Bulk soil and rhizosphere bacterial community PCR-DGGE profiles and β-galactosidase activity as indicators of biological quality in soils contaminated by heavy metals and cultivated with Silene vulgaris (Moench) Garcke

Chemosphere

Volumn 75, Issue 10, 2009, Pages 1376-1381

  Martinez Inigo M J ^a   Perez Sanz A ^a   Ortiz, I ^a   Alonso, J ^a   Alarcon R ^a   Garcia P ^a   Lobo, M C ^a  

^a Instituto Madrileno de Investigacion y Desarrollo Rural   (Spain)

Author keywords

Heavy metals; Microbial activity; Revegetation; Rhizosphere; Silene vulgaris; Soil

Indexed keywords

BACTERIA; CONTAMINATION; CULTIVATION; ELECTROPHORESIS; ENZYME ACTIVITY; HEAVY METALS; POLYMERASE CHAIN REACTION; REVEGETATION; RNA; SOIL CONSERVATION; SOIL SURVEYS; SOILS;

CONTAMINATION LEVELS; CULTURABLE BACTERIA; ENZYMATIC ACTIVITIES; HEAVY METAL CONTAMINATED SOILS; MICROBIAL ACTIVITIES; POLYMERASE CHAIN REACTION-DENATURING GRADIENT GEL ELECTROPHORESES (PCR-DGGE); RHIZOSPHERE; SILENE VULGARIS;

SOIL POLLUTION;

BETA GALACTOSIDASE; HEAVY METAL;

BACTERIUM; CALCAREOUS SOIL; DICOTYLEDON; ELECTROKINESIS; ENZYME ACTIVITY; HEAVY METAL; MICROBIAL ACTIVITY; PH; POLYMERASE CHAIN REACTION; REVEGETATION; RHIZOSPHERE; RNA;

ARTICLE; ENZYME ACTIVITY; POLYMERASE CHAIN REACTION; RHIZOSPHERE; SILENE; SOIL ANALYSIS; SOIL POLLUTION;

BACTERIA (MICROORGANISMS); SILENE VULGARIS;

EID: 67349161000     PISSN: 00456535     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemosphere.2009.03.014     Document Type: Article

References (34)

1. Bandick A.K., and Dick R.P. Field management effects on soil enzyme activities. Soil Biol. Biochem. 31 (1999) 1471-1479
2. Belyaeva O.N., Haynes R.J., and Birukova O.A. Barley yield and soil microbial and enzyme activities as affected by contamination of two soils with lead, zinc or copper. Biol. Fert. Soil 41 (2005) 85-94
3. Bowen G.D., and Rovira A. The rhizosphere. In: Walsel Y., Eshel A., and Kafkafi U. (Eds). Plants Root, the Hidden Half (1991), Marcel Dekker, New York 641-669
4. Brohon B., Delolme C., and Gourdon R. Complementarity of bioassays and microbial activity measurements for the evaluation of hydrocarbon-contaminated soil quality. Soil Biol. Biochem. 33 (2001) 883-891
5. Carbonell G., Pablos M.V., García P., Ramos C., Sánchez P., Fernández C., and Tarazona J.V. Rapid and cost-effective multiparameter toxicity tests for soil microorganisms. Sci. Total Environ. 247 (2000) 143-150
6. Conesa H.M., García G., Faz A., and Arnaldos R. Dynamics of metal tolerant plant communities' development in mine tailings from the Cartagena-La Unión Mining District (SE Spain) and their interest for further revegetation purposes. Chemosphere 68 (2007) 1180-1185
7. Day P.R. Particle fraction and particle-size analysis. In: Black C.A. (Ed). Methods of Soil Analysis (1965), Amer. Soc. Agr. Inc. Publ., WI
8. Duineveld B.M., Rosado A.S., van Elsas J.D., and van Veen J.A. Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns. Appl. Environ. Microb. 64 (1998) 4950-4957
9. Eivazi F., and Tabatabai M.A. Factors affecting glucosidase and galactosidase activities in soils. Soil Biol. Biochem. 22 (1990) 891-897
10. Elrashidi M.A., Hammer D., Fares A., Seybold C.A., Ferguson R., and Peaslee S.D. Loss of heavy metals by runoff from agricultural watersheds. Soil Sci. 172 (2007) 876-894
11. Evans F.F., Seldin L., Sebastian G.V., Kjelleberg S., Holmström C., and Rosado A.S. Influence of petroleum contamination and biostimulation treatment on the diversity of Pseudomonas spp. in soil microcosms as evaluated by 16S rRNA based-PCR and DGGE. Lett. Appl. Microbiol. 38 (2004) 93-98
12. Girvan M.S., Campbell C.D., Killham K., Prosser J.I., and Glover L.A. Bacterial diversity promotes community stability and functional resilience after perturbation. Environ. Microbiol. 7 (2005) 301-313
13. Heuer H., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) for studying soil microbial communities. In: van Elsas J.D., Trevors J.T., and Wellington E.M.H. (Eds). Modern Soil Microbiology (1997), Marcel Dekker, New York, NY 353-373
14. Li Z., Xu J., Tang C., Wu J., Muhammad A., and Wang H. Application of 16S rRNA gene-PCR amplification and DGGE fingerprinting for detection of shift in microbial community diversity in Cu-, Zn-, and Cd-contaminated paddy soils. Chemosphere 62 (2006) 1374-1380
15. Loeppert R.H., and Suarez D.L. Carbonate and gypsum. In: Bigham J.M. (Ed). Methods of Soil Analysis. Part 3. Chemical Methods (1996), SSSA, Madison, WI 437-474
16. Lorenz N., Hintemann T., Kramarewa T., Katayama A., Yasuta T., Marschner P., and Kandeler E. Response of microbial activity and microbial community composition in soils to long-term arsenic and cadmium exposure. Soil Biol. Biochem. 38 (2006) 1430-1437
17. Lynch J.M. Soil Rhizosphere (1990), John Wiley and Sons, New York
18. Martínez-Iñigo, M.J., García-Vedia, M., Lobo, M.C., 2003a. Measurement of β-galactosidase activity in toxicity test for soil. In: Book of Abstracts Second International Conference Enzymes in the Environment, Praha, Czech Republic, p. 116.
19. Martínez-Iñigo M.J., García-Vedia M., and Lobo M.C. Determinación de la actividad β-galactosidasa del suelo. In: García C., Gíl F., Hernández T., and Trasar C. (Eds). Técnicas de Análisis de Parámetros Bioquímicos en Suelos: Medida de Actividades Enzimáticas y Biomasa Microbiana (2003), Mundi-Prensa, Madrid, Spain 187-196
20. Mench M., Renella G., Gelsomino A., Landi L., and Nannipieri P. Biochemical parameters and bacterial richness in soils contaminated by sludge-borne metals and remediated with inorganic amendments. Environ. Pollut. 144 (2006) 24-31
21. Ministerio de Agricultura, 1992. Métodos Oficiales de Análisis, vol. III, Spain.
22. Nelson D.W., and Sommers L.E. Total carbon, organic carbon and organic matter. In: Bigham J.M. (Ed). Methods of Soil Analysis. Part 3. Chemical Methods (1996), SSSA, Madison, WI 961-1010
23. Pawloska T.E., Chaney R.L., Chin M., and Charnat I. Effects of metal phytoextraction practices on the indigenous community of arbuscular mycorrhizal fungi at a metal-contaminated landfill. Appl. Environ. Microb. 66 (2000) 2526-2530
24. Pérez-Sanz A., Alonso J., Alarcón R., García-Gonzalo P., and Lobo M.C. Preliminary test to evaluate metal accumulation in Silene vulgaris grown in polluted soils treated previously with electrokinetic technologies. In: Zhu Y., Lepp N., and Naidu R. (Eds). Biogeochemistry of Trace Elements: Environmental Protection, Remediation and Human Health (2007), Tsinghua University Press, Beijing 219-220
25. Peterson S.M., and Stauber J.L. New algal enzyme bioassay for the rapid assessment of aquatic toxicity. B Environ. Contam. Toxicol. 56 (1996) 750-757
26. Renella G., Mench M., Landi L., and Nannipieri P. Microbial activity and hydrolase synthesis in long-term Cd-contaminated soils. Soil Biol. Biochem. 37 (2005) 133-139
27. Renella G., Mench M., van der Lelie D., Pietramellara G., Ascher J., Ceccherini M.T., Landi L., and Nannipieri P. Hydrolase activity, microbial biomass and community structure in long-term Cd-contaminated soils. Soil Biol. Biochem. 36 (2004) 443-451
28. Rosado A.S., Duarte G.F., Seldin L., and van Elsas J.D. Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments. Appl. Environ. Microb. 64 (1998) 2770-2779
29. Sastre I., Vicente M.A., and Lobo M.C. Contamination and environmental impact on soil biological activity. In: Lobo M.C., and Ibáñez J.J. (Eds). Preserving Soil Quality and Soil Biodiversity. The Role of Surrogate Indicators (2003), IMIDRA-CSIC, Spain 99-117
30. Singh B.K., Walker A., Morgan J.A.W., and Wright D.J. Effects of soil pH on the biodegradation of chlorpyrifos and isolation of a chlorpyrifos-degrading bacterium. Appl. Environ. Microb. 69 (2003) 5198-5206
31. USDA-SSS, 1999. Soil Taxonomy. US Government Printing Office, Washington, DC.
32. Wang A., Chen J., and Crowley D.E. Changes in metabolic and structural diversity of a soil bacterial community in response to cadmium toxicity. Biol. Fert. Soil 39 (2004) 352-356
33. Weisskopf L., Fromin N., Tomasi N., Aragno M., and Martinoia E. Secretion activity of white lupin's cluster roots influences bacterial abundance, function and community structure. Plant Soil 268 (2005) 181-194
34. Wierzbicka M., and Panufnik D. The adaptation of Silene vulgaris to growth on a calamine waste heap (S. Poland). Environ. Pollut. 101 (1998) 415-426