Plumb, R. S., et al. (2005). A combined 1 H NMR and HPLC-MS-based metabonomic study of urine from obese (fa/fa) Zucker and normal Wistar-derived rats. Journal of Pharmaceutical and Biomedical Analysis, 38, 465-471. doi: 10.1016/j.jpba.2005.01.013.
38. Wilson, I. D., Nicholson, J. K., Castro-Perez, J., Granger, J. H., Johnson, K. A., Smith, B. W., et al. (2005b). High resolution "ultra performance" liquid chromatography coupled to oa-TOF mass spectrometry as a tool for differential metabolic pathway profiling in functional genomic studies. Journal of Proteome Research, 4, 591-598. doi: 10.1021/pr049769r.
39. Wilson, I. D., Plumb, R., Granger, J., Major, H., Williams, R., & Lenz, E. M. (2005a). HPLC-MS-based methods for the study of metabonomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences, 817, 67-76. doi: 10.1016/ j.jchromb.2004.07.045.