Characterization of β-1,3-galactosyl-N-acetylhexosamine phosphorylase from Propionibacterium acnes

Applied Microbiology and Biotechnology

Volumn 83, Issue 1, 2009, Pages 109-115

  Nakajima, Masahiro ^a   Nishimoto, Mamoru ^a   Kitaoka, Motomitsu ^a  

^a NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

Author keywords

EC 2.4.1.211; Galacto N biose; Galacto N biose phosphorylase; Lacto N biose I; Mucin; Propionibacterium acnes

Indexed keywords

EC 2.4.1.211; GALACTO-N-BIOSE; GALACTO-N-BIOSE PHOSPHORYLASE; LACTO-N-BIOSE I; MUCIN; PROPIONIBACTERIUM ACNES;

BLOOD VESSEL PROSTHESES; CLONING; DNA; ELECTRIC CONDUCTIVITY MEASUREMENT; GENES; NUCLEIC ACIDS; PHOSPHORYLATION;

ENZYME ACTIVITY;

BETA 1,3 GALACTOSYL N ACETYLHEXOSAMINE PHOSPHORYLASE; GENOMIC DNA; PHOSPHORYLASE; UNCLASSIFIED DRUG;

BACTERIUM; CATALYST; DNA; ENZYME ACTIVITY; GENE EXPRESSION; GENOME; PROTEIN; RECOMBINATION;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; CATALYST; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME SPECIFICITY; ENZYME SYNTHESIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROPIONIBACTERIUM ACNES; PROTEIN DEGRADATION; SEQUENCE HOMOLOGY; STRUCTURAL HOMOLOGY;

ACETYLGLUCOSAMINE; CLONING, MOLECULAR; DISACCHARIDES; DNA, BACTERIAL; ENZYME STABILITY; GALACTOSYLTRANSFERASES; HYDROGEN-ION CONCENTRATION; KINETICS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROPIONIBACTERIUM ACNES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUBSTRATE SPECIFICITY; TEMPERATURE;

PROPIONIBACTERIUM ACNES;

EID: 67349154409     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1838-y     Document Type: Article

References (31)

1. C Allison GT Macfarlane 1989 Dissimilatory nitrate reduction by Propionibacterium acnes Appl Environ Microbiol 55 2899 2903 (Pubitemid 19272164)
2. JD Bendtsen H Nielsen G von Heijne S Brunak 2004 Improved prediction of signal peptides: SignalP 3.0 J Mol Biol 340 783 795 (Pubitemid 38829638)
3. H Bruggemann A Henne F Hoster H Liesegang A Wiezer A Strittmatter S Hujer P Durre G Gottschalk 2004 The complete genome sequence of Propionibacterium acnes, a commensal of human skin Science 305 671 673 (Pubitemid 39006756)
4. BL Cantarel PM Coutinho C Rancurel T Bernard V Lombard B Henrissat 2009 Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics Nucleic Acids Res 37 D233 D238
5. D Derensy-Dron F Krzewinski C Brassart S Bouquelet 1999 β-1,3-Galactosyl-N-acetylhexosamine phosphorylase from Bifidobacterium bifidum DSM 20082: characterization, partial purification and relation to mucin degradation Biotechnol Appl Biochem 29 3 10 (Pubitemid 29082318)
6. K Fujita F Oura N Nagamine T Katayama J Hiratake K Sakata H Kumagai K Yamamoto 2005 Identification and molecular cloning of a novel glycoside hydrolase family of core 1 type O-glycan-specific endo-α-N- acetylgalactosaminidase from Bifidobacterium longum J Biol Chem 280 37415 37422 (Pubitemid 41642348)
7. B Henrissat 1991 A classification of glycosyl hydrolases based on amino-acid sequence similarities Biochem J 280 309 316
8. Y Honda M Kitaoka K Hayashi 2004 Reaction mechanism of chitobiose phosphorylase from Vibrio proteolyticus: identification of family 36 glycosyltransferase in Vibrio Biochem J 377 225 232 (Pubitemid 38114449)
9. S Huwel L Haalck N Conrath F Spener 1997 Maltose phosphorylase from Lactobacillus brevis: purification, characterization, and application in a biosensor for ortho-phosphate Enzyme Microbial Technol 21 413 420 (Pubitemid 27478145)
10. I Ishige Y Eishi T Takemura I Kobayashi K Nakata I Tanaka S Nagaoka K Iwai K Watanabe T Takizawa M Koike 2005 Propionibacterium acnes is the most common bacterium commensal in peripheral lung tissue and mediastinal lymph nodes from subjects without sarcoidosis Sarcoidosis Vasc Diffuse Lung Dis 22 33 42 (Pubitemid 40444732)
11. E Jakab R Zbinden J Gubler C Ruef A von Graevenitz M Krause 1996 Severe infections caused by Propionibacterium acnes: an underestimated pathogen in late postoperative infections Yale J Biol Med 69 477 482 (Pubitemid 126686728)
12. T Katayama A Sakuma T Kimura Y Makimura J Hiratake K Sakata T Yamanoi H Kumagai K Yamamoto 2004 Molecular cloning and characterization of Bifidobacterium bifidum 1,2-α-l-fucosidase (AfcA), a novel inverting glycosidase (Glycoside hydrolase family 95) J Bacteriol 186 4885 4893 (Pubitemid 38970815)
13. M Kitaoka T Sasaki H Taniguchi 1992 Phosphorolytic reaction of Cellvibrio gilvus cellobiose phosphorylase Biosci Biotechnol Biochem 56 652 655
14. M Kitaoka J Tian M Nishimoto 2005 Novel putative galactose operon involving lacto-N-biose phosphorylase in Bifidobacterium longum Appl Environ Microbiol 71 3158 3162 (Pubitemid 40807225)
15. D Koutsioulis D Landry E Guthrie 2008 Novel endo-α-N- acetylgalactosaminidases with broader substrate specificity Glycobiology 18 799 805
16. T Kudo H Iwasaki S Nishihara N Shinya T Ando I Narimatsu H Narimatsu 1996 Molecular genetic analysis of the human Lewis histo-blood group system J Biol Chem 271 9830 9837
17. OH Lowry JA Lopez 1946 The determination of inorganic phosphate in the presence of labile phosphate esters J Biol Chem 162 421 428
18. GC [tmp] McLorinan JV Glenn MG [tmp] McMullan S Patrick 2005 Propionibacterium acnes wound contamination at the time of spinal surgery Clin Orthop Relat Res 437 67 73 (Pubitemid 41099068)
19. T Mitsuoka 1996 Intestinal flora and human health Asia Pac J Clin Nutr 5 2 9 (Pubitemid 126698702)
20. M Nagae A Tsuchiya T Katayama K Yamamoto S Wakatsuki R Kato 2007 Structural basis of the catalytic reaction mechanism of novel 1,2-α-l-fucosidase from Bifidobacterium bifidum J Biol Chem 282 18497 18509 (Pubitemid 47100222)
21. M Nakajima M Kitaoka 2008 Identification of lacto-N-Biose I phosphorylase from Vibrio vulnificus CMCP6 Appl Environ Microbiol 74 6333 6337
22. M Nakajima T Nihira M Nishimoto M Kitaoka 2008 Identification of galacto-N-biose phosphorylase from Clostridium perfringens ATCC1312 Appl Microbiol Biotechnol 78 465 471
23. H Nielsen J Engelbrecht S Brunak G von Heijne 1997 Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites Protein Eng 10 1 6 (Pubitemid 27073346)
24. T Nihira M Nakajima K Inoue M Nishimoto M Kitaoka 2007 Colorimetric quantification of α-d-galactose 1-phosphate Anal Biochem 371 259 261 (Pubitemid 350015964)
25. M Nishimoto M Kitaoka 2007 Identification of the putative proton donor residue of lacto-N-biose phosphorylase (EC 2.4.1.211) Biosci Biotechnol Biochem 71 1587 1591 (Pubitemid 47012027)
26. M Nishimoto M Kitaoka 2007 Practical preparation of Lacto-N-biose I, the candidate of the bifidus factor in human milk Biosci Biotechnol Biochem 71 2101 2104 (Pubitemid 350113147)
27. M Nishimoto M Kitaoka 2007 The complete lacto-N-biose I/galacto-N-biose metabolic pathway in Bifidobacterium longum: identification of N-acetylhexosamine 1-kinase Appl Environ Microbiol 73 6444 6449 (Pubitemid 47623702)
28. R Suzuki J Wada T Katayama S Fushinobu T Wakagi H Shoun H Sugimoto A Tanaka H Kumagai H Ashida M Kitaoka K Yamamoto 2008 Structural and thermodynamic analyses of solute-binding protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I J Biol Chem 283 13165 13173
29. J Wada R Suzuki S Fushinobu M Kitaoka T Wakagi H Shoun H Ashida H Kumagai T Katayama K Yamamoto 2007 Purification, crystallization and preliminary X-ray analysis of the galacto-N-biose-/lacto-N-biose I-binding protein (GL-BP) of the ABC transporter from Bifidobacterium longum JCM1217 Acta Cryst F 63 751 753 (Pubitemid 47360125)
30. J Wada T Ando M Kiyohara H Ashida M Kitaoka M Yamaguchi H Kumagai T Katayama K Yamamoto 2008 Bifidobacterium bifidum lacto-N-biosidase, a critical enzyme for the degradation of human milk oligosaccharides with a type 1 structure Appl Environ Microbiol 74 3996 4004
31. T Yamada Y Eishi S Ikeda I Ishige T Suzuki T Takemura T Takizawa M Koike 2002 In situ localization of Propionibacterium acnes DNA in lymph nodes from sarcoidosis patients by signal amplification with catalysed reporter deposition J Pathol 198 541 547 (Pubitemid 35447007)